Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006286

Physical Location & Seq

Genomic Coordinates Reverse (-)

5114990 .. 5115534

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGGAATGCGAGAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGGTCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCGGCAAGTTCACCTGGGCCGGTGATCTGGGCTACTCCACAGCCGAGATGGGTTTTCAGAAGGAAGTCATAGACGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

78

Amino Acids

8.3

Weight (kDa)

8.96

Isoelectric Point (pI)

8.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26460
fragaria_vesca	FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440
malus_domestica	MD02G1102700.v1.1 MD15G1223900.v1.1
prunus_persica	Prupe.7G191600_v2.0.a1 Prupe.7G191600_v2.0.a1
pyrus_communis	pycom02g08040 pycom15g19810
rosa_chinensis	RchiOBHm_Chr2g0095991
rosa_laevigata	RLG00000016615 RLG00000016631
rosa_multiflora	Rmu_sc0002497.1_g000011 Rmu_sc0018414.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145880
rosa_rugosa	Rorug02G0055700 Rorug02G0055800 Rorug02G0065300
rosa_samantha	Rh2AG103600 Rh2BG105100 Rh2CG107600 Rh2DG105500
rosa_wichuraiana	Rw2G007900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	5 cut(s)	57, 100, 191, 204, 217
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	128
AlwI	GGATC	5 cut(s)	57, 100, 191, 204, 217
AoxI	GGCC	2 cut(s)	109, 132
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	67, 118, 149
BalI	TGGCCA	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	112, 129, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	112, 129, 192
BseLI	CCNNNNNNNGG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	111, 134
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	111, 134
Bsp143I	GATC	5 cut(s)	49, 92, 139, 196, 222
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	111, 134
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	5 cut(s)	57, 100, 191, 204, 217
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	112, 129, 192
BssMI	GATC	5 cut(s)	49, 92, 139, 196, 222
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	112, 192
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	11, 217
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	52, 95, 142, 199, 225
BstMBI	GATC	5 cut(s)	49, 92, 139, 196, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	196, 222
BstYI	RGATCY	2 cut(s)	196, 222
BsuRI	GGCC	2 cut(s)	111, 134
BtgI	CCRYGG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	2 cut(s)	85, 113
CviJI	RGCY	4 cut(s)	111, 134, 147, 158
CviKI_1	RGCY	4 cut(s)	111, 134, 147, 158
DpnI	GATC	5 cut(s)	51, 94, 141, 198, 224
DpnII	GATC	5 cut(s)	49, 92, 139, 196, 222
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	112, 192
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	112, 192
ErhI	CCWWGG	2 cut(s)	112, 192
FaeI	CATG	2 cut(s)	88, 116
FaiI	YATR	3 cut(s)	86, 114, 185
FatI	CATG	2 cut(s)	84, 112
Fnu4HI	GCNGC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	118
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	111, 134
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	88, 116
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	67, 118, 149
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	55, 169
HpyCH4III	ACNGT	2 cut(s)	11, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	88, 116
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	49, 92, 139, 196, 222
LpnPI	CCDG	7 cut(s)	38, 52, 60, 115, 128, 142, 148
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	5 cut(s)	51, 94, 141, 198, 224
MboI	GATC	5 cut(s)	49, 92, 139, 196, 222
MboII	GAAGA	4 cut(s)	16, 34, 70, 221
MflI	RGATCY	2 cut(s)	196, 222
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	1 cut(s)	40
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	5 cut(s)	49, 92, 139, 196, 222
NlaIII	CATG	2 cut(s)	88, 116
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	196, 222
PsyI	GACNNNGTC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	5 cut(s)	49, 92, 139, 196, 222
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	3 cut(s)	57, 109, 131
SsiI	CCGC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	112, 192
TaaI	ACNGT	2 cut(s)	11, 217
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.