Rorug02G0055800

Suppressor of mec-8 and unc-52 protein homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
4338682 .. 4342426
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0055800.1

Sequence Viewer

Length: 939 bp
ATGGCGGGAGGCGGGAGCAGGAAAGACGAGTCGGTGGTGCTGAACAGCACGAACGTGTTTGCGGCGCTGGGGAGCTTGAAGAAGAAGAAGAAGTCCGATAAGTCAAAGAGTGGGAAGAGCGGTCAGGCCGAGCCGGAGAAGGAAGTTTATTGGGCCCCGGCGCCGCTCACCGTCAAGTCATGGGCCGATGTCGATGACGAGGATGATGACGACTACTTTGCGACTACTGCGCCGCCGGAATTGGGCTGGGCCGGCGGTGACTCCAAGGACCACAAGGAGAGTGATCTGGAGCCTGAGCATGTGGAGGTAAGTGACAGTGAAGAGGAAGGTCTCGATGATGTTGATGATGATGTGGACGAGGATCATGATAACGAACTTGAAGCACCAGTTGAAACTGAGACAGGTAAGAAGCTAGCTGAAGCTTCTACAGCTCCTAAGGATACAGAAAGGCAGCTTTCTAAGAAGGAACTGAAGAAAAAAGGACTTGAAGAACTGGAAGCAGTTCTTGCTGAGCTAGGACTTGGCAAAAATGAGACCAGTGGCCACATTGAATCTGGAGATGGTGCCCAAGAGAAGAAATTAGAGAACCTAAACGGTGACATAGACAAGAAGGAAACCTCTGGGGAGAGCAAAAGTGCCAAAAAGAAGAAAAAGAAGGATAAGTCATCGAAGGAGTCGAGAGAATCCCAGGACCAGCCTGATGGCGTTGGAAATGCAGCAGCAGAAGAAACCACTGAAACCGAGAAGGTAGAAGATACGTCAACTGGTGATGTTAAAGAGCGGCTAAAGAAAGTGGCATCTATGAAGAAGAAGAAATCAAGCAAGGAAATGGATGCTGCAGCCCGAGCTGCTGCAAGTGAAGCTGCTGCCAGGAATGCTAGGCTAGCTTCAGCAAAGAAAAAAGAGAAGAATCACTACAATCAGCAGCCGGTGCGATAA

Protein Analysis

312

Amino Acids

33.82

Weight (kDa)

5.0

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 160, 563
AccBSI CCGCTC 3 cut(s) 120, 166, 781
AciI CCGC 8 cut(s) 5, 12, 62, 120, 164, 233, 255, 781
AclWI GGATC 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 3 cut(s) 438, 491, 873
AcyI GRCGYC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 5 cut(s) 79, 380, 392, 488, 551
AjnI CCWGG 2 cut(s) 687, 869
AleI CACNNNNGTG 1 cut(s) 53
Alw26I GTCTC 3 cut(s) 335, 392, 527
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 5 cut(s) 126, 153, 183, 249, 541
ApaI GGGCCC 1 cut(s) 157
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 3 cut(s) 67, 163, 232
AspS9I GGNCC 6 cut(s) 153, 154, 183, 249, 268, 691
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 160, 269, 608, 779
AsuNHI GCTAGC 2 cut(s) 412, 883
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 268, 691
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 157, 568
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 2 cut(s) 160, 563
BanII GRGCYC 1 cut(s) 157
BarI GAAGNNNNNNTAC 2 cut(s) 899, 931
BbvI GCAGC 9 cut(s) 463, 728, 731, 823, 835, 838, 850, 851, 853
BccI CCATC 2 cut(s) 554, 695
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 2 cut(s) 689, 871
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 3 cut(s) 335, 392, 527
BfaI CTAG 4 cut(s) 413, 515, 879, 884
BfmI CTRYAG 2 cut(s) 426, 837
BfoI RGCGCY 2 cut(s) 68, 164
BfuI GTATCC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 510
Bme1390I CCNGG 3 cut(s) 158, 689, 871
Bme18I GGWCC 2 cut(s) 268, 691
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 6 cut(s) 153, 154, 183, 249, 268, 691
BmiI GGNNCC 5 cut(s) 155, 156, 162, 291, 565
BmrFI CCNGG 3 cut(s) 158, 689, 871
BmsI GCATC 2 cut(s) 806, 823
BmtI GCTAGC 2 cut(s) 416, 887
BpmI CTGGAG 2 cut(s) 308, 576
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 161
BsaI GGTCTC 2 cut(s) 335, 527
BsaJI CCNNGG 3 cut(s) 156, 264, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse118I RCCGGY 2 cut(s) 251, 928
Bse1I ACTGG 4 cut(s) 386, 498, 537, 769
Bse21I CCTNAGG 1 cut(s) 435
BseBI CCWGG 2 cut(s) 689, 871
BseDI CCNNGG 3 cut(s) 156, 264, 687
BseGI GGATG 2 cut(s) 208, 838
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 3 cut(s) 285, 387, 501
BseNI ACTGG 4 cut(s) 386, 498, 537, 769
BseSI GKGCMC 2 cut(s) 157, 568
BseXI GCAGC 9 cut(s) 463, 728, 731, 823, 835, 838, 850, 851, 853
BseYI CCCAGC 2 cut(s) 67, 246
BshFI GGCC 5 cut(s) 128, 155, 185, 251, 543
BshNI GGYRCC 2 cut(s) 160, 563
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 5 cut(s) 134, 158, 236, 252, 929
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 335, 392, 527
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 5 cut(s) 128, 155, 185, 251, 543
Bso31I GGTCTC 2 cut(s) 335, 527
BsoBI CYCGRG 1 cut(s) 843
Bsp120I GGGCCC 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 157, 568
Bsp143I GATC 2 cut(s) 283, 361
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 8 cut(s) 5, 12, 62, 120, 164, 233, 255, 781
BspANI GGCC 5 cut(s) 128, 155, 185, 251, 543
BspCNI CTCAG 3 cut(s) 286, 388, 502
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 5 cut(s) 155, 156, 162, 291, 565
BspMAI CTGCAG 1 cut(s) 841
BspOI GCTAGC 2 cut(s) 416, 887
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 160, 563
BspTNI GGTCTC 2 cut(s) 335, 527
BsrBI CCGCTC 3 cut(s) 120, 166, 781
BsrFI RCCGGY 2 cut(s) 251, 928
BsrI ACTGG 4 cut(s) 386, 498, 537, 769
BssAI RCCGGY 2 cut(s) 251, 928
BssECI CCNNGG 3 cut(s) 156, 264, 687
BssMI GATC 2 cut(s) 283, 361
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 689, 871
Bst4CI ACNGT 3 cut(s) 172, 317, 596
Bst6I CTCTTC 2 cut(s) 110, 315
BstACI GRCGYC 1 cut(s) 161
BstAPI GCANNNNNTGC 2 cut(s) 506, 931
BstC8I GCNNGC 3 cut(s) 253, 414, 885
BstDEI CTNAG 5 cut(s) 294, 396, 435, 459, 510
BstF5I GGATG 2 cut(s) 208, 838
BstH2I RGCGCY 2 cut(s) 68, 164
BstHHI GCGC 3 cut(s) 67, 163, 232
BstKTI GATC 2 cut(s) 286, 364
BstMAI GTCTC 3 cut(s) 335, 392, 527
BstMBI GATC 2 cut(s) 283, 361
BstNI CCWGG 2 cut(s) 689, 871
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 156, 687, 869
BstSFI CTRYAG 2 cut(s) 426, 837
BstSLI GKGCMC 2 cut(s) 157, 568
BstV1I GCAGC 9 cut(s) 463, 728, 731, 823, 835, 838, 850, 851, 853
BstXI CCANNNNNNTGG 1 cut(s) 701
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 5 cut(s) 128, 155, 185, 251, 543
BtsCI GGATG 2 cut(s) 208, 838
BtsIMutI CAGTG 3 cut(s) 322, 544, 732
Cac8I GCNNGC 3 cut(s) 253, 414, 885
CciI TCATGA 1 cut(s) 364
CfoI GCGC 3 cut(s) 67, 163, 232
Cfr10I RCCGGY 2 cut(s) 251, 928
Cfr13I GGNCC 6 cut(s) 153, 154, 183, 249, 268, 691
CviAII CATG 3 cut(s) 180, 299, 365
DdeI CTNAG 5 cut(s) 294, 396, 435, 459, 510
DinI GGCGCC 1 cut(s) 162
DpnI GATC 2 cut(s) 285, 363
DpnII GATC 2 cut(s) 283, 361
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 2 cut(s) 110, 315
EarI CTCTTC 2 cut(s) 110, 315
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 2 cut(s) 335, 527
Eco47I GGWCC 2 cut(s) 268, 691
Eco57I CTGAAG 3 cut(s) 438, 491, 873
Eco81I CCTNAGG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 687, 869
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 157
EgeI GGCGCC 1 cut(s) 162
EheI GGCGCC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 183, 302, 368
FaiI YATR 5 cut(s) 181, 300, 366, 602, 803
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 3 cut(s) 179, 298, 364
FauI CCCGC 1 cut(s) 5
FokI GGATG 2 cut(s) 215, 845
FriOI GRGCYC 1 cut(s) 157
FspBI CTAG 4 cut(s) 413, 515, 879, 884
GlaI GCGC 3 cut(s) 66, 162, 231
GsaI CCCAGC 2 cut(s) 71, 250
GsuI CTGGAG 2 cut(s) 308, 576
HaeII RGCGCY 2 cut(s) 68, 164
HaeIII GGCC 5 cut(s) 128, 155, 185, 251, 543
HapII CCGG 5 cut(s) 134, 158, 236, 252, 929
HhaI GCGC 3 cut(s) 67, 163, 232
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 3 cut(s) 183, 302, 368
Hin6I GCGC 3 cut(s) 65, 161, 230
HinP1I GCGC 3 cut(s) 65, 161, 230
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 6 cut(s) 29, 260, 551, 674, 683, 910
HpaII CCGG 5 cut(s) 134, 158, 236, 252, 929
HphI GGTGA 4 cut(s) 160, 269, 608, 779
Hpy166II GTNNAC 2 cut(s) 355, 762
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 5 cut(s) 287, 332, 365, 555, 678
Hpy8I GTNNAC 2 cut(s) 355, 762
HpyAV CCTTC 7 cut(s) 133, 320, 457, 604, 649, 664, 739
HpyCH4III ACNGT 3 cut(s) 172, 317, 596
HpyCH4IV ACGT 2 cut(s) 54, 758
HpyCH4V TGCA 3 cut(s) 716, 839, 854
HpyF3I CTNAG 5 cut(s) 294, 396, 435, 459, 510
HpySE526I ACGT 2 cut(s) 54, 758
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 3 cut(s) 183, 302, 368
HspAI GCGC 3 cut(s) 65, 161, 230
KasI GGCGCC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 283, 361
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 4 cut(s) 15, 72, 289, 436
Lsp1109I GCAGC 9 cut(s) 463, 728, 731, 823, 835, 838, 850, 851, 853
LweI GCATC 2 cut(s) 806, 823
MaeI CTAG 4 cut(s) 413, 515, 879, 884
MaeII ACGT 2 cut(s) 54, 758
MaeIII GTNAC 3 cut(s) 257, 311, 596
MalI GATC 2 cut(s) 285, 363
MbiI CCGCTC 3 cut(s) 120, 166, 781
MboI GATC 2 cut(s) 283, 361
MhlI GDGCHC 2 cut(s) 157, 568
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 2 cut(s) 239, 578
MluNI TGGCCA 1 cut(s) 543
Mly113I GGCGCC 1 cut(s) 161
MlyI GAGTC 3 cut(s) 38, 254, 683
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 5 cut(s) 193, 298, 316, 352, 628
Mox20I TGGCCA 1 cut(s) 543
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 543
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 543
MspI CCGG 5 cut(s) 134, 158, 236, 252, 929
MspR9I CCNGG 3 cut(s) 158, 689, 871
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 2 cut(s) 689, 871
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 161
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 283, 361
NgoMIV GCCGGC 1 cut(s) 251
NheI GCTAGC 2 cut(s) 412, 883
NlaIII CATG 3 cut(s) 183, 302, 368
NlaIV GGNNCC 5 cut(s) 155, 156, 162, 291, 565
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 257, 311, 596
NspI RCATGY 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 53
PagI TCATGA 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PctI GAATGC 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 551, 683, 910
PleI GAGTC 3 cut(s) 37, 254, 682
PluTI GGCGCC 1 cut(s) 164
PpsI GAGTC 3 cut(s) 37, 254, 682
Psp6I CCWGG 2 cut(s) 687, 869
PspFI CCCAGC 2 cut(s) 67, 246
PspGI CCWGG 2 cut(s) 687, 869
PspN4I GGNNCC 5 cut(s) 155, 156, 162, 291, 565
PspOMI GGGCCC 1 cut(s) 153
PspPI GGNCC 6 cut(s) 153, 154, 183, 249, 268, 691
PstI CTGCAG 1 cut(s) 841
RseI CAYNNNNRTG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 774
Sau3AI GATC 2 cut(s) 283, 361
Sau96I GGNCC 6 cut(s) 153, 154, 183, 249, 268, 691
SchI GAGTC 3 cut(s) 38, 254, 683
ScrFI CCNGG 3 cut(s) 158, 689, 871
SduI GDGCHC 2 cut(s) 157, 568
SfaNI GCATC 2 cut(s) 806, 823
SfcI CTRYAG 2 cut(s) 426, 837
SfoI GGCGCC 1 cut(s) 162
SinI GGWCC 2 cut(s) 268, 691
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 2 cut(s) 239, 578
SsiI CCGC 8 cut(s) 5, 12, 62, 120, 164, 233, 255, 781
SspDI GGCGCC 1 cut(s) 160
SspMI CTAG 4 cut(s) 413, 515, 879, 884
StyD4I CCNGG 3 cut(s) 156, 687, 869
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 172, 317, 596
TaiI ACGT 2 cut(s) 57, 761
TaqI TCGA 4 cut(s) 192, 333, 668, 677
TasI AATT 2 cut(s) 239, 578
TauI GCSGC 4 cut(s) 65, 166, 235, 784
TfiI GAWTC 3 cut(s) 551, 683, 910
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 3 cut(s) 322, 544, 739
TseFI GTSAC 3 cut(s) 257, 311, 596
Tsp45I GTSAC 3 cut(s) 257, 311, 596
TspDTI ATGAA 1 cut(s) 818
TspRI CASTG 3 cut(s) 322, 544, 739
VpaK11BI GGWCC 2 cut(s) 268, 691
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 4 cut(s) 413, 515, 879, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.