Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011764

Physical Location & Seq

Genomic Coordinates Reverse (-)

5975442 .. 5978053

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1074200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGAGAGGGAACGAGGAGAAGGTTATGGGGCCTATGTTTCCGAGGCTCCATGTGAATGATGCAGATAAAGGAGGACCAAGAGCTCCTCCAAGGAACAAGATGGCCCTCTATGAGCAGCTGAGCATCCCATCTCAGAGGTTCAATCCTGGAGTGCTGCCTCTTAATTCAAATAACCAGGGGAGTCGTTCGGATGGAAATTTGCCTTTTCCACTTCATGGTCATCCATCTACACCTACTCATCAGGCTGAGATGTTGCATGGTCGCCAGTCTGACCGAGCAAATGTGAACTTGCCCTTTGAACAAACCAACCTAACAAGGAAGATTGGAGATGAAGATGATTTTAGTGTTCCTGAGTTTGTTCAATCAAGGATGGGTCTTGGTCATAGTAAAACTCAAATTGTTAGTGACAAGGAAAAACTTACTCCCATCAGCTCGCCTCATTCTGGCCATTTAGTAAAAGTAAAAAATGCGGCGAAGAAGGATCCAAAACAAATAAGCTCCCCAACTCTGAATTTAAGACGAGAAGTAAATGCTTCACCAAATCAAGAGGATGCAGAATGTTCAGTTCCGAGATTCAACAGGTTAGCTGATAGTGATGCTTGCTTACAACAAGTGTCCAGATCTGGATCACAGCCAAACGTCACTGGACAAGGTGATGGTCTTGTTGAGTCTTCAAGGGATGTAGAGAAGGGAACTGTTTCCAGGGAAAGAAGTGTTTCTTGTTCCAGGGCGGATCCTAGCAGTCCAAATGAGGCTGATAATGACAGTGAATACCGTGGAGACAGAGCGTGTATTTCACCTCAAATGGGACATGTAGACAAAAGTGACGATGCCTCAGAGACCTCCATGGTGGATTCTATATCCGGCATGGACATCTCTCCTGATGATGTTGTAGGAATAATAGGCCAGAAACATTTCTGGACGGCAAGAAAAGCAATTGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009826 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010031 GO:0010033 GO:0010119 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048573 GO:0048580 GO:0048589 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080090 GO:0097305 GO:0104004 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

34.54

Weight (kDa)

6.56

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25930
fragaria_vesca	FvH4_2g32300 FvH4_2g32300
malus_domestica	MD08G1074100.v1.1 MD08G1074200.v1.1 MD15G1062000.v1.1
prunus_persica	Prupe.1G416000_v2.0.a1
pyrus_communis	pycom08g06130 pycom15g05860
rosa_chinensis	RchiOBHm_Chr6g0310391
rosa_laevigata	RLG00000010486
rosa_multiflora	Rmu_sc0027652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158570
rosa_rugosa	Rorug06G0379800
rosa_samantha	Rh6AG493800 Rh6BG503500 Rh6CG508700 Rh6DG494600
rosa_wichuraiana	Rw6G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	819
AciI	CCGC	2 cut(s)	473, 734
AclWI	GGATC	5 cut(s)	479, 492, 637, 731, 744
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	199, 514
AfiI	CCNNNNNNNGG	3 cut(s)	218, 446, 809
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	6 cut(s)	145, 171, 302, 365, 580, 678
AjnI	CCWGG	4 cut(s)	148, 177, 704, 728
AluBI	AGCT	5 cut(s)	86, 121, 435, 501, 590
AluI	AGCT	5 cut(s)	86, 121, 435, 501, 590
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	777, 836
AlwI	GGATC	5 cut(s)	479, 492, 637, 731, 744
AoxI	GGCC	4 cut(s)	32, 105, 448, 907
ApeKI	GCWGC	2 cut(s)	118, 157
ApoI	RAATTY	2 cut(s)	199, 514
Asp700I	GAANNNNTTC	3 cut(s)	700, 718, 917
AspS9I	GGNCC	3 cut(s)	32, 77, 106
AsuHPI	GGTGA	3 cut(s)	531, 668, 792
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	450
BamHI	GGATCC	2 cut(s)	484, 736
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	130, 144
BccI	CCATC	7 cut(s)	97, 139, 188, 235, 367, 437, 653
BceAI	ACGGC	1 cut(s)	942
BciT130I	CCWGG	4 cut(s)	150, 179, 706, 730
BcoDI	GTCTC	2 cut(s)	777, 836
BfaI	CTAG	1 cut(s)	741
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	3 cut(s)	119, 158, 474
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	3 cut(s)	120, 159, 475
Bme1390I	CCNGG	4 cut(s)	150, 179, 706, 730
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	32, 77, 106
BmiI	GGNNCC	4 cut(s)	33, 50, 486, 738
BmrFI	CCNGG	4 cut(s)	150, 179, 706, 730
BmsI	GCATC	5 cut(s)	52, 135, 544, 589, 823
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	7 cut(s)	44, 92, 178, 705, 729, 778, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 446, 809
Bse1I	ACTGG	2 cut(s)	268, 652
Bse8I	GATNNNNATC	1 cut(s)	628
BseBI	CCWGG	4 cut(s)	150, 179, 706, 730
BseDI	CCNNGG	7 cut(s)	44, 92, 178, 705, 729, 778, 849
BseGI	GGATG	6 cut(s)	126, 199, 223, 378, 559, 688
BseJI	GATNNNNATC	1 cut(s)	628
BseLI	CCNNNNNNNGG	3 cut(s)	218, 446, 809
BseMII	CTCAG	5 cut(s)	113, 149, 240, 345, 852
BseNI	ACTGG	2 cut(s)	268, 652
BseRI	GAGGAG	2 cut(s)	32, 78
BseXI	GCAGC	2 cut(s)	130, 144
BshFI	GGCC	4 cut(s)	34, 107, 450, 909
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	867
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	3 cut(s)	218, 446, 809
BsmAI	GTCTC	2 cut(s)	777, 836
BsmFI	GGGAC	1 cut(s)	825
BsnI	GGCC	4 cut(s)	34, 107, 450, 909
Bso31I	GGTCTC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	484, 623, 629, 736
Bsp1720I	GCTNAGC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	2 cut(s)	473, 734
BspANI	GGCC	4 cut(s)	34, 107, 450, 909
BspCNI	CTCAG	5 cut(s)	114, 148, 241, 346, 851
BspLI	GGNNCC	4 cut(s)	33, 50, 486, 738
BspPI	GGATC	5 cut(s)	479, 492, 637, 731, 744
BspTNI	GGTCTC	1 cut(s)	836
BsrI	ACTGG	2 cut(s)	268, 652
BssECI	CCNNGG	7 cut(s)	44, 92, 178, 705, 729, 778, 849
BssMI	GATC	4 cut(s)	484, 623, 629, 736
BssT1I	CCWWGG	2 cut(s)	92, 849
Bst2UI	CCWGG	4 cut(s)	150, 179, 706, 730
Bst4CI	ACNGT	3 cut(s)	700, 770, 779
BstC8I	GCNNGC	2 cut(s)	437, 604
BstDEI	CTNAG	5 cut(s)	122, 135, 249, 354, 838
BstDSI	CCRYGG	2 cut(s)	778, 849
BstF5I	GGATG	6 cut(s)	126, 199, 223, 378, 559, 688
BstKTI	GATC	4 cut(s)	487, 626, 632, 739
BstMAI	GTCTC	2 cut(s)	777, 836
BstMBI	GATC	4 cut(s)	484, 623, 629, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNI	CCWGG	4 cut(s)	150, 179, 706, 730
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	4 cut(s)	148, 177, 704, 728
BstV1I	GCAGC	2 cut(s)	130, 144
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	3 cut(s)	484, 623, 736
BstYI	RGATCY	3 cut(s)	484, 623, 736
BsuRI	GGCC	4 cut(s)	34, 107, 450, 909
BtgI	CCRYGG	2 cut(s)	778, 849
BtsCI	GGATG	6 cut(s)	126, 199, 223, 378, 559, 688
BtsIMutI	CAGTG	2 cut(s)	645, 775
Cac8I	GCNNGC	2 cut(s)	437, 604
Cfr13I	GGNCC	3 cut(s)	32, 77, 106
CviAII	CATG	6 cut(s)	53, 218, 260, 815, 850, 871
DdeI	CTNAG	5 cut(s)	122, 135, 249, 354, 838
DpnI	GATC	4 cut(s)	486, 625, 631, 738
DpnII	GATC	4 cut(s)	484, 623, 629, 736
EaeI	YGGCCR	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	92, 849
Eco24I	GRGCYC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	4 cut(s)	148, 177, 704, 728
EcoT14I	CCWWGG	2 cut(s)	92, 849
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	92, 849
FaeI	CATG	6 cut(s)	56, 221, 263, 818, 853, 874
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	6 cut(s)	52, 217, 259, 814, 849, 870
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	3 cut(s)	119, 158, 474
FokI	GGATG	6 cut(s)	113, 206, 210, 385, 566, 695
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	119, 158, 474
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	3 cut(s)	119, 158, 474
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	34, 107, 450, 909
HapII	CCGG	1 cut(s)	867
Hin1II	CATG	6 cut(s)	56, 221, 263, 818, 853, 874
HinfI	GANTC	4 cut(s)	184, 576, 671, 857
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	3 cut(s)	531, 668, 792
Hpy166II	GTNNAC	2 cut(s)	289, 820
Hpy188I	TCNGA	7 cut(s)	45, 138, 193, 274, 513, 573, 841
Hpy188III	TCNNGA	6 cut(s)	353, 548, 621, 627, 884, 922
Hpy8I	GTNNAC	2 cut(s)	289, 820
HpyAV	CCTTC	3 cut(s)	16, 475, 685
HpyCH4III	ACNGT	3 cut(s)	700, 770, 779
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	3 cut(s)	65, 259, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	5 cut(s)	122, 135, 249, 354, 838
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	6 cut(s)	56, 221, 263, 818, 853, 874
Kzo9I	GATC	4 cut(s)	484, 623, 629, 736
LmnI	GCTCC	3 cut(s)	54, 91, 506
Lsp1109I	GCAGC	2 cut(s)	130, 144
LweI	GCATC	5 cut(s)	52, 135, 544, 589, 823
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	3 cut(s)	407, 643, 827
MalI	GATC	4 cut(s)	486, 625, 631, 738
MboI	GATC	4 cut(s)	484, 623, 629, 736
MboII	GAAGA	5 cut(s)	16, 334, 347, 490, 666
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	3 cut(s)	484, 623, 736
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	5 cut(s)	166, 199, 399, 514, 939
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	193, 680
Mox20I	TGGCCA	1 cut(s)	450
MroXI	GAANNNNTTC	3 cut(s)	700, 718, 917
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	2 cut(s)	165, 518
MslI	CAYNNNNRTG	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	4 cut(s)	150, 179, 706, 730
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	4 cut(s)	150, 179, 706, 730
MwoI	GCNNNNNNNGC	1 cut(s)	935
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	4 cut(s)	484, 623, 629, 736
NlaIII	CATG	6 cut(s)	56, 221, 263, 818, 853, 874
NlaIV	GGNNCC	4 cut(s)	33, 50, 486, 738
NmuCI	GTSAC	3 cut(s)	407, 643, 827
NspI	RCATGY	1 cut(s)	818
PciI	ACATGT	1 cut(s)	814
PdmI	GAANNNNTTC	3 cut(s)	700, 718, 917
PfeI	GAWTC	2 cut(s)	576, 857
PflMI	CCANNNNNTGG	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	120, 159, 475
PleI	GAGTC	2 cut(s)	192, 679
PpsI	GAGTC	2 cut(s)	192, 679
PscI	ACATGT	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	4 cut(s)	148, 177, 704, 728
PspGI	CCWGG	4 cut(s)	148, 177, 704, 728
PspN4I	GGNNCC	4 cut(s)	33, 50, 486, 738
PspPI	GGNCC	3 cut(s)	32, 77, 106
PsuI	RGATCY	3 cut(s)	484, 623, 736
PvuII	CAGCTG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	165, 518
SatI	GCNGC	3 cut(s)	119, 158, 474
Sau3AI	GATC	4 cut(s)	484, 623, 629, 736
Sau96I	GGNCC	3 cut(s)	32, 77, 106
SchI	GAGTC	2 cut(s)	193, 680
ScrFI	CCNGG	4 cut(s)	150, 179, 706, 730
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	5 cut(s)	52, 135, 544, 589, 823
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	5 cut(s)	166, 199, 399, 514, 939
SsiI	CCGC	2 cut(s)	473, 734
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	4 cut(s)	148, 177, 704, 728
StyI	CCWWGG	2 cut(s)	92, 849
TaaI	ACNGT	3 cut(s)	700, 770, 779
TaiI	ACGT	1 cut(s)	645
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	166, 199, 399, 514, 939
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	576, 857
Tru1I	TTAA	2 cut(s)	165, 518
Tru9I	TTAA	2 cut(s)	165, 518
TscAI	CASTG	2 cut(s)	652, 775
TseFI	GTSAC	3 cut(s)	407, 643, 827
TseI	GCWGC	2 cut(s)	118, 157
Tsp45I	GTSAC	3 cut(s)	407, 643, 827
TspDTI	ATGAA	3 cut(s)	17, 206, 348
TspRI	CASTG	2 cut(s)	652, 775
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	2 cut(s)	199, 514
XceI	RCATGY	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	819
XmnI	GAANNNNTTC	3 cut(s)	700, 718, 917
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.