AT2G26460

Suppressor of mec-8 and unc-52 protein homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11254932 .. 11259070
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26460.1

Sequence Viewer

Length: 1758 bp
ATGAAACCTTCAAAATCGCATCACAAGGAGAAAACCGCTCGTCGGAGAGAGGAGAAACTAGAGGAATCCGATAATCCAAAATACAGAGATCGTGCTAAAGAAAGAAGAGAGAATCAAAATCCTGATTATGATCCATCAGAGCTTAGTTCTTTCCATGCCGTTGCTCCTCCCGGAGCTGTCGATATCCGTGCTGCTGATGCACTTAAGATATCTATTGAGAACAGCAAATATCTTGGAGGTGATGTTGAACATACCCATTTAGTTAAGGGTTTGGATTATGCTTTGTTGAATAAAGTACGAAGCGAAATCGTTAAGAAACCTGATGGTGAAGATGGTGATGGTGGGAAGACTAGTGCGCCTAAGGAAGATCAGCGAGTTACTTTCCGTACCATAGCTGCAAAGTCAGTTTACCAGTGGATTGTTAAGCCTCAGACTATCATCAAGTCTAATGAGATGTTTCTTCCCGGTAGAATGACATTTGTCTATGATATGGAAGGTGGCTATACCCATGACATACCGACCACGTTATATAGGAGTAAAGCTGACTGCCCGGTGCCCGAGGAATTTGTCACAGTCAATGTTGATGGTTCTGTGCTAGATCGAATTGCTAAAATCATGTCATATCTTCGCCTTGGGTCGTCGGGGAAAGTTCTCAAGAAGAAAAAGAAAGAAAAAGATGGGAAAGGAAAGATGTCAACTATTGCTAATGATTATGATGAAGACGACAATAAATCTAAGATTGAGAATGGATCTTCTGTGAACATAAGTGACAGGGAAGTTTTACCTCCTCCTCCGCCATTACCACCTGGGATAAACCATCTGGATTTGAGTACGAAACAAGAAGAACCCCCTGTTGCCAGGACAGACGATGATGACATATTTGTTGGTGAAGGCGTCGATTACACGGTTCCTGGTAAAGATGTGACACAGAGTCCTATTTCTGAGGACATGGAAGAATCTCCCAGGGATAAGGAGAAAGTATCTTATTTCGATGAGCCTGCTTATGGTCCAGTGCAGGAGAAGGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAGCCATCTGCTGGTCAGGAATGGCAAGATATGAGTGCATATGGTGCAATGCAAACTCAAGGACTGGCTCCTGGGTACCCCGGAGAGTGGCAGGAATACCAATATGCAGAGCAAACTGGGTATCAGGAGCAGTACCTTCAACCTGGAATGGAGGGTTACGAGGTCCAACCAGAAACCGATGTTTTACTAGATCCTCAACTCATGTCGCAGGAAGAGAAAGATAGGGGTTTGGGATCGGTTTTCAAGCGTGATGACCAAAGGCTTCAACAGTTGAGGGAGAGTGACGCAAGGGAGAAAGATCCAACTTTTGTATCCGAGAGTTATTCAGAGTGTTATCCAGGTTACCAAGAGTACAACCATGAGATTGTCGGTAGTGATGAAGAACCTGATTTGTCTAAAATGGACATGGGTGGAAAGGCAAAGGGTGGTTTACATCGATGGGACTTTGAGACAGAAGAGGAATGGGAAAAATATAATGAGCAGAAGGAAGCGATGCCAAAAGCGGCGTTCCAATTCGGGGTAAAGATGCAAGATGGTCGAAAGACAAGGAAGCAGAACCGTGACCGTGACCAGAAGCTCAATAATGAACTTCACCAGATCAATAAGATACTTACGAGAAAGAAGATGGAGAAGGAGGGTGGGGATGTTGCTTCTTTGGATGCCGCCGAGGCACAAACTCCTAAGAGATCCAAGCATTGA

Protein Analysis

585

Amino Acids

66.33

Weight (kDa)

5.09

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RED_N PF07808 5 - 222 2.4e-83 RED-like protein N-terminal region
RED_C PF07807 461 - 569 3.8e-47 RED-like protein C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1024, 1134
AccB1I GGYRCC 3 cut(s) 553, 1024, 1134
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 4 cut(s) 36, 794, 1562, 1722
AclWI GGATC 6 cut(s) 125, 757, 1244, 1300, 1352, 1740
AcsI RAATTY 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 7 cut(s) 297, 388, 832, 1026, 1136, 1193, 1412
AfiI CCNNNNNNNGG 6 cut(s) 42, 1004, 1049, 1070, 1146, 1576
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 6 cut(s) 12, 248, 289, 1199, 1303, 1325
AhdI GACNNNNNGTC 1 cut(s) 930
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 7 cut(s) 805, 857, 910, 962, 1129, 1201, 1396
AluBI AGCT 5 cut(s) 142, 176, 395, 542, 1636
AluI AGCT 5 cut(s) 142, 176, 395, 542, 1636
Alw26I GTCTC 1 cut(s) 1502
AlwI GGATC 6 cut(s) 125, 757, 1244, 1300, 1352, 1740
Ama87I CYCGRG 1 cut(s) 557
ApeKI GCWGC 3 cut(s) 191, 395, 1060
ApoI RAATTY 1 cut(s) 563
Asp718I GGTACC 2 cut(s) 1024, 1134
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 1007, 1052, 1222
AsuC2I CCSGG 4 cut(s) 171, 465, 551, 1140
AsuHPI GGTGA 5 cut(s) 251, 338, 347, 899, 1643
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 3 cut(s) 1007, 1052, 1222
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 558
BaeI ACNNNNGTAYC 2 cut(s) 1353, 1386
BanI GGYRCC 3 cut(s) 553, 1024, 1134
BbsI GAAGAC 2 cut(s) 353, 726
BbvI GCAGC 3 cut(s) 178, 382, 1072
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 6 cut(s) 170, 204, 980, 1014, 1577, 1611
BciT130I CCWGG 7 cut(s) 807, 859, 912, 964, 1131, 1203, 1398
BciVI GTATCC 1 cut(s) 1381
BcnI CCSGG 4 cut(s) 171, 465, 551, 1140
BcoDI GTCTC 1 cut(s) 1502
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 4 cut(s) 59, 351, 596, 1247
BfrI CTTAAG 1 cut(s) 203
BfuI GTATCC 1 cut(s) 1381
BglI GCCNNNNNGGC 1 cut(s) 1727
BisI GCNGC 5 cut(s) 192, 396, 1061, 1563, 1722
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 5 cut(s) 193, 397, 1062, 1564, 1723
Bme18I GGWCC 3 cut(s) 1007, 1052, 1222
BmeRI GACNNNNNGTC 1 cut(s) 930
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 3 cut(s) 1007, 1052, 1222
BmiI GGNNCC 5 cut(s) 555, 909, 1026, 1128, 1136
BmrI ACTGGG 1 cut(s) 1185
BmsI GCATC 5 cut(s) 28, 187, 1542, 1575, 1708
BmuI ACTGGG 1 cut(s) 1185
BoxI GACNNNNGTC 1 cut(s) 479
BpiI GAAGAC 2 cut(s) 353, 726
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 638, 1101
BpuMI CCSGG 4 cut(s) 171, 465, 551, 1140
Bsa29I ATCGAT 1 cut(s) 1495
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 894
BsaJI CCNNGG 8 cut(s) 558, 631, 806, 962, 963, 1130, 1138, 1725
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 1004, 1049, 1070, 1146, 1576
Bse1I ACTGG 5 cut(s) 412, 1010, 1055, 1128, 1180
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 7 cut(s) 807, 859, 912, 964, 1131, 1203, 1398
BseCI ATCGAT 1 cut(s) 1495
BseDI CCNNGG 8 cut(s) 558, 631, 806, 962, 963, 1130, 1138, 1725
BseGI GGATG 2 cut(s) 1708, 1723
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 6 cut(s) 42, 1004, 1049, 1070, 1146, 1576
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 443, 933, 1029
BseNI ACTGG 5 cut(s) 412, 1010, 1055, 1128, 1180
BseRI GAGGAG 4 cut(s) 65, 156, 777, 780
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 3 cut(s) 178, 382, 1072
BsgI GTGCAG 2 cut(s) 1034, 1079
BshNI GGYRCC 3 cut(s) 553, 1024, 1134
BshVI ATCGAT 1 cut(s) 1495
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 4 cut(s) 171, 465, 551, 1140
BslFI GGGAC 1 cut(s) 1514
BslI CCNNNNNNNGG 6 cut(s) 42, 1004, 1049, 1070, 1146, 1576
BsmAI GTCTC 1 cut(s) 1502
BsmFI GGGAC 1 cut(s) 1514
BsoBI CYCGRG 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 1038
BspACI CCGC 4 cut(s) 36, 794, 1562, 1722
BspCNI CTCAG 3 cut(s) 442, 934, 1030
BspDI ATCGAT 1 cut(s) 1495
BspLI GGNNCC 5 cut(s) 555, 909, 1026, 1128, 1136
BspPI GGATC 6 cut(s) 125, 757, 1244, 1300, 1352, 1740
BspT107I GGYRCC 3 cut(s) 553, 1024, 1134
BspTI CTTAAG 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 1113
BsrI ACTGG 5 cut(s) 412, 1010, 1055, 1128, 1180
BssECI CCNNGG 8 cut(s) 558, 631, 806, 962, 963, 1130, 1138, 1725
BssNI GRCGYC 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 7 cut(s) 807, 859, 912, 964, 1131, 1203, 1398
Bst4CI ACNGT 5 cut(s) 574, 907, 1329, 1619, 1625
Bst6I CTCTTC 3 cut(s) 100, 1266, 1509
BstACI GRCGYC 1 cut(s) 894
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstC8I GCNNGC 2 cut(s) 999, 1044
BstDEI CTNAG 7 cut(s) 143, 360, 429, 735, 942, 1038, 1740
BstEII GGTNACC 1 cut(s) 1400
BstF5I GGATG 2 cut(s) 1708, 1723
BstHHI GCGC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 1502
BstMWI GCNNNNNNNGC 4 cut(s) 197, 1043, 1103, 1727
BstNI CCWGG 7 cut(s) 807, 859, 912, 964, 1131, 1203, 1398
BstPAI GACNNNNGTC 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 1400
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 3 cut(s) 178, 382, 1072
BstV2I GAAGAC 2 cut(s) 353, 726
BstX2I RGATCY 4 cut(s) 749, 1249, 1357, 1745
BstYI RGATCY 4 cut(s) 749, 1249, 1357, 1745
Bsu15I ATCGAT 1 cut(s) 1495
Bsu36I CCTNAGG 1 cut(s) 360
BsuI GTATCC 1 cut(s) 1381
BsuTUI ATCGAT 1 cut(s) 1495
BtgZI GCGATG 1 cut(s) 1565
BtsCI GGATG 2 cut(s) 1708, 1723
BtsIMutI CAGTG 3 cut(s) 419, 1017, 1062
Cac8I GCNNGC 2 cut(s) 999, 1044
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 1007, 1052, 1222
ClaI ATCGAT 1 cut(s) 1495
CseI GACGC 2 cut(s) 883, 1352
Csp6I GTAC 7 cut(s) 296, 387, 831, 1025, 1135, 1192, 1411
CviAII CATG 7 cut(s) 155, 509, 616, 949, 1261, 1418, 1465
CviQI GTAC 7 cut(s) 296, 387, 831, 1025, 1135, 1192, 1411
DdeI CTNAG 7 cut(s) 143, 360, 429, 735, 942, 1038, 1740
DriI GACNNNNNGTC 1 cut(s) 930
Eam1104I CTCTTC 3 cut(s) 100, 1266, 1509
Eam1105I GACNNNNNGTC 1 cut(s) 930
EarI CTCTTC 3 cut(s) 100, 1266, 1509
EciI GGCGGA 1 cut(s) 783
Eco130I CCWWGG 1 cut(s) 631
Eco32I GATATC 2 cut(s) 184, 210
Eco47I GGWCC 3 cut(s) 1007, 1052, 1222
Eco81I CCTNAGG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 1400
EcoO65I GGTNACC 1 cut(s) 1400
EcoRII CCWGG 7 cut(s) 805, 857, 910, 962, 1129, 1201, 1396
EcoRV GATATC 2 cut(s) 184, 210
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 7 cut(s) 158, 512, 619, 952, 1264, 1421, 1468
FaqI GGGAC 1 cut(s) 1514
FatI CATG 7 cut(s) 154, 508, 615, 948, 1260, 1417, 1464
FauNDI CATATG 1 cut(s) 1099
Fnu4HI GCNGC 5 cut(s) 192, 396, 1061, 1563, 1722
FokI GGATG 2 cut(s) 1715, 1730
Fsp4HI GCNGC 5 cut(s) 192, 396, 1061, 1563, 1722
FspBI CTAG 4 cut(s) 59, 351, 596, 1247
GlaI GCGC 1 cut(s) 357
GluI GCNGC 5 cut(s) 192, 396, 1061, 1563, 1722
HapII CCGG 4 cut(s) 171, 465, 551, 1140
HgaI GACGC 2 cut(s) 883, 1352
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 7 cut(s) 158, 512, 619, 952, 1264, 1421, 1468
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 4 cut(s) 65, 112, 931, 956
HpaII CCGG 4 cut(s) 171, 465, 551, 1140
HphI GGTGA 5 cut(s) 251, 338, 347, 899, 1643
Hpy166II GTNNAC 4 cut(s) 409, 696, 760, 1490
Hpy188I TCNGA 7 cut(s) 45, 70, 139, 432, 943, 1375, 1387
Hpy188III TCNNGA 5 cut(s) 122, 655, 821, 1076, 1184
Hpy8I GTNNAC 4 cut(s) 409, 696, 760, 1490
Hpy99I CGWCG 3 cut(s) 45, 643, 899
HpyAV CCTTC 7 cut(s) 18, 488, 884, 1015, 1205, 1537, 1684
HpyCH4III ACNGT 5 cut(s) 574, 907, 1329, 1619, 1625
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 9 cut(s) 200, 398, 1015, 1060, 1097, 1106, 1111, 1166, 1588
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 1043, 1103, 1727
HpyF3I CTNAG 7 cut(s) 143, 360, 429, 735, 942, 1038, 1740
HpySE526I ACGT 1 cut(s) 524
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 7 cut(s) 158, 512, 619, 952, 1264, 1421, 1468
HspAI GCGC 1 cut(s) 356
KpnI GGTACC 2 cut(s) 1028, 1138
LmnI GCTCC 4 cut(s) 169, 173, 1132, 1186
Lsp1109I GCAGC 3 cut(s) 178, 382, 1072
LweI GCATC 5 cut(s) 28, 187, 1542, 1575, 1708
MaeI CTAG 4 cut(s) 59, 351, 596, 1247
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 9 cut(s) 376, 568, 767, 922, 1214, 1340, 1400, 1619, 1625
MbiI CCGCTC 1 cut(s) 38
MflI RGATCY 4 cut(s) 749, 1249, 1357, 1745
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 3 cut(s) 563, 603, 1571
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 3 cut(s) 23, 1249, 1385
MseI TTAA 4 cut(s) 204, 264, 312, 423
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 4 cut(s) 171, 465, 551, 1140
MvaI CCWGG 7 cut(s) 807, 859, 912, 964, 1131, 1203, 1398
MwoI GCNNNNNNNGC 4 cut(s) 197, 1043, 1103, 1727
NciI CCSGG 4 cut(s) 171, 465, 551, 1140
NdeI CATATG 1 cut(s) 1099
NlaIII CATG 7 cut(s) 158, 512, 619, 952, 1264, 1421, 1468
NlaIV GGNNCC 5 cut(s) 555, 909, 1026, 1128, 1136
NmeAIII GCCGAG 1 cut(s) 1750
NmuCI GTSAC 6 cut(s) 568, 767, 922, 1340, 1619, 1625
PasI CCCWGGG 1 cut(s) 963
PfeI GAWTC 3 cut(s) 65, 112, 956
PflMI CCANNNNNTGG 1 cut(s) 1070
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 5 cut(s) 193, 397, 1062, 1564, 1723
PleI GAGTC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 939
PshAI GACNNNNGTC 1 cut(s) 479
Psp6I CCWGG 7 cut(s) 805, 857, 910, 962, 1129, 1201, 1396
PspEI GGTNACC 1 cut(s) 1400
PspGI CCWGG 7 cut(s) 805, 857, 910, 962, 1129, 1201, 1396
PspN4I GGNNCC 5 cut(s) 555, 909, 1026, 1128, 1136
PspPI GGNCC 3 cut(s) 1007, 1052, 1222
PsuI RGATCY 4 cut(s) 749, 1249, 1357, 1745
RsaI GTAC 7 cut(s) 297, 388, 832, 1026, 1136, 1193, 1412
RsaNI GTAC 7 cut(s) 296, 387, 831, 1025, 1135, 1192, 1411
SaqAI TTAA 4 cut(s) 204, 264, 312, 423
SatI GCNGC 5 cut(s) 192, 396, 1061, 1563, 1722
Sau96I GGNCC 3 cut(s) 1007, 1052, 1222
SchI GAGTC 1 cut(s) 940
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 5 cut(s) 28, 187, 1542, 1575, 1708
SinI GGWCC 3 cut(s) 1007, 1052, 1222
SmlI CTYRAG 3 cut(s) 203, 653, 1116
SmoI CTYRAG 3 cut(s) 203, 653, 1116
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 3 cut(s) 563, 603, 1571
SsiI CCGC 4 cut(s) 36, 794, 1562, 1722
SspMI CTAG 4 cut(s) 59, 351, 596, 1247
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 5 cut(s) 574, 907, 1329, 1619, 1625
TaiI ACGT 1 cut(s) 527
TaqI TCGA 6 cut(s) 180, 601, 897, 990, 1495, 1597
TasI AATT 3 cut(s) 563, 603, 1571
TatI WGTACW 1 cut(s) 1410
TauI GCSGC 2 cut(s) 1565, 1724
TfiI GAWTC 3 cut(s) 65, 112, 956
Tru1I TTAA 4 cut(s) 204, 264, 312, 423
Tru9I TTAA 4 cut(s) 204, 264, 312, 423
TscAI CASTG 3 cut(s) 419, 1017, 1062
TseFI GTSAC 6 cut(s) 568, 767, 922, 1340, 1619, 1625
TseI GCWGC 3 cut(s) 191, 395, 1060
Tsp45I GTSAC 6 cut(s) 568, 767, 922, 1340, 1619, 1625
TspDTI ATGAA 4 cut(s) 17, 732, 1452, 1659
TspGWI ACGGA 2 cut(s) 176, 374
TspRI CASTG 3 cut(s) 419, 1017, 1062
Van91I CCANNNNNTGG 1 cut(s) 1070
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 1007, 1052, 1222
XapI RAATTY 1 cut(s) 563
XspI CTAG 4 cut(s) 59, 351, 596, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.