AT2G25930

early flowering

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
11058944 .. 11063324
4381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25930.1

Sequence Viewer

Length: 2088 bp
ATGAAGAGAGGGAAAGATGAGGAGAAGATATTGGAACCTATGTTTCCTCGGCTTCATGTGAATGATGCAGATAAAGGAGGGCCTAGAGCTCCTCCTAGAAACAAGATGGCTCTTTATGAGCAGCTTAGTATTCCTTCTCAGAGGTTTGGTGATCATGGAACGATGAATTCTCGTAGTAACAACACAAGCACTTTGGTTCATCCTGGACCATCTAGTCAGCCTTGTGGTGTGGAAAGAAACTTATCTGTCCAGCATCTTGATTCTTCAGCCGCAAACCAAGCAACTGAGAAGTTTGTCTCCCAAATGTCCTTCATGGAAAATGTGAGATCTTCGGCACAGCATGATCAGAGGAAAATGGTGAGAGAGGAAGAAGATTTTGCAGTTCCAGTATATATTAACTCAAGAAGATCTCAGTCTCATGGCAGAACCAAGAGTGGTATTGAGAAGGAAAAACACACCCCAATGGTGGCACCTAGCTCTCATCACTCCATTCGATTTCAAGAAGTGAATCAGACAGGCTCAAAGCAAAACGTATGTTTGGCTACTTGTTCAAAACCTGAAGTTAGGGATCAGGTCAAGGCGAATGCAAGGTCAGGTGGCTTTGTAATCTCTTTAGATGTATCAGTCACAGAGGAGATTGATCTCGAAAAATCAGCATCAAGTCATGATAGAGTAAATGATTATAATGCTTCCTTGAGACAAGAGTCTAGAAATCGGTTATACCGAGATGGTGGCAAAACTCGTCTGAAGGACACTGATAATGGAGCTGAATCTCACTTGGCAACGGAAAATCATTCACAAGAGGGTCATGGCAGTCCTGAAGACATTGATAATGATCGTGAATACAGCAAAAGCAGAGCATGCGCCTCTCTGCAGCAGATAAATGAAGAGGCAAGTGATGACGTTTCTGATGATTCGATGGTGGATTCTATATCCAGCATAGATGTCTCTCCCGATGATGTTGTGGGTATATTAGGTCAAAAACGTTTCTGGAGAGCAAGGAAAGCCATTGCCAATCAACAAAGAGTATTTGCTGTTCAACTATTTGAGTTGCACAGACTGATTAAGGTTCAAAAACTTATTGCTGCATCACCGGATCTCTTGCTCGATGAGATCAGTTTTCTTGGAAAAGTTTCTGCTAAAAGCTATCCAGTGAAGAAGCTCCTTCCATCAGAATTTCTGGTAAAGCCTCCTCTACCACATGTTGTCGTCAAACAAAGGGGTGACTCGGAGAAGACTGACCAACATAAAATGGAAAGCTCAGCTGAGAACGTAGTTGGGAGGTTGTCAAATCAAGGTCATCATCAACAATCCAACTACATGCCTTTTGCAAACAACCCACCGGCTTCACCGGCTCCAAATGGATATTGCTTTCCTCCTCAGCCTCCTCCTTCAGGAAATCATCAGCAATGGTTGATCCCTGTAATGTCTCCCTCGGAAGGACTGATATACAAGCCTCACCCAGGTATGGCACACACGGGGCATTATGGAGGATATTATGGTCATTATATGCCTACACCAATGGTAATGCCTCAATATCACCCCGGCATGGGATTCCCACCTCCTGGTAATGGCTACTTCCCTCCATATGGAATGATGCCCACCATAATGAACCCATATTGTTCAAGCCAACAACAACAACAACAACAACCCAATGAGCAAATGAACCAGTTTGGACATCCTGGAAATCTTCAGAACACCCAACAACAACAACAGAGATCTGATAATGAACCTGCTCCACAGCAACAGCAACAGCCAACAAAGTCTTATCCGCGAGCAAGAAAGAGCAGGCAAGGGAGCACAGGAAGCAGTCCAAGTGGGCCACAGGGAATCTCTGGTAGCAAGTCCTTTCGGCCATTCGCAGCCGTTGATGAGGACAGCAACATCAACAATGCACCTGAGCAAACGATGACAACAACCACAACGACGACAAGAACAACTGTTACTCAGACAACAAGAGATGGGGGAGGAGTGACGAGAGTGATAAAGGTGGTACCTCACAACGCAAAGCTCGCGAGTGAGAATGCTGCCAGAATTTTCCAGTCAATACAAGAAGAACGTAAACGCTATGACTCCTCTAAGCCTTAA

Protein Analysis

695

Amino Acids

77.2

Weight (kDa)

8.63

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011764)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AasI GACNNNNNNGTC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 1741
Acc65I GGTACC 1 cut(s) 1993
AccB1I GGYRCC 2 cut(s) 469, 1993
AccB7I CCANNNNNTGG 1 cut(s) 1565
AccII CGCG 2 cut(s) 1774, 2015
AciI CCGC 2 cut(s) 270, 1772
AclI AACGTT 1 cut(s) 985
AclWI GGATC 3 cut(s) 576, 1104, 1411
AcoI YGGCCR 1 cut(s) 1853
AcsI RAATTY 3 cut(s) 166, 1175, 2034
AcuI CTGAAG 6 cut(s) 249, 579, 767, 840, 1377, 1676
AfaI GTAC 1 cut(s) 1995
AflIII ACRYGT 1 cut(s) 1201
AgsI TTSAA 5 cut(s) 500, 552, 1040, 1073, 1626
AjnI CCWGG 4 cut(s) 202, 1462, 1564, 1681
AluBI AGCT 9 cut(s) 89, 124, 477, 767, 1146, 1162, 1260, 1265, 2011
AluI AGCT 9 cut(s) 89, 124, 477, 767, 1146, 1162, 1260, 1265, 2011
Alw21I GWGCWC 2 cut(s) 91, 1802
Alw26I GTCTC 5 cut(s) 301, 420, 691, 952, 1434
AlwI GGATC 3 cut(s) 576, 1104, 1411
AoxI GGCC 3 cut(s) 80, 1820, 1853
ApeKI GCWGC 5 cut(s) 121, 874, 1085, 1862, 2027
ApoI RAATTY 3 cut(s) 166, 1175, 2034
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp700I GAANNNNTTC 1 cut(s) 1132
Asp718I GGTACC 1 cut(s) 1993
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 3 cut(s) 80, 206, 1820
AsuC2I CCSGG 1 cut(s) 1545
AsuHPI GGTGA 7 cut(s) 161, 370, 1083, 1235, 1341, 1451, 1532
AvaII GGWCC 1 cut(s) 206
BanI GGYRCC 2 cut(s) 469, 1993
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 828, 1241
Bbv12I GWGCWC 2 cut(s) 91, 1802
BbvCI CCTCAGC 1 cut(s) 1380
BbvI GCAGC 5 cut(s) 133, 886, 1072, 1874, 2014
BccI CCATC 6 cut(s) 100, 217, 722, 913, 1177, 1955
BceAI ACGGC 1 cut(s) 1850
BciT130I CCWGG 4 cut(s) 204, 1464, 1566, 1683
BclI TGATCA 2 cut(s) 151, 343
BcnI CCSGG 1 cut(s) 1545
BcoDI GTCTC 5 cut(s) 301, 420, 691, 952, 1434
BfaI CTAG 5 cut(s) 84, 96, 213, 474, 708
BfmI CTRYAG 1 cut(s) 872
BfuAI ACCTGC 1 cut(s) 1741
BglII AGATCT 3 cut(s) 326, 407, 1718
BisI GCNGC 6 cut(s) 122, 270, 875, 1086, 1863, 2028
BlpI GCTNAGC 1 cut(s) 1261
BlsI GCNGC 6 cut(s) 123, 271, 876, 1087, 1864, 2029
Bme1390I CCNGG 5 cut(s) 204, 1464, 1545, 1566, 1683
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 80, 206, 1820
BmiI GGNNCC 4 cut(s) 36, 471, 1356, 1995
BmrFI CCNGG 5 cut(s) 204, 1464, 1545, 1566, 1683
BmsI GCATC 5 cut(s) 55, 262, 665, 1097, 1587
BoxI GACNNNNGTC 1 cut(s) 703
BpiI GAAGAC 2 cut(s) 828, 1241
BpmI CTGGAG 1 cut(s) 1012
Bpu10I CCTNAGC 2 cut(s) 1380, 1899
Bpu1102I GCTNAGC 1 cut(s) 1261
BpuEI CTTGAG 2 cut(s) 385, 715
BpuMI CCSGG 1 cut(s) 1545
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 47, 1434, 1462, 1543
BsaWI WCCGGW 1 cut(s) 1093
Bse118I RCCGGY 2 cut(s) 1342, 1351
Bse1I ACTGG 4 cut(s) 386, 1151, 1669, 2041
Bse3DI GCAATG 2 cut(s) 1008, 1415
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 4 cut(s) 204, 1464, 1566, 1683
BseDI CCNNGG 4 cut(s) 47, 1434, 1462, 1543
BseGI GGATG 2 cut(s) 199, 1678
BseJI GATNNNNATC 1 cut(s) 834
BseMI GCAATG 2 cut(s) 1008, 1415
BseMII CTCAG 8 cut(s) 152, 276, 425, 1257, 1275, 1394, 1890, 1961
BseNI ACTGG 4 cut(s) 386, 1151, 1669, 2041
BseRI GAGGAG 8 cut(s) 35, 81, 647, 1182, 1368, 1377, 1983, 2065
BseXI GCAGC 5 cut(s) 133, 886, 1072, 1874, 2014
Bsh1236I CGCG 2 cut(s) 1774, 2015
BshFI GGCC 3 cut(s) 82, 1822, 1855
BshNI GGYRCC 2 cut(s) 469, 1993
BsiHKAI GWGCWC 2 cut(s) 91, 1802
BsiSI CCGG 4 cut(s) 1094, 1343, 1352, 1545
BsmAI GTCTC 5 cut(s) 301, 420, 691, 952, 1434
BsmI GAATGC 2 cut(s) 589, 2029
BsnI GGCC 3 cut(s) 82, 1822, 1855
Bsp1286I GDGCHC 2 cut(s) 91, 1802
Bsp1720I GCTNAGC 1 cut(s) 1261
Bsp68I TCGCGA 1 cut(s) 2015
BspACI CCGC 2 cut(s) 270, 1772
BspANI GGCC 3 cut(s) 82, 1822, 1855
BspCNI CTCAG 8 cut(s) 151, 277, 424, 1258, 1274, 1393, 1891, 1960
BspFNI CGCG 2 cut(s) 1774, 2015
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 4 cut(s) 36, 471, 1356, 1995
BspMAI CTGCAG 1 cut(s) 876
BspMI ACCTGC 1 cut(s) 1741
BspPI GGATC 3 cut(s) 576, 1104, 1411
BspT107I GGYRCC 2 cut(s) 469, 1993
BsrDI GCAATG 2 cut(s) 1008, 1415
BsrFI RCCGGY 2 cut(s) 1342, 1351
BsrI ACTGG 4 cut(s) 386, 1151, 1669, 2041
BssAI RCCGGY 2 cut(s) 1342, 1351
BssECI CCNNGG 4 cut(s) 47, 1434, 1462, 1543
Bst2UI CCWGG 4 cut(s) 204, 1464, 1566, 1683
Bst4CI ACNGT 1 cut(s) 1942
Bst6I CTCTTC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 861
BstC8I GCNNGC 4 cut(s) 862, 1776, 1790, 2013
BstENI CCTNNNNNAGG 2 cut(s) 1392, 1461
BstF5I GGATG 2 cut(s) 199, 1678
BstFNI CGCG 2 cut(s) 1774, 2015
BstHHI GCGC 1 cut(s) 866
BstMAI GTCTC 5 cut(s) 301, 420, 691, 952, 1434
BstMWI GCNNNNNNNGC 6 cut(s) 278, 861, 1004, 1352, 1806, 2012
BstNI CCWGG 4 cut(s) 204, 1464, 1566, 1683
BstNSI RCATGY 3 cut(s) 864, 1205, 1324
BstPAI GACNNNNGTC 1 cut(s) 703
BstSCI CCNGG 5 cut(s) 202, 1462, 1543, 1564, 1681
BstSFI CTRYAG 1 cut(s) 872
BstUI CGCG 2 cut(s) 1774, 2015
BstV1I GCAGC 5 cut(s) 133, 886, 1072, 1874, 2014
BstV2I GAAGAC 2 cut(s) 828, 1241
BstX2I RGATCY 4 cut(s) 326, 407, 1096, 1718
BstYI RGATCY 4 cut(s) 326, 407, 1096, 1718
BsuRI GGCC 3 cut(s) 82, 1822, 1855
BtsCI GGATG 2 cut(s) 199, 1678
BtsIMutI CAGTG 2 cut(s) 753, 1158
BtuMI TCGCGA 1 cut(s) 2015
BveI ACCTGC 1 cut(s) 1741
Cac8I GCNNGC 4 cut(s) 862, 1776, 1790, 2013
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 866
Cfr10I RCCGGY 2 cut(s) 1342, 1351
Cfr13I GGNCC 3 cut(s) 80, 206, 1820
Csp6I GTAC 1 cut(s) 1994
CviQI GTAC 1 cut(s) 1994
DrdI GACNNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 1853
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 6 cut(s) 249, 579, 767, 840, 1377, 1676
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 2 cut(s) 1392, 1461
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 202, 1462, 1564, 1681
EcoT38I GRGCYC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 1588
FbaI TGATCA 2 cut(s) 151, 343
Fnu4HI GCNGC 6 cut(s) 122, 270, 875, 1086, 1863, 2028
FokI GGATG 2 cut(s) 186, 1665
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 6 cut(s) 122, 270, 875, 1086, 1863, 2028
FspBI CTAG 5 cut(s) 84, 96, 213, 474, 708
GlaI GCGC 1 cut(s) 865
GluI GCNGC 6 cut(s) 122, 270, 875, 1086, 1863, 2028
GsuI CTGGAG 1 cut(s) 1012
HaeIII GGCC 3 cut(s) 82, 1822, 1855
HapII CCGG 4 cut(s) 1094, 1343, 1352, 1545
HhaI GCGC 1 cut(s) 866
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HpaII CCGG 4 cut(s) 1094, 1343, 1352, 1545
HphI GGTGA 7 cut(s) 161, 370, 1083, 1235, 1341, 1451, 1532
Hpy166II GTNNAC 1 cut(s) 2063
Hpy8I GTNNAC 1 cut(s) 2063
Hpy99I CGWCG 1 cut(s) 1930
HpyAV CCTTC 7 cut(s) 144, 319, 439, 742, 1175, 1401, 1433
HpyCH4III ACNGT 1 cut(s) 1942
HpyCH4IV ACGT 5 cut(s) 531, 903, 985, 1272, 2059
HpyCH4V TGCA 8 cut(s) 68, 380, 587, 874, 1054, 1088, 1331, 1895
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 861, 1004, 1352, 1806, 2012
HpySE526I ACGT 5 cut(s) 531, 903, 985, 1272, 2059
HspAI GCGC 1 cut(s) 864
KpnI GGTACC 1 cut(s) 1997
Ksp22I TGATCA 2 cut(s) 151, 343
LmnI GCTCC 6 cut(s) 94, 764, 1167, 1360, 1741, 1797
Lsp1109I GCAGC 5 cut(s) 133, 886, 1072, 1874, 2014
LweI GCATC 5 cut(s) 55, 262, 665, 1097, 1587
MaeI CTAG 5 cut(s) 84, 96, 213, 474, 708
MaeII ACGT 5 cut(s) 531, 903, 985, 1272, 2059
MaeIII GTNAC 5 cut(s) 176, 625, 1223, 1942, 1972
MflI RGATCY 4 cut(s) 326, 407, 1096, 1718
MhlI GDGCHC 2 cut(s) 91, 1802
MluCI AATT 3 cut(s) 166, 1175, 2034
MlyI GAGTC 3 cut(s) 713, 1220, 2066
MmeI TCCRAC 1 cut(s) 1338
MroXI GAANNNNTTC 1 cut(s) 1132
MseI TTAA 3 cut(s) 396, 1065, 2086
MslI CAYNNNNRTG 3 cut(s) 60, 461, 1607
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 4 cut(s) 1094, 1343, 1352, 1545
MspR9I CCNGG 5 cut(s) 204, 1464, 1545, 1566, 1683
Mva1269I GAATGC 2 cut(s) 589, 2029
MvaI CCWGG 4 cut(s) 204, 1464, 1566, 1683
MvnI CGCG 2 cut(s) 1774, 2015
MwoI GCNNNNNNNGC 6 cut(s) 278, 861, 1004, 1352, 1806, 2012
NciI CCSGG 1 cut(s) 1545
NdeI CATATG 1 cut(s) 1588
NlaIV GGNNCC 4 cut(s) 36, 471, 1356, 1995
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 625, 1223, 1972
NruI TCGCGA 1 cut(s) 2015
NspI RCATGY 3 cut(s) 864, 1205, 1324
PaeI GCATGC 1 cut(s) 864
PagI TCATGA 1 cut(s) 664
PciI ACATGT 1 cut(s) 1201
PcsI WCGNNNNNNNCGW 1 cut(s) 721
PctI GAATGC 2 cut(s) 589, 2029
PdmI GAANNNNTTC 1 cut(s) 1132
PfeI GAWTC 7 cut(s) 260, 508, 770, 914, 926, 1554, 1830
PflMI CCANNNNNTGG 1 cut(s) 1565
PfoI TCCNGGA 2 cut(s) 202, 1681
PkrI GCNGC 6 cut(s) 123, 271, 876, 1087, 1864, 2029
PleI GAGTC 3 cut(s) 712, 1220, 2066
PpsI GAGTC 3 cut(s) 712, 1220, 2066
PscI ACATGT 1 cut(s) 1201
PshAI GACNNNNGTC 1 cut(s) 703
PsiI TTATAA 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 91
Psp1406I AACGTT 1 cut(s) 985
Psp6I CCWGG 4 cut(s) 202, 1462, 1564, 1681
PspGI CCWGG 4 cut(s) 202, 1462, 1564, 1681
PspN4I GGNNCC 4 cut(s) 36, 471, 1356, 1995
PspPI GGNCC 3 cut(s) 80, 206, 1820
PsrI GAACNNNNNNTAC 4 cut(s) 1020, 1052, 1927, 1959
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 4 cut(s) 326, 407, 1096, 1718
PvuII CAGCTG 1 cut(s) 1265
RruI TCGCGA 1 cut(s) 2015
RsaI GTAC 1 cut(s) 1995
RsaNI GTAC 1 cut(s) 1994
RseI CAYNNNNRTG 3 cut(s) 60, 461, 1607
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 396, 1065, 2086
SatI GCNGC 6 cut(s) 122, 270, 875, 1086, 1863, 2028
Sau96I GGNCC 3 cut(s) 80, 206, 1820
SchI GAGTC 3 cut(s) 713, 1220, 2066
ScrFI CCNGG 5 cut(s) 204, 1464, 1545, 1566, 1683
SduI GDGCHC 2 cut(s) 91, 1802
SfaNI GCATC 5 cut(s) 55, 262, 665, 1097, 1587
SfcI CTRYAG 1 cut(s) 872
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 60, 461, 1607
SmlI CTYRAG 2 cut(s) 400, 694
SmoI CTYRAG 2 cut(s) 400, 694
SphI GCATGC 1 cut(s) 864
Sse9I AATT 3 cut(s) 166, 1175, 2034
SsiI CCGC 2 cut(s) 270, 1772
SspMI CTAG 5 cut(s) 84, 96, 213, 474, 708
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 5 cut(s) 202, 1462, 1543, 1564, 1681
TaaI ACNGT 1 cut(s) 1942
TaiI ACGT 5 cut(s) 534, 906, 988, 1275, 2062
TaqI TCGA 4 cut(s) 493, 645, 917, 1107
TasI AATT 3 cut(s) 166, 1175, 2034
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 7 cut(s) 260, 508, 770, 914, 926, 1554, 1830
Tru1I TTAA 3 cut(s) 396, 1065, 2086
Tru9I TTAA 3 cut(s) 396, 1065, 2086
TscAI CASTG 2 cut(s) 760, 1158
TseFI GTSAC 3 cut(s) 625, 1223, 1972
TseI GCWGC 5 cut(s) 121, 874, 1085, 1862, 2027
Tsp45I GTSAC 3 cut(s) 625, 1223, 1972
TspDTI ATGAA 9 cut(s) 17, 44, 179, 188, 301, 900, 1625, 1679, 1743
TspGWI ACGGA 1 cut(s) 800
TspRI CASTG 2 cut(s) 760, 1158
Van91I CCANNNNNTGG 1 cut(s) 1565
VpaK11BI GGWCC 1 cut(s) 206
XagI CCTNNNNNAGG 2 cut(s) 1392, 1461
XapI RAATTY 3 cut(s) 166, 1175, 2034
XbaI TCTAGA 1 cut(s) 707
XceI RCATGY 3 cut(s) 864, 1205, 1324
XmnI GAANNNNTTC 1 cut(s) 1132
XspI CTAG 5 cut(s) 84, 96, 213, 474, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.