FvH4_1g09440

Suppressor of mec-8 and unc-52 protein homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5063504 .. 5067313
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09440.t2

Sequence Viewer

Length: 1656 bp
ATGAGAAACCTGAGCTACCGGAGTTGCCGAAATACCGAGACAGAGCTAAGGAGAGAAGAGATGAGAAGAACCCTGATTATGAGGCCAATCAGTTGGGTTCTTTTCATGCCGTTGCGCCGCCGGGGAATGTTGATCTCGGCTGATGTGCATAAGTTGTCGATCGAGAAGAGCAAGTATCTGGGAGGTGATCTGGAACACACACATTTGGTGAAAGGACTGGATTATGCTTTACTTACTAAAGTAAGAAGTGAGATGGATAAGAAGCCAGATGCTGGAGATGATGAGGGTGACGCAAAATCCAGAGCATCTAAGGAGGACCAAAAGGTGTCATTTCGAACAGCAACTGCAAAGTCGGTGTATCAATGGATAGTCAAGCCCCAGACTGTTATCAAAACCAATGAGATGTTCCTGCCTGGTAGATTGTCATTTATTTTTAACATGGAGGGTGGATACACTCATGACATCCCTATGACCTTGCATAGGAGTAAAGCCGACTGTCCACAGCCTGAGGAAATGGCAACCGTCAGTTTTGATGGTGCTGTGCTTGAAAAAATATCTGCAAGCATGTCATATCTTCGTGTTGGATCTTCTGGGAAGGCTGCCAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTACAGGAAAGATTTCTGTTGGTAATGGATATGCGGAAGAGGATAAGCCTTCAAAACCTGTTGTTGATGTTGCGAAGAATGAAACTAAAAGAGAGTTTTTACCCCCACCTCCGCCACTTCCCAGGAAAAGTCAGATAGATTCAAATGAAAAACAAGGCCCAACTATTGCACGAGCAGATGAGGATGACATTTTTGTAGGTGATGGTGTTGACTATGCTATTCCTGGTAAAGATTTGAGCCATAGTCCTCTTTCTGAGGACATGGAAGAATCTCCCAGGAACAAAGAAAAAGTTTCTTATTTTGATGAACCTGCTTATGGTCCTGTCCAACCCCAAGGGCTTCCGAATGAATGGCAAGAAATGAATGGATACGATGGGACCACACAACAACCAATGGTTGGCCCCTACTCAGGAGAGTGGCAGGAATACCACCAATATACTGAGCAAATGGCCTATCCTGAACAGTACCTCCAGCCAAATATGGAGGGTTATGATGTGCAAGAAGGCCCAACTATACAAGATCCACGCTTTATGACTCAAGAAGAGAAGGATAGGGGTTTAGGGTCTGTGTTTAAGCGGGATGACCAAAGACTTCAACAATTGAGGGAGAAAGATGCTCGAGAAAAGGATCCCAACTTTATCTCGGAGAGTTATTCTGAATGTTATCCGGGCTATCAAGAATATAACCGTGAGGTTGTTGACAGTGACGATGAGGATGACTTGTCAAAAATGGATATGGGTGGACGAGCCAAGGGTCGTCTTCATCGGTGGGACTTTGAGACAGAAGAAGAATGGGCAACATACAATGAACAGAAGGAAGCTATGCCTAAGGCGGCATTCCAGTTTGGCGTGAAGATGCAAGATGGTCGAAAGACAAGAAAGCAAAACAAGGACCAGAAGATCAGTAACGATCTGAACAGGATCAACAAGATACTTGCTAGAAAAAAGTCTGAAAAGGATGGAGATGATGGTGGTGGCCATTACGATGAAGATGTACAGCCTGGCAAGAAACTTCGAGTTTAG

Protein Analysis

552

Amino Acids

63.04

Weight (kDa)

5.74

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RED_N PF07808 5 - 223 5.2e-77 RED-like protein N-terminal region
RED_C PF07807 447 - 553 4.2e-43 RED-like protein C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 952
AccB7I CCANNNNNTGG 2 cut(s) 272, 1031
AciI CCGC 5 cut(s) 118, 668, 746, 1210, 1466
AclWI GGATC 5 cut(s) 592, 1148, 1256, 1269, 1562
AcoI YGGCCR 1 cut(s) 1609
AfaI GTAC 2 cut(s) 1100, 1629
AfiI CCNNNNNNNGG 5 cut(s) 272, 480, 950, 1031, 1043
AgsI TTSAA 4 cut(s) 548, 687, 777, 1229
AjnI CCWGG 5 cut(s) 412, 755, 856, 908, 1633
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AloI GAACNNNNNNTCC 2 cut(s) 1086, 1118
AluBI AGCT 3 cut(s) 15, 46, 1454
AluI AGCT 3 cut(s) 15, 46, 1454
Alw26I GTCTC 2 cut(s) 32, 1406
AlwI GGATC 5 cut(s) 592, 1148, 1256, 1269, 1562
AlwNI CAGNNNCTG 2 cut(s) 272, 344
Ama87I CYCGRG 1 cut(s) 1251
AoxI GGCC 6 cut(s) 83, 790, 1033, 1083, 1138, 1609
ApeKI GCWGC 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 646
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 7 cut(s) 316, 791, 953, 1011, 1034, 1139, 1525
AsuC2I CCSGG 2 cut(s) 122, 1302
AsuHPI GGTGA 4 cut(s) 197, 220, 299, 845
AsuII TTCGAA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 1251
AvaII GGWCC 4 cut(s) 316, 953, 1011, 1525
AxyI CCTNAGG 2 cut(s) 507, 1461
BalI TGGCCA 1 cut(s) 1611
BamHI GGATCC 1 cut(s) 1261
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 1385
BbvI GCAGC 1 cut(s) 586
BccI CCATC 7 cut(s) 247, 527, 830, 1001, 1490, 1586, 1595
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 1481, 1515
BciT130I CCWGG 5 cut(s) 414, 757, 858, 910, 1635
BciVI GTATCC 2 cut(s) 443, 995
BcnI CCSGG 2 cut(s) 122, 1302
BcoDI GTCTC 2 cut(s) 32, 1406
BfaI CTAG 1 cut(s) 1572
BfuAI ACCTGC 1 cut(s) 952
BfuI GTATCC 2 cut(s) 443, 995
BisI GCNGC 3 cut(s) 118, 600, 1467
BlsI GCNGC 3 cut(s) 119, 601, 1468
Bme1390I CCNGG 7 cut(s) 122, 414, 757, 858, 910, 1302, 1635
Bme18I GGWCC 4 cut(s) 316, 953, 1011, 1525
BmeT110I CYCGRG 1 cut(s) 1251
BmgT120I GGNCC 7 cut(s) 316, 791, 953, 1011, 1034, 1139, 1525
BmiI GGNNCC 3 cut(s) 1012, 1036, 1263
BmrFI CCNGG 7 cut(s) 122, 414, 757, 858, 910, 1302, 1635
BmsI GCATC 5 cut(s) 259, 314, 616, 1237, 1479
BpiI GAAGAC 1 cut(s) 1385
BpmI CTGGAG 2 cut(s) 294, 1088
Bpu10I CCTNAGC 2 cut(s) 11, 47
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 1155
BpuMI CCSGG 2 cut(s) 122, 1302
BsaJI CCNNGG 5 cut(s) 121, 755, 908, 967, 1383
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 480, 950, 1031, 1043
Bse1I ACTGG 2 cut(s) 222, 1474
Bse21I CCTNAGG 2 cut(s) 507, 1461
BseBI CCWGG 5 cut(s) 414, 757, 858, 910, 1635
BseDI CCNNGG 5 cut(s) 121, 755, 908, 967, 1383
BseGI GGATG 5 cut(s) 462, 823, 1219, 1354, 1597
BseLI CCNNNNNNNGG 5 cut(s) 272, 480, 950, 1031, 1043
BseMII CTCAG 4 cut(s) 498, 879, 1056, 1065
BseNI ACTGG 2 cut(s) 222, 1474
BseXI GCAGC 1 cut(s) 586
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 6 cut(s) 85, 792, 1035, 1085, 1140, 1611
BsiEI CGRYCG 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 1251
BsiSI CCGG 3 cut(s) 19, 121, 1301
BslFI GGGAC 2 cut(s) 1024, 1418
BslI CCNNNNNNNGG 5 cut(s) 272, 480, 950, 1031, 1043
BsmAI GTCTC 2 cut(s) 32, 1406
BsmFI GGGAC 2 cut(s) 1024, 1418
BsmI GAATGC 1 cut(s) 1469
BsnI GGCC 6 cut(s) 85, 792, 1035, 1085, 1140, 1611
BsoBI CYCGRG 1 cut(s) 1251
Bsp119I TTCGAA 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 1627
Bsp143I GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
BspACI CCGC 5 cut(s) 118, 668, 746, 1210, 1466
BspANI GGCC 6 cut(s) 85, 792, 1035, 1085, 1140, 1611
BspCNI CTCAG 4 cut(s) 499, 880, 1055, 1066
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 1012, 1036, 1263
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 5 cut(s) 592, 1148, 1256, 1269, 1562
BspQI GCTCTTC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 1627
BsrI ACTGG 2 cut(s) 222, 1474
BssECI CCNNGG 5 cut(s) 121, 755, 908, 967, 1383
BssMI GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 967, 1383
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 5 cut(s) 414, 757, 858, 910, 1635
Bst4CI ACNGT 6 cut(s) 385, 497, 523, 1098, 1322, 1337
Bst6I CTCTTC 4 cut(s) 51, 161, 666, 1170
BstAUI TGTACA 1 cut(s) 1627
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 8 cut(s) 11, 47, 309, 507, 888, 1042, 1074, 1461
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 5 cut(s) 462, 823, 1219, 1354, 1597
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 9 cut(s) 135, 162, 190, 587, 1156, 1264, 1536, 1546, 1557
BstMAI GTCTC 2 cut(s) 32, 1406
BstMBI GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
BstMCI CGRYCG 1 cut(s) 162
BstNI CCWGG 5 cut(s) 414, 757, 858, 910, 1635
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 7 cut(s) 120, 412, 755, 856, 908, 1300, 1633
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 1385
BstX2I RGATCY 3 cut(s) 584, 1153, 1261
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 3 cut(s) 584, 1153, 1261
Bsu36I CCTNAGG 2 cut(s) 507, 1461
BsuI GTATCC 2 cut(s) 443, 995
BsuRI GGCC 6 cut(s) 85, 792, 1035, 1085, 1140, 1611
BtsCI GGATG 5 cut(s) 462, 823, 1219, 1354, 1597
BtsIMutI CAGTG 1 cut(s) 1342
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 1 cut(s) 562
CaiI CAGNNNCTG 2 cut(s) 272, 344
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 7 cut(s) 316, 791, 953, 1011, 1034, 1139, 1525
CseI GACGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 1099, 1628
CviAII CATG 5 cut(s) 106, 439, 458, 565, 895
CviQI GTAC 2 cut(s) 1099, 1628
DdeI CTNAG 8 cut(s) 11, 47, 309, 507, 888, 1042, 1074, 1461
DpnI GATC 9 cut(s) 134, 161, 189, 586, 1155, 1263, 1535, 1545, 1556
DpnII GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
EaeI YGGCCR 1 cut(s) 1609
Eam1104I CTCTTC 4 cut(s) 51, 161, 666, 1170
EarI CTCTTC 4 cut(s) 51, 161, 666, 1170
EciI GGCGGA 1 cut(s) 735
Eco130I CCWWGG 2 cut(s) 967, 1383
Eco47I GGWCC 4 cut(s) 316, 953, 1011, 1525
Eco81I CCTNAGG 2 cut(s) 507, 1461
Eco88I CYCGRG 1 cut(s) 1251
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoRII CCWGG 5 cut(s) 412, 755, 856, 908, 1633
EcoT14I CCWWGG 2 cut(s) 967, 1383
ErhI CCWWGG 2 cut(s) 967, 1383
FaeI CATG 5 cut(s) 109, 442, 461, 568, 898
FaqI GGGAC 2 cut(s) 1024, 1418
FatI CATG 5 cut(s) 105, 438, 457, 564, 894
FauI CCCGC 1 cut(s) 1203
Fnu4HI GCNGC 3 cut(s) 118, 600, 1467
FokI GGATG 5 cut(s) 449, 830, 1226, 1361, 1604
Fsp4HI GCNGC 3 cut(s) 118, 600, 1467
FspBI CTAG 1 cut(s) 1572
GlaI GCGC 1 cut(s) 116
GluI GCNGC 3 cut(s) 118, 600, 1467
GsuI CTGGAG 2 cut(s) 294, 1088
HaeIII GGCC 6 cut(s) 85, 792, 1035, 1085, 1140, 1611
HapII CCGG 3 cut(s) 19, 121, 1301
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 117
Hin1II CATG 5 cut(s) 109, 442, 461, 568, 898
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 2 cut(s) 844, 1333
HindII GTYRAC 2 cut(s) 844, 1333
HinfI GANTC 3 cut(s) 773, 902, 1168
HpaII CCGG 3 cut(s) 19, 121, 1301
HphI GGTGA 4 cut(s) 197, 220, 299, 845
Hpy166II GTNNAC 4 cut(s) 500, 844, 1333, 1376
Hpy188I TCNGA 7 cut(s) 768, 889, 978, 1279, 1291, 1548, 1585
Hpy188III TCNNGA 9 cut(s) 163, 191, 300, 458, 1044, 1091, 1172, 1253, 1310
Hpy8I GTNNAC 4 cut(s) 500, 844, 1333, 1376
HpyAV CCTTC 6 cut(s) 589, 610, 693, 1130, 1174, 1441
HpyCH4III ACNGT 6 cut(s) 385, 497, 523, 1098, 1322, 1337
HpyCH4V TGCA 8 cut(s) 148, 347, 478, 560, 629, 803, 1132, 1492
HpyF3I CTNAG 8 cut(s) 11, 47, 309, 507, 888, 1042, 1074, 1461
Hsp92II CATG 5 cut(s) 109, 442, 461, 568, 898
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
LguI GCTCTTC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 5 cut(s) 259, 314, 616, 1237, 1479
MaeI CTAG 1 cut(s) 1572
MaeIII GTNAC 4 cut(s) 287, 634, 1337, 1538
MalI GATC 9 cut(s) 134, 161, 189, 586, 1155, 1263, 1535, 1545, 1556
MboI GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
MfeI CAATTG 1 cut(s) 1232
MflI RGATCY 3 cut(s) 584, 1153, 1261
MlsI TGGCCA 1 cut(s) 1611
MluCI AATT 1 cut(s) 1232
MluNI TGGCCA 1 cut(s) 1611
MlyI GAGTC 1 cut(s) 1162
MmeI TCCRAC 2 cut(s) 562, 985
Mox20I TGGCCA 1 cut(s) 1611
MroXI GAANNNNTTC 1 cut(s) 646
MscI TGGCCA 1 cut(s) 1611
MseI TTAA 2 cut(s) 435, 1206
MslI CAYNNNNRTG 2 cut(s) 467, 1617
Msp20I TGGCCA 1 cut(s) 1611
MspI CCGG 3 cut(s) 19, 121, 1301
MspR9I CCNGG 7 cut(s) 122, 414, 757, 858, 910, 1302, 1635
MunI CAATTG 1 cut(s) 1232
Mva1269I GAATGC 1 cut(s) 1469
MvaI CCWGG 5 cut(s) 414, 757, 858, 910, 1635
NciI CCSGG 2 cut(s) 122, 1302
NdeII GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
NlaIII CATG 5 cut(s) 109, 442, 461, 568, 898
NlaIV GGNNCC 3 cut(s) 1012, 1036, 1263
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 287, 1337
NspI RCATGY 1 cut(s) 568
NspV TTCGAA 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 1251
PagI TCATGA 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 161
PctI GAATGC 1 cut(s) 1469
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 2 cut(s) 773, 902
PflMI CCANNNNNTGG 2 cut(s) 272, 1031
PkrI GCNGC 3 cut(s) 119, 601, 1468
Ple19I CGATCG 1 cut(s) 162
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
Psp6I CCWGG 5 cut(s) 412, 755, 856, 908, 1633
PspGI CCWGG 5 cut(s) 412, 755, 856, 908, 1633
PspN4I GGNNCC 3 cut(s) 1012, 1036, 1263
PspPI GGNCC 7 cut(s) 316, 791, 953, 1011, 1034, 1139, 1525
PstNI CAGNNNCTG 2 cut(s) 272, 344
PsuI RGATCY 3 cut(s) 584, 1153, 1261
PvuI CGATCG 1 cut(s) 162
RsaI GTAC 2 cut(s) 1100, 1629
RsaNI GTAC 2 cut(s) 1099, 1628
RseI CAYNNNNRTG 2 cut(s) 467, 1617
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 435, 1206
SatI GCNGC 3 cut(s) 118, 600, 1467
Sau3AI GATC 9 cut(s) 132, 159, 187, 584, 1153, 1261, 1533, 1543, 1554
Sau96I GGNCC 7 cut(s) 316, 791, 953, 1011, 1034, 1139, 1525
SchI GAGTC 1 cut(s) 1162
ScrFI CCNGG 7 cut(s) 122, 414, 757, 858, 910, 1302, 1635
SfaNI GCATC 5 cut(s) 259, 314, 616, 1237, 1479
Sfr274I CTCGAG 1 cut(s) 1251
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 4 cut(s) 316, 953, 1011, 1525
SlaI CTCGAG 1 cut(s) 1251
SmiMI CAYNNNNRTG 2 cut(s) 467, 1617
SmlI CTYRAG 2 cut(s) 1170, 1251
SmoI CTYRAG 2 cut(s) 1170, 1251
Sse9I AATT 1 cut(s) 1232
SsiI CCGC 5 cut(s) 118, 668, 746, 1210, 1466
SspMI CTAG 1 cut(s) 1572
StyD4I CCNGG 7 cut(s) 120, 412, 755, 856, 908, 1300, 1633
StyI CCWWGG 2 cut(s) 967, 1383
TaaI ACNGT 6 cut(s) 385, 497, 523, 1098, 1322, 1337
TaqI TCGA 6 cut(s) 158, 162, 334, 1252, 1501, 1648
TasI AATT 1 cut(s) 1232
TatI WGTACW 1 cut(s) 1627
TauI GCSGC 2 cut(s) 120, 1469
TfiI GAWTC 2 cut(s) 773, 902
Tru1I TTAA 2 cut(s) 435, 1206
Tru9I TTAA 2 cut(s) 435, 1206
TscAI CASTG 1 cut(s) 1342
TseFI GTSAC 2 cut(s) 287, 1337
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 2 cut(s) 287, 1337
TspDTI ATGAA 9 cut(s) 94, 729, 795, 954, 996, 1010, 1385, 1455, 1635
TspRI CASTG 1 cut(s) 1342
Van91I CCANNNNNTGG 2 cut(s) 272, 1031
VpaK11BI GGWCC 4 cut(s) 316, 953, 1011, 1525
XagI CCTNNNNNAGG 1 cut(s) 478
XceI RCATGY 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 1 cut(s) 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.