Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011764

Physical Location & Seq

Genomic Coordinates Reverse (-)

1951628 .. 1956134

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGAAGAGAGGAGGTAGAGATGATGAAAAGGTTATGGGGCCTATGTTCCCAAGACTCCATGTGAATGATGCAGATAAAGGAGGGCCAAGAGCACCTCCAAGGAACAAGATGGCCCTATATGAACAGCTTAGTATACCCTCTCAGAGGTTCAACCATGGGGTTATGCCACTCAATCAAAACAGCAATAGCAGTATGGGATCCCCAGCTTTGTCCAATCAGGGGAATGGTCCTGAAAGAAATTTGCCTTTACCAATTCATGGTCGTCCATCTATACCTACTCATCACTCTGGCCAGTCTGATGGAGTAAATGTGAACATGCCCTCAGCACAACCTCGGCAAAGAAAGAGGGCAGGAGATGAAGATGATTTTACGGTTCCTGTATTTGTTCAATCAAGGATGGGTCAATGTCAAAGTAGAACTCAAAATGGTGGTGGTAAGGCAAAACTTACTCCCTTCAGCCAGTCTCATTCTGACTGTGCAATAAAATTCAAAAGTGCATCCAAGAAGGATAATAAACAAAGTAGCTCCCCCAGTCTCAATTTAAGACCAGAATTTAGAAGTGAGACAGAAGAGGATCTCAACGCATGTAGCTCAGCTAGGGACCATTCAGTAAAAGCTGCCACAAATATCTCAACTAGAGAAATGGTTGATGTTCCTGTAAATGTGAATACTTCTCCAAATGAAGAGTATGAAGACCATCCTGTTCCTACTTTCAACAGGTCTTTTGACAGTGATGCTTGCTTACAACAAGACTCTAGATCTGGGTCCCAACTAAACAACACTGAACAGGATGATAGTCTCCTTGAGTCCACAAGGGATGTAGAGAAGGGAACTGTTTCACAGGCAAGAAGTGTTTCTCGTTACAGGGGGAATCATAGCAGTCCCAACGAGCCTGATAATGACAGTGAATACCATGTAGACAGAATGTGTATTTCAGCACAAATGGGAAATGCAGACAAAGGTGATGATGTCTCAGAGACCTCCATGGTGGATTCTATATCAGGCATGGACATCTCTCCTGATGATGTAGTAGGAATAATAGGTCAGAAACATTTCTGGAAGGCAAGAAAGGCAATTGTCAATCAGCAAAGATTGTTTGCAGTGCAAGTATTTGAGTTGCATAGACTCATTAAGGTCCAACGACTGATTGCTGGATCTCCACATCTTTTGCTTGAAGATACTGCTTTCCTAGGCACATCCTTAAGGGGTTCTCCTGCAAAGAAACTCCCGGCAGAGTATGTTGTAAAGCCACTACTAGTAAAGCGCAAGCATGAGTCTGACAAGTCAAATAACAAAATGGAATGTTCTGCTGAAAATGCGGTTGGGAAAGCTTCTCTTTCTTCTGTGAAAAATGGTAGCCAGCCTTCACAATATGGACCATATGTAGGGAGTCCACCTCCTCCAGCACCCGTGCCTGCTGATAATAAAGCAGCTCCTTGGTGCTTCCATCAGCCACCTGGGCATCAGTATTTAATTCCTGTTATGTCTCCTTCTGAAGGACTCATATACAAGCCATATAATGGACCTGGATTTGTGGGAGCAGCTTGTGGAGGATGTGGACCTTTTGGCTCAAGTCCCATGCCGGGTAACTTCATTAAGCCAGCATATGGGGTTCCGGGATCTCATCATCAAGGAATGGGGGTTCTCCCTGTCCCTCATCCTACTTACTTTCCTCCTTATGGCATGTCCGTCATGAATCACGCCATGTCAAGCTCAGCTGTTGAACAAATGAATTGGTTTGCTGGACCTGGTATGCATGGATCAACAGATCGGTTGTCAGGAAACTCTAATTTGCAGCATCAAAGCTCATGCAATATGCCAACACCCAAAAATGGAGCTATTCCTCATGCCATGAAGTCTCAAGCATCAAACCCCAGTGAGTTACAAGGAAGTACTGGTAATAGTCCCGGTGACAGAGCGCCAGTTGCGACAGATCAAAATGCTGATGAAAGTGATGCACTTCAACTTTTCCCTACTATTCCAGCAGTTCCAGAGCGAGTTCCCCAACCTCATGATACAAACCAGGCAACACGAGTGATAAGAGTTGTCCCGCACAATCCTAGATCTGCTACTGCATCAGCTGCTCGAATTTTCCAATCTATACAAGAAGAGAGAAAACAGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009826 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010031 GO:0010033 GO:0010119 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048573 GO:0048580 GO:0048589 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080090 GO:0097305 GO:0104004 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

709

Amino Acids

76.82

Weight (kDa)

7.68

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25930
fragaria_vesca	FvH4_2g32300 FvH4_2g32300
malus_domestica	MD08G1074100.v1.1 MD08G1074200.v1.1 MD15G1062000.v1.1
prunus_persica	Prupe.1G416000_v2.0.a1
pyrus_communis	pycom08g06130 pycom15g05860
rosa_chinensis	RchiOBHm_Chr6g0310391
rosa_laevigata	RLG00000010486
rosa_multiflora	Rmu_sc0027652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158570
rosa_rugosa	Rorug06G0379800
rosa_samantha	Rh6AG493800 Rh6BG503500 Rh6CG508700 Rh6DG494600
rosa_wichuraiana	Rw6G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	257, 1520, 1607
AccI	GTMKAC	2 cut(s)	133, 918
AciI	CCGC	2 cut(s)	1319, 2051
AclWI	GGATC	6 cut(s)	192, 205, 582, 1162, 1627, 1768
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	4 cut(s)	238, 485, 551, 2088
AcuI	CTGAAG	2 cut(s)	439, 1515
AfaI	GTAC	1 cut(s)	1894
AflII	CTTAAG	1 cut(s)	1201
AgsI	TTSAA	7 cut(s)	151, 389, 490, 715, 1175, 1724, 1964
AhlI	ACTAGT	1 cut(s)	1255
AjnI	CCWGG	4 cut(s)	1456, 1525, 1747, 2022
AjuI	GAANNNNNNNTTGG	2 cut(s)	1305, 1337
AloI	GAACNNNNNNTCC	2 cut(s)	1626, 1658
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	8 cut(s)	468, 539, 557, 803, 971, 976, 1491, 1863
AlwI	GGATC	6 cut(s)	192, 205, 582, 1162, 1627, 1768
AoxI	GGCC	4 cut(s)	38, 83, 111, 289
ApeKI	GCWGC	5 cut(s)	617, 1430, 1541, 1795, 2081
ApoI	RAATTY	4 cut(s)	238, 485, 551, 2088
Asp700I	GAANNNNTTC	3 cut(s)	835, 853, 1052
AspA2I	CCTAGG	1 cut(s)	1189
AspLEI	GCGC	2 cut(s)	1266, 1921
AsuC2I	CCSGG	4 cut(s)	1229, 1584, 1617, 1908
AsuHPI	GGTGA	2 cut(s)	974, 1922
AvaII	GGWCC	8 cut(s)	227, 601, 765, 1135, 1376, 1523, 1559, 1745
AvrII	CCTAGG	1 cut(s)	1189
BalI	TGGCCA	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	1348, 1380
BauI	CACGAG	1 cut(s)	2031
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	5 cut(s)	604, 1442, 1553, 1807, 2068
BccI	CCATC	6 cut(s)	103, 274, 293, 391, 705, 1455
BciT130I	CCWGG	4 cut(s)	1458, 1527, 1749, 2024
BcnI	CCSGG	4 cut(s)	1229, 1584, 1617, 1908
BcoDI	GTCTC	8 cut(s)	468, 539, 557, 803, 971, 976, 1491, 1863
BcuI	ACTAGT	1 cut(s)	1255
BfaI	CTAG	6 cut(s)	597, 636, 756, 1190, 1256, 2061
BfoI	RGCGCY	1 cut(s)	1922
BfrI	CTTAAG	1 cut(s)	1201
BglI	GCCNNNNNGGC	1 cut(s)	1459
BglII	AGATCT	2 cut(s)	758, 2063
BisI	GCNGC	5 cut(s)	618, 1431, 1542, 1796, 2082
BlnI	CCTAGG	1 cut(s)	1189
BlpI	GCTNAGC	2 cut(s)	592, 1714
BlsI	GCNGC	5 cut(s)	619, 1432, 1543, 1797, 2083
BmcAI	AGTACT	1 cut(s)	1894
Bme1390I	CCNGG	8 cut(s)	1229, 1458, 1527, 1584, 1617, 1749, 1908, 2024
Bme18I	GGWCC	8 cut(s)	227, 601, 765, 1135, 1376, 1523, 1559, 1745
BmiI	GGNNCC	7 cut(s)	39, 199, 375, 602, 766, 767, 1614
BmrFI	CCNGG	8 cut(s)	1229, 1458, 1527, 1584, 1617, 1749, 1908, 2024
BmrI	ACTGGG	2 cut(s)	525, 1869
BmsI	GCATC	8 cut(s)	58, 506, 724, 1471, 1807, 1874, 1945, 2084
BmuI	ACTGGG	2 cut(s)	525, 1869
BpiI	GAAGAC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	1381, 1413
BpmI	CTGGAG	1 cut(s)	1386
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	2 cut(s)	592, 1714
BpuEI	CTTGAG	3 cut(s)	824, 1555, 1845
BpuMI	CCSGG	4 cut(s)	1229, 1584, 1617, 1908
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	7 cut(s)	98, 154, 332, 984, 1189, 1436, 1457
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bse1I	ACTGG	6 cut(s)	292, 460, 531, 1875, 1900, 1922
BseBI	CCWGG	4 cut(s)	1458, 1527, 1749, 2024
BseDI	CCNNGG	7 cut(s)	98, 154, 332, 984, 1189, 1436, 1457
BseGI	GGATG	8 cut(s)	402, 497, 697, 796, 823, 1196, 1559, 1657
BseMII	CTCAG	5 cut(s)	155, 336, 606, 987, 1728
BseNI	ACTGG	6 cut(s)	292, 460, 531, 1875, 1900, 1922
BseRI	GAGGAG	2 cut(s)	24, 1389
BseXI	GCAGC	5 cut(s)	604, 1442, 1553, 1807, 2068
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	4 cut(s)	40, 85, 113, 291
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	4 cut(s)	1229, 1583, 1616, 1908
BslFI	GGGAC	7 cut(s)	614, 751, 867, 1560, 1637, 1890, 2033
BsmAI	GTCTC	8 cut(s)	468, 539, 557, 803, 971, 976, 1491, 1863
BsmFI	GGGAC	7 cut(s)	614, 751, 867, 1560, 1637, 1890, 2033
BsnI	GGCC	4 cut(s)	40, 85, 113, 291
Bso31I	GGTCTC	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
Bsp1720I	GCTNAGC	2 cut(s)	592, 1714
Bsp19I	CCATGG	2 cut(s)	154, 984
BspACI	CCGC	2 cut(s)	1319, 2051
BspANI	GGCC	4 cut(s)	40, 85, 113, 291
BspCNI	CTCAG	5 cut(s)	154, 335, 605, 986, 1727
BspHI	TCATGA	2 cut(s)	1692, 2011
BspLI	GGNNCC	7 cut(s)	39, 199, 375, 602, 766, 767, 1614
BspPI	GGATC	6 cut(s)	192, 205, 582, 1162, 1627, 1768
BspTI	CTTAAG	1 cut(s)	1201
BspTNI	GGTCTC	1 cut(s)	971
BsrI	ACTGG	6 cut(s)	292, 460, 531, 1875, 1900, 1922
BssECI	CCNNGG	7 cut(s)	98, 154, 332, 984, 1189, 1436, 1457
BssMI	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
BssNAI	GTATAC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	2031
BssT1I	CCWWGG	5 cut(s)	98, 154, 984, 1189, 1436
Bst1107I	GTATAC	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	2031
Bst2UI	CCWGG	4 cut(s)	1458, 1527, 1749, 2024
Bst4CI	ACNGT	6 cut(s)	373, 476, 731, 835, 905, 2121
Bst6I	CTCTTC	3 cut(s)	564, 678, 2103
BstAFI	CTTAAG	1 cut(s)	1201
BstAPI	GCANNNNNTGC	1 cut(s)	2081
BstC8I	GCNNGC	5 cut(s)	739, 1268, 1361, 1416, 1602
BstDEI	CTNAG	6 cut(s)	128, 141, 322, 592, 973, 1714
BstDSI	CCRYGG	2 cut(s)	154, 984
BstENI	CCTNNNNNAGG	2 cut(s)	142, 1494
BstF5I	GGATG	8 cut(s)	402, 497, 697, 796, 823, 1196, 1559, 1657
BstH2I	RGCGCY	1 cut(s)	1922
BstHHI	GCGC	2 cut(s)	1266, 1921
BstKTI	GATC	9 cut(s)	200, 577, 761, 1157, 1622, 1763, 1771, 1936, 2066
BstMAI	GTCTC	8 cut(s)	468, 539, 557, 803, 971, 976, 1491, 1863
BstMBI	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
BstMWI	GCNNNNNNNGC	5 cut(s)	1070, 1316, 1459, 1925, 2081
BstNI	CCWGG	4 cut(s)	1458, 1527, 1749, 2024
BstNSI	RCATGY	3 cut(s)	319, 588, 1687
BstSCI	CCNGG	8 cut(s)	1227, 1456, 1525, 1582, 1615, 1747, 1906, 2022
BstV1I	GCAGC	5 cut(s)	604, 1442, 1553, 1807, 2068
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	6 cut(s)	197, 574, 758, 1154, 1619, 2063
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	6 cut(s)	197, 574, 758, 1154, 1619, 2063
BstZ17I	GTATAC	1 cut(s)	134
BsuRI	GGCC	4 cut(s)	40, 85, 113, 291
BtgI	CCRYGG	2 cut(s)	154, 984
BtsCI	GGATG	8 cut(s)	402, 497, 697, 796, 823, 1196, 1559, 1657
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	5 cut(s)	736, 780, 910, 1107, 1882
Cac8I	GCNNGC	5 cut(s)	739, 1268, 1361, 1416, 1602
CciI	TCATGA	2 cut(s)	1692, 2011
CfoI	GCGC	2 cut(s)	1266, 1921
CsiI	ACCWGGT	1 cut(s)	1747
Csp6I	GTAC	1 cut(s)	1893
CspCI	CAANNNNNGTGG	2 cut(s)	1149, 1184
CviQI	GTAC	1 cut(s)	1893
DdeI	CTNAG	6 cut(s)	128, 141, 322, 592, 973, 1714
DpnI	GATC	9 cut(s)	199, 576, 760, 1156, 1621, 1762, 1770, 1935, 2065
DpnII	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	564, 678, 2103
EarI	CTCTTC	3 cut(s)	564, 678, 2103
Eco130I	CCWWGG	5 cut(s)	98, 154, 984, 1189, 1436
Eco31I	GGTCTC	1 cut(s)	971
Eco47I	GGWCC	8 cut(s)	227, 601, 765, 1135, 1376, 1523, 1559, 1745
Eco57I	CTGAAG	2 cut(s)	439, 1515
EcoNI	CCTNNNNNAGG	2 cut(s)	142, 1494
EcoO109I	RGGNCCY	2 cut(s)	38, 765
EcoRII	CCWGG	4 cut(s)	1456, 1525, 1747, 2022
EcoT14I	CCWWGG	5 cut(s)	98, 154, 984, 1189, 1436
EcoT22I	ATGCAT	1 cut(s)	1758
ErhI	CCWWGG	5 cut(s)	98, 154, 984, 1189, 1436
FalI	AAGNNNNNCTT	2 cut(s)	1320, 1352
FaqI	GGGAC	7 cut(s)	614, 751, 867, 1560, 1637, 1890, 2033
FauI	CCCGC	1 cut(s)	2058
FauNDI	CATATG	2 cut(s)	1381, 1606
FblI	GTMKAC	2 cut(s)	133, 918
Fnu4HI	GCNGC	5 cut(s)	618, 1431, 1542, 1796, 2082
FokI	GGATG	8 cut(s)	409, 484, 684, 803, 830, 1183, 1566, 1644
Fsp4HI	GCNGC	5 cut(s)	618, 1431, 1542, 1796, 2082
FspBI	CTAG	6 cut(s)	597, 636, 756, 1190, 1256, 2061
GlaI	GCGC	2 cut(s)	1265, 1920
GluI	GCNGC	5 cut(s)	618, 1431, 1542, 1796, 2082
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	1386
HaeII	RGCGCY	1 cut(s)	1922
HaeIII	GGCC	4 cut(s)	40, 85, 113, 291
HapII	CCGG	4 cut(s)	1229, 1583, 1616, 1908
HhaI	GCGC	2 cut(s)	1266, 1921
Hin6I	GCGC	2 cut(s)	1264, 1919
HinP1I	GCGC	2 cut(s)	1264, 1919
HindIII	AAGCTT	1 cut(s)	1329
HpaII	CCGG	4 cut(s)	1229, 1583, 1616, 1908
HphI	GGTGA	2 cut(s)	974, 1922
Hpy166II	GTNNAC	6 cut(s)	134, 313, 810, 919, 1394, 1559
Hpy188I	TCNGA	7 cut(s)	144, 298, 472, 976, 1047, 1279, 1495
Hpy188III	TCNNGA	8 cut(s)	230, 756, 1019, 1057, 1693, 1779, 1991, 2012
Hpy8I	GTNNAC	6 cut(s)	134, 313, 810, 919, 1394, 1559
HpyAV	CCTTC	7 cut(s)	463, 499, 820, 1054, 1374, 1490, 1500
HpyCH4III	ACNGT	6 cut(s)	373, 476, 731, 835, 905, 2121
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1070, 1316, 1459, 1925, 2081
HpyF3I	CTNAG	6 cut(s)	128, 141, 322, 592, 973, 1714
HspAI	GCGC	2 cut(s)	1264, 1919
KflI	GGGWCCC	1 cut(s)	765
Kzo9I	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
LmnI	GCTCC	4 cut(s)	530, 1438, 1538, 1835
Lsp1109I	GCAGC	5 cut(s)	604, 1442, 1553, 1807, 2068
LweI	GCATC	8 cut(s)	58, 506, 724, 1471, 1807, 1874, 1945, 2084
MabI	ACCWGGT	1 cut(s)	1747
MaeI	CTAG	6 cut(s)	597, 636, 756, 1190, 1256, 2061
MaeIII	GTNAC	4 cut(s)	860, 1586, 1881, 1910
MalI	GATC	9 cut(s)	199, 576, 760, 1156, 1621, 1762, 1770, 1935, 2065
MboI	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
MboII	GAAGA	8 cut(s)	16, 371, 581, 695, 704, 1187, 1332, 2120
MfeI	CAATTG	1 cut(s)	1074
MflI	RGATCY	6 cut(s)	197, 574, 758, 1154, 1619, 2063
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	7 cut(s)	48, 746, 815, 1119, 1283, 1399, 1494
MmeI	TCCRAC	1 cut(s)	1162
Mox20I	TGGCCA	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	1758
MroXI	GAANNNNTTC	3 cut(s)	835, 853, 1052
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	5 cut(s)	542, 1131, 1202, 1472, 1596
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	2 cut(s)	1718, 2081
MspCI	CTTAAG	1 cut(s)	1201
MspI	CCGG	4 cut(s)	1229, 1583, 1616, 1908
MspR9I	CCNGG	8 cut(s)	1229, 1458, 1527, 1584, 1617, 1749, 1908, 2024
MunI	CAATTG	1 cut(s)	1074
MvaI	CCWGG	4 cut(s)	1458, 1527, 1749, 2024
MwoI	GCNNNNNNNGC	5 cut(s)	1070, 1316, 1459, 1925, 2081
NciI	CCSGG	4 cut(s)	1229, 1584, 1617, 1908
NcoI	CCATGG	2 cut(s)	154, 984
NdeI	CATATG	2 cut(s)	1381, 1606
NdeII	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
NlaIV	GGNNCC	7 cut(s)	39, 199, 375, 602, 766, 767, 1614
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	1910
NsiI	ATGCAT	1 cut(s)	1758
NspI	RCATGY	3 cut(s)	319, 588, 1687
PagI	TCATGA	2 cut(s)	1692, 2011
PdmI	GAANNNNTTC	3 cut(s)	835, 853, 1052
PfeI	GAWTC	3 cut(s)	871, 992, 1696
PflMI	CCANNNNNTGG	3 cut(s)	257, 1520, 1607
PfoI	TCCNGGA	1 cut(s)	1615
PkrI	GCNGC	5 cut(s)	619, 1432, 1543, 1797, 2083
PleI	GAGTC	7 cut(s)	48, 746, 814, 1119, 1282, 1398, 1494
PpsI	GAGTC	7 cut(s)	48, 746, 814, 1119, 1282, 1398, 1494
PpuMI	RGGWCCY	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	765
Psp6I	CCWGG	4 cut(s)	1456, 1525, 1747, 2022
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	4 cut(s)	1456, 1525, 1747, 2022
PspN4I	GGNNCC	7 cut(s)	39, 199, 375, 602, 766, 767, 1614
PspPPI	RGGWCCY	1 cut(s)	765
PsuI	RGATCY	6 cut(s)	197, 574, 758, 1154, 1619, 2063
PvuII	CAGCTG	2 cut(s)	1718, 2081
RsaI	GTAC	1 cut(s)	1894
RsaNI	GTAC	1 cut(s)	1893
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	5 cut(s)	542, 1131, 1202, 1472, 1596
SatI	GCNGC	5 cut(s)	618, 1431, 1542, 1796, 2082
Sau3AI	GATC	9 cut(s)	197, 574, 758, 1154, 1619, 1760, 1768, 1933, 2063
ScaI	AGTACT	1 cut(s)	1894
SchI	GAGTC	7 cut(s)	48, 746, 815, 1119, 1283, 1399, 1494
ScrFI	CCNGG	8 cut(s)	1229, 1458, 1527, 1584, 1617, 1749, 1908, 2024
SduI	GDGCHC	1 cut(s)	94
SexAI	ACCWGGT	1 cut(s)	1747
SfaNI	GCATC	8 cut(s)	58, 506, 724, 1471, 1807, 1874, 1945, 2084
SinI	GGWCC	8 cut(s)	227, 601, 765, 1135, 1376, 1523, 1559, 1745
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	4 cut(s)	803, 1201, 1570, 1860
SmoI	CTYRAG	4 cut(s)	803, 1201, 1570, 1860
SpeI	ACTAGT	1 cut(s)	1255
SsiI	CCGC	2 cut(s)	1319, 2051
SspMI	CTAG	6 cut(s)	597, 636, 756, 1190, 1256, 2061
StyD4I	CCNGG	8 cut(s)	1227, 1456, 1525, 1582, 1615, 1747, 1906, 2022
StyI	CCWWGG	5 cut(s)	98, 154, 984, 1189, 1436
TaaI	ACNGT	6 cut(s)	373, 476, 731, 835, 905, 2121
TaqI	TCGA	1 cut(s)	2086
TatI	WGTACW	1 cut(s)	1892
TfiI	GAWTC	3 cut(s)	871, 992, 1696
Tru1I	TTAA	5 cut(s)	542, 1131, 1202, 1472, 1596
Tru9I	TTAA	5 cut(s)	542, 1131, 1202, 1472, 1596
TscAI	CASTG	5 cut(s)	736, 787, 910, 1107, 1882
TseFI	GTSAC	1 cut(s)	1910
TseI	GCWGC	5 cut(s)	617, 1430, 1541, 1795, 2081
Tsp45I	GTSAC	1 cut(s)	1910
TspGWI	ACGGA	1 cut(s)	1678
TspRI	CASTG	5 cut(s)	736, 787, 910, 1107, 1882
Van91I	CCANNNNNTGG	3 cut(s)	257, 1520, 1607
Vha464I	CTTAAG	1 cut(s)	1201
VpaK11BI	GGWCC	8 cut(s)	227, 601, 765, 1135, 1376, 1523, 1559, 1745
XagI	CCTNNNNNAGG	2 cut(s)	142, 1494
XapI	RAATTY	4 cut(s)	238, 485, 551, 2088
XbaI	TCTAGA	1 cut(s)	755
XceI	RCATGY	3 cut(s)	319, 588, 1687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1454
XmaJI	CCTAGG	1 cut(s)	1189
XmiI	GTMKAC	2 cut(s)	133, 918
XmnI	GAANNNNTTC	3 cut(s)	835, 853, 1052
XspI	CTAG	6 cut(s)	597, 636, 756, 1190, 1256, 2061
ZrmI	AGTACT	1 cut(s)	1894
Zsp2I	ATGCAT	1 cut(s)	1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.