Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011764

Physical Location & Seq

Genomic Coordinates Reverse (-)

5972835 .. 5975439

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1074100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGATTTGTTGTGTATTGTGCAACTATGTTTTTGACCCGACTCCTCTTACTTTCTACAGTCAGCAAAGATTGTTTGCAGTTCAAGTATTTGAGTTGCATAGACTCATTAAGGTCCAACGACTGATTGCTGGATCTCCACATCTTTTGCTTGAAGATACTGCTTTTCTGGGCACATCTACTTTAAGGGGCTCTCCGGCAAAAAAACTCTCATCGGAGTATGTTGTAAAGCCACTTTTACATGTTGTAAAGCGTAAACACGAGCCTGAGGAGCCAAACAACAAAATGGAATGTTCTGCGGAAAATGCAGTAGGGAAAACATCTCATTCTTCTGTGAGAAATGGTAGTCAGACTTCAAATTATGGGCCATATATAGGAAACCCACAGCCAACACCTGTGGCTACCGATAATAAAGCCAATCCTTGGTGTTTCCATCAATCACCTGGACATCAGTTGTTAATTCCGGTAATGTCACCCTCTGAAGGACTTGTATACAAGCCGTATAATGGACCAGGATATATGGGAGCAGTTTGTGGAGGATGTGGACCTTTCGGCTCAACTCCCATGGCGGGCAACTTTGTTAAACCAACTTACGGGGTTCCATCTTCTCATCATCAAGGAATGGGGGTTCTTCCCGTCCCCCCCTCACTAGGTCACACTTACTTTCCTCCATATGGCATGTCTGTTATGAATCCAGCCATGTCGACCTCAGCTGTTGAGCAAATGCATTGGTTTGCTGGACCTGGTTCACATGGTCACACCGATCAGTCATCGGGAGGGGGTACAAACTCCAATTTGCAGCATCAAAGCTCATGCAACATGCCATCCCGGAAAAATGTCACTATTCCCCATGCCAAAAAGTTTCAGCCATCTAATGACAGTGGGTTACAAGGAAGTACTGCAAATAGTACAGGCGACAGAGCACCAGTGAGGACAAATCAAAATGCTGAAGGAAGCGATGCTCTCCAACTACTTCCTATGGTTCCTGTCATTCCAGACGGAGTTCCCCAATCTCACGATACAGACCAGCCAACGCGGGCGATAAAAGTTGTGCCTCACAATCCTAGAACTGCAACTGCATCAGCCGCTCGAATTTTCCAGTCCATACAAGCAGAGAGGAAACAGCAGGATTCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009826 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010031 GO:0010033 GO:0010119 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048573 GO:0048580 GO:0048589 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080090 GO:0097305 GO:0104004 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

40.66

Weight (kDa)

8.84

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25930
fragaria_vesca	FvH4_2g32300 FvH4_2g32300
malus_domestica	MD08G1074100.v1.1 MD08G1074200.v1.1 MD15G1062000.v1.1
prunus_persica	Prupe.1G416000_v2.0.a1
pyrus_communis	pycom08g06130 pycom15g05860
rosa_chinensis	RchiOBHm_Chr6g0310391
rosa_laevigata	RLG00000010486
rosa_multiflora	Rmu_sc0027652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158570
rosa_rugosa	Rorug06G0379800
rosa_samantha	Rh6AG493800 Rh6BG503500 Rh6CG508700 Rh6DG494600
rosa_wichuraiana	Rw6G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	1085
AccI	GTMKAC	2 cut(s)	489, 701
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	4 cut(s)	296, 566, 1033, 1083
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	1089
AcuI	CTGAAG	2 cut(s)	498, 966
AfaI	GTAC	3 cut(s)	781, 895, 907
AfiI	CCNNNNNNNGG	8 cut(s)	371, 420, 479, 503, 566, 590, 647, 671
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	83, 152, 354, 1131
AjnI	CCWGG	3 cut(s)	439, 508, 739
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	2 cut(s)	710, 807
AluI	AGCT	2 cut(s)	710, 807
Alw21I	GWGCWC	1 cut(s)	922
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	796
ApoI	RAATTY	1 cut(s)	1089
AspS9I	GGNCC	5 cut(s)	112, 362, 506, 542, 737
AsuC2I	CCSGG	1 cut(s)	826
AsuHPI	GGTGA	2 cut(s)	429, 462
AvaII	GGWCC	4 cut(s)	112, 506, 542, 737
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	922
BbvCI	CCTCAGC	1 cut(s)	706
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	4 cut(s)	438, 607, 829, 874
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	441, 510, 741
BcnI	CCSGG	1 cut(s)	826
BfaI	CTAG	3 cut(s)	647, 1062, 1135
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	797, 1083
BlsI	GCNGC	2 cut(s)	798, 1084
BmcAI	AGTACT	1 cut(s)	895
Bme1390I	CCNGG	4 cut(s)	441, 510, 741, 826
Bme18I	GGWCC	4 cut(s)	112, 506, 542, 737
BmgT120I	GGNCC	5 cut(s)	112, 362, 506, 542, 737
BmiI	GGNNCC	3 cut(s)	270, 597, 981
BmrFI	CCNGG	4 cut(s)	441, 510, 741, 826
BmsI	GCATC	3 cut(s)	808, 946, 1085
Bpu10I	CCTNAGC	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	826
BsaJI	CCNNGG	2 cut(s)	419, 561
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	8 cut(s)	371, 420, 479, 503, 566, 590, 647, 671
Bse1I	ACTGG	2 cut(s)	923, 1096
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	441, 510, 741
BseDI	CCNNGG	2 cut(s)	419, 561
BseGI	GGATG	2 cut(s)	542, 821
BseLI	CCNNNNNNNGG	8 cut(s)	371, 420, 479, 503, 566, 590, 647, 671
BseMII	CTCAG	2 cut(s)	255, 720
BseNI	ACTGG	2 cut(s)	923, 1096
BseRI	GAGGAG	2 cut(s)	33, 281
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	808
Bsh1236I	CGCG	1 cut(s)	1033
BshFI	GGCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	3 cut(s)	194, 461, 826
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	8 cut(s)	371, 420, 479, 503, 566, 590, 647, 671
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	173, 191, 922
Bsp143I	GATC	2 cut(s)	131, 760
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	4 cut(s)	296, 566, 1033, 1083
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	256, 719
BspFNI	CGCG	1 cut(s)	1033
BspLI	GGNNCC	3 cut(s)	270, 597, 981
BspPI	GGATC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	1085
BsrI	ACTGG	2 cut(s)	923, 1096
BssECI	CCNNGG	2 cut(s)	419, 561
BssMI	GATC	2 cut(s)	131, 760
BssNAI	GTATAC	1 cut(s)	490
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	419, 561
Bst1107I	GTATAC	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	3 cut(s)	441, 510, 741
Bst4CI	ACNGT	2 cut(s)	59, 878
BstC8I	GCNNGC	2 cut(s)	568, 1035
BstDEI	CTNAG	2 cut(s)	264, 706
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	542, 821
BstFNI	CGCG	1 cut(s)	1033
BstKTI	GATC	2 cut(s)	134, 763
BstMBI	GATC	2 cut(s)	131, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 302, 1082
BstNI	CCWGG	3 cut(s)	441, 510, 741
BstNSI	RCATGY	3 cut(s)	242, 679, 820
BstSCI	CCNGG	4 cut(s)	439, 508, 739, 824
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	1033
BstV1I	GCAGC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BstZ17I	GTATAC	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	542, 821
BtsIMutI	CAGTG	2 cut(s)	883, 930
Cac8I	GCNNGC	2 cut(s)	568, 1035
Cfr13I	GGNCC	5 cut(s)	112, 362, 506, 542, 737
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	780, 894, 906
CspCI	CAANNNNNGTGG	4 cut(s)	126, 161, 375, 410
CviAII	CATG	8 cut(s)	239, 562, 676, 697, 749, 810, 817, 848
CviQI	GTAC	3 cut(s)	780, 894, 906
DdeI	CTNAG	2 cut(s)	264, 706
DpnI	GATC	2 cut(s)	133, 762
DpnII	GATC	2 cut(s)	131, 760
Eco130I	CCWWGG	2 cut(s)	419, 561
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	4 cut(s)	112, 506, 542, 737
Eco57I	CTGAAG	2 cut(s)	498, 966
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	439, 508, 739
EcoT14I	CCWWGG	2 cut(s)	419, 561
EcoT22I	ATGCAT	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	419, 561
FaeI	CATG	8 cut(s)	242, 565, 679, 700, 752, 813, 820, 851
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	8 cut(s)	238, 561, 675, 696, 748, 809, 816, 847
FauI	CCCGC	2 cut(s)	559, 1026
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	2 cut(s)	489, 701
Fnu4HI	GCNGC	2 cut(s)	797, 1083
FokI	GGATG	2 cut(s)	549, 808
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	797, 1083
FspBI	CTAG	3 cut(s)	647, 1062, 1135
GluI	GCNGC	2 cut(s)	797, 1083
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	3 cut(s)	194, 461, 826
Hin1II	CATG	8 cut(s)	242, 565, 679, 700, 752, 813, 820, 851
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HinfI	GANTC	4 cut(s)	40, 102, 688, 1127
HpaII	CCGG	3 cut(s)	194, 461, 826
HphI	GGTGA	2 cut(s)	429, 462
Hpy166II	GTNNAC	5 cut(s)	254, 490, 542, 702, 746
Hpy188I	TCNGA	3 cut(s)	214, 348, 478
Hpy188III	TCNNGA	3 cut(s)	771, 992, 1013
Hpy8I	GTNNAC	5 cut(s)	254, 490, 542, 702, 746
HpyAV	CCTTC	2 cut(s)	473, 941
HpyCH4III	ACNGT	2 cut(s)	59, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 302, 1082
HpyF3I	CTNAG	2 cut(s)	264, 706
Hsp92II	CATG	8 cut(s)	242, 565, 679, 700, 752, 813, 820, 851
Kzo9I	GATC	2 cut(s)	131, 760
LmnI	GCTCC	2 cut(s)	268, 521
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	3 cut(s)	808, 946, 1085
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	3 cut(s)	647, 1062, 1135
MaeIII	GTNAC	5 cut(s)	468, 650, 752, 835, 882
MalI	GATC	2 cut(s)	133, 762
MbiI	CCGCTC	1 cut(s)	1085
MboI	GATC	2 cut(s)	131, 760
MboII	GAAGA	4 cut(s)	164, 318, 594, 620
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	3 cut(s)	173, 191, 922
MluCI	AATT	4 cut(s)	355, 456, 790, 1089
MlyI	GAGTC	2 cut(s)	34, 96
MmeI	TCCRAC	2 cut(s)	139, 988
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	4 cut(s)	108, 182, 455, 579
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	3 cut(s)	194, 461, 826
MspR9I	CCNGG	4 cut(s)	441, 510, 741, 826
MvaI	CCWGG	3 cut(s)	441, 510, 741
MvnI	CGCG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	3 cut(s)	268, 302, 1082
NciI	CCSGG	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	2 cut(s)	131, 760
NlaIII	CATG	8 cut(s)	242, 565, 679, 700, 752, 813, 820, 851
NlaIV	GGNNCC	3 cut(s)	270, 597, 981
NmuCI	GTSAC	4 cut(s)	468, 650, 752, 835
NsiI	ATGCAT	1 cut(s)	726
NspI	RCATGY	3 cut(s)	242, 679, 820
PciI	ACATGT	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	688, 1127
PflMI	CCANNNNNTGG	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	824
PkrI	GCNGC	2 cut(s)	798, 1084
PleI	GAGTC	2 cut(s)	34, 96
PpsI	GAGTC	2 cut(s)	34, 96
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	439, 508, 739
PspGI	CCWGG	3 cut(s)	439, 508, 739
PspN4I	GGNNCC	3 cut(s)	270, 597, 981
PspPI	GGNCC	5 cut(s)	112, 362, 506, 542, 737
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	781, 895, 907
RsaNI	GTAC	3 cut(s)	780, 894, 906
SalI	GTCGAC	1 cut(s)	700
SaqAI	TTAA	4 cut(s)	108, 182, 455, 579
SatI	GCNGC	2 cut(s)	797, 1083
Sau3AI	GATC	2 cut(s)	131, 760
Sau96I	GGNCC	5 cut(s)	112, 362, 506, 542, 737
ScaI	AGTACT	1 cut(s)	895
SchI	GAGTC	2 cut(s)	34, 96
ScrFI	CCNGG	4 cut(s)	441, 510, 741, 826
SduI	GDGCHC	3 cut(s)	173, 191, 922
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	808, 946, 1085
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	4 cut(s)	112, 506, 542, 737
Sse9I	AATT	4 cut(s)	355, 456, 790, 1089
SsiI	CCGC	4 cut(s)	296, 566, 1033, 1083
SspMI	CTAG	3 cut(s)	647, 1062, 1135
StyD4I	CCNGG	4 cut(s)	439, 508, 739, 824
StyI	CCWWGG	2 cut(s)	419, 561
TaaI	ACNGT	2 cut(s)	59, 878
TaqI	TCGA	2 cut(s)	701, 1087
TasI	AATT	4 cut(s)	355, 456, 790, 1089
TatI	WGTACW	2 cut(s)	893, 905
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	2 cut(s)	688, 1127
Tru1I	TTAA	4 cut(s)	108, 182, 455, 579
Tru9I	TTAA	4 cut(s)	108, 182, 455, 579
TscAI	CASTG	2 cut(s)	883, 930
TseFI	GTSAC	4 cut(s)	468, 650, 752, 835
TseI	GCWGC	1 cut(s)	796
Tsp45I	GTSAC	4 cut(s)	468, 650, 752, 835
TspDTI	ATGAA	1 cut(s)	701
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	2 cut(s)	883, 930
Van91I	CCANNNNNTGG	1 cut(s)	420
VpaK11BI	GGWCC	4 cut(s)	112, 506, 542, 737
XapI	RAATTY	1 cut(s)	1089
XceI	RCATGY	3 cut(s)	242, 679, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmiI	GTMKAC	2 cut(s)	489, 701
XspI	CTAG	3 cut(s)	647, 1062, 1135
ZrmI	AGTACT	1 cut(s)	895
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.