pycom02g08040

Suppressor of mec-8 and unc-52 protein homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
5668519 .. 5672224
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08040.2

Sequence Viewer

Length: 1731 bp
ATGGCACCGACGACATCGTCGAAGAAAAATTACAAGGAGAAAGTTACTCGCCGCAAGGAGGAGAAAGCGGCGGAGCAACCGGATTTGCCGAAATACAGAGACAGAGCTAAGGAGCGAAGAGAAGATCAAAATCCCGATTATGAGCCGACTGAATTGGGTTCTTTCCATGCCGTTGCGCCTCCCGGGAACATTGATCTCCGGGCAGCTGAGGTGCAGAAGTTATCCATTGAGAAGAGCAAGTATCTTGGAGGTGATGTGGAACACACACATTTGGTCAAAGGATTGGATTACGCTTTACTTAACAAAGTAAGAAGTGAGATTGACAAAAAGCCAGATGATGGAGATGATGTTGATGCAAAATCTAGAGCATCTAAGGAAGACCAAAAGTTGTCGTTTCGCACCGCTACCGCAAAGTCAGTTTACCAATGGATAGTCAAACCCCACGCCGTTATCAAAACCAATGAGATGTTCCTTCCTGGTAGAATGTCATTTATTTTTAACATGGAGGGCGGATACAGTCATGACATCCCAACCACCTTGCATAGGAGTAAAGCAGACTGTCCACAGACAGAGGAAGCGGTAACTGTCAATGTTGATGGTTCTGTACTTGACCGAATTGCTAAAATCATGTCATATCTTCGTCTTGATCGATCTTCTGGGAAGGTTCTCAAGAAGAAAAAGAAGGAAAAAGATGCAAGAGGAAAGATTTCAGTTGGTAATGAGTATGATGGAGAGGATAAGCCCTTGAAGCCTGATGTTGGGATTTTGAAGAATGAAACTAAAAAAGAGATTTTGCCACCACCACCTCCACCCCCTCCCAGGAAAAATCACATAGATTCAAAAGCACCACAAGGCCCAACTGTTGCCAGAGTAGATGAGGATGACATTTTTGTTGGGGATGGCGTTGAATATGTTGTTCCTGGTAAAGACTTGAGTCTAAGCCCTCTTTCCGAAGACATGGAAGAGTCTCCTCGGAACAAGGAAAGAGTTTCTTTTTTTGATGAACCTGCTTATGGTCCCGTACAACCCATCCAACCCTATGGGGTGCCTCAAGAATGGCAAGATATGAATGGATACGATGTGGCACAAACACAGCCAATGGCTGATGCCTACCAGGGGGAGTGGCCAGAATACCAATATGCAGAGCAAATGTCTTATCCTGAACAATACCTCCAGCCAAATATGGAAGGTTACGATGCGCAAACAGGCTTAAACATGCAGGATCCACGCTTTATGACTCAAGAGCAGAAGGATCGGGGTTTAGGATCCGTGTTTAAGCGGGATGACCAAAGACTTCAACAATTAAGGGAGAAAGATGCCCGAGAAAAGGATCCCAACTTCATCTCGGAGAGTTATTCTGAATGTTACCCTGGCTACCAAGAATATAATCGTGAGGTTGTTGACAGTGACGATGAAGATGACTTGTCAAAAATGGATATGGGTGGACGAGCTAAGGGTCGTCTTCACCGGTGGGACTTCGAGACAGAAGAAGAATGGGCAACATACAATGAGCAAAAGGAAGCTATGCCCAAGGCAGCTTTCCAGTTTGGTGTGAAGATGCAAGATGGTCGTAAGACACGAAAGCAAAACAAGGACCAGAAGATCACTAATGACCTCCAGAAGATCAACAAGATACTTGCTAGAAAGAAGATGGAAAAGGATATGGATGGTGGTGAGGGTGGCGGCCATTATGACGATGATGAACAGCCTGGCAAGAAGATTCGAGTTTGA

Protein Analysis

577

Amino Acids

65.88

Weight (kDa)

5.44

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc16I TGCGCA 1 cut(s) 1200
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 2 cut(s) 4, 1045
AccB7I CCANNNNNTGG 1 cut(s) 338
AciI CCGC 9 cut(s) 52, 68, 71, 402, 408, 510, 578, 1279, 1683
AclWI GGATC 7 cut(s) 1217, 1230, 1260, 1260, 1273, 1325, 1338
AcoI YGGCCR 2 cut(s) 1124, 1684
AfaI GTAC 2 cut(s) 606, 1023
AfiI CCNNNNNNNGG 8 cut(s) 58, 338, 543, 758, 819, 1013, 1116, 1327
AgeI ACCGGT 1 cut(s) 1467
AgsI TTSAA 5 cut(s) 748, 769, 840, 908, 1298
AjnI CCWGG 6 cut(s) 475, 818, 919, 1113, 1369, 1708
AjuI GAANNNNNNNTTGG 4 cut(s) 452, 484, 1523, 1555
AloI GAACNNNNNNTCC 2 cut(s) 1155, 1187
AluBI AGCT 5 cut(s) 107, 206, 1451, 1523, 1538
AluI AGCT 5 cut(s) 107, 206, 1451, 1523, 1538
Alw26I GTCTC 3 cut(s) 93, 972, 1475
AlwI GGATC 7 cut(s) 1217, 1230, 1260, 1260, 1273, 1325, 1338
Ama87I CYCGRG 2 cut(s) 182, 1320
AoxI GGCC 3 cut(s) 853, 1124, 1684
ApeKI GCWGC 2 cut(s) 203, 1535
AsiGI ACCGGT 1 cut(s) 1467
Asp700I GAANNNNTTC 1 cut(s) 706
AspLEI GCGC 2 cut(s) 178, 1201
AspS9I GGNCC 3 cut(s) 854, 1016, 1594
AsuC2I CCSGG 3 cut(s) 183, 184, 200
AsuHPI GGTGA 3 cut(s) 263, 1457, 1685
AvaI CYCGRG 2 cut(s) 182, 1320
AvaII GGWCC 2 cut(s) 1016, 1594
BalI TGGCCA 1 cut(s) 1126
BamHI GGATCC 3 cut(s) 1222, 1265, 1330
BanI GGYRCC 2 cut(s) 4, 1045
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 3 cut(s) 384, 960, 1454
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 215, 1547
BccI CCATC 8 cut(s) 332, 590, 722, 893, 1037, 1559, 1645, 1661
BceAI ACGGC 2 cut(s) 155, 431
BcgI CGANNNNNNTGC 4 cut(s) 1235, 1269, 1550, 1584
BciT130I CCWGG 6 cut(s) 477, 820, 921, 1115, 1371, 1710
BciVI GTATCC 2 cut(s) 506, 1067
BcnI CCSGG 3 cut(s) 183, 184, 200
BcoDI GTCTC 3 cut(s) 93, 972, 1475
BfaI CTAG 2 cut(s) 363, 1641
BfuAI ACCTGC 1 cut(s) 1015
BfuI GTATCC 2 cut(s) 506, 1067
BisI GCNGC 5 cut(s) 52, 69, 204, 1536, 1684
BlsI GCNGC 5 cut(s) 53, 70, 205, 1537, 1685
Bme1390I CCNGG 9 cut(s) 183, 184, 200, 477, 820, 921, 1115, 1371, 1710
Bme18I GGWCC 2 cut(s) 1016, 1594
BmeT110I CYCGRG 2 cut(s) 182, 1320
BmgT120I GGNCC 3 cut(s) 854, 1016, 1594
BmiI GGNNCC 6 cut(s) 6, 1018, 1047, 1224, 1267, 1332
BmrFI CCNGG 9 cut(s) 183, 184, 200, 477, 820, 921, 1115, 1371, 1710
BmsI GCATC 7 cut(s) 343, 377, 682, 1096, 1186, 1306, 1548
BoxI GACNNNNGTC 1 cut(s) 933
BpiI GAAGAC 3 cut(s) 384, 960, 1454
BpmI CTGGAG 2 cut(s) 1157, 1601
Bpu10I CCTNAGC 3 cut(s) 108, 207, 1452
BpuEI CTTGAG 4 cut(s) 653, 952, 1035, 1224
BpuMI CCSGG 3 cut(s) 183, 184, 200
Bsa29I ATCGAT 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 6 cut(s) 182, 818, 971, 1114, 1369, 1530
BsaWI WCCGGW 2 cut(s) 79, 1467
BsaXI ACNNNNNCTCC 6 cut(s) 240, 270, 333, 363, 1155, 1185
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 338, 543, 758, 819, 1013, 1116, 1327
Bse118I RCCGGY 1 cut(s) 1467
Bse1I ACTGG 1 cut(s) 1543
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 6 cut(s) 477, 820, 921, 1115, 1371, 1710
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 6 cut(s) 182, 818, 971, 1114, 1369, 1530
BseGI GGATG 6 cut(s) 525, 886, 904, 1029, 1288, 1672
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 8 cut(s) 58, 338, 543, 758, 819, 1013, 1116, 1327
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 1543
BseRI GAGGAG 2 cut(s) 74, 960
BseXI GCAGC 2 cut(s) 215, 1547
BsgI GTGCAG 1 cut(s) 233
BshFI GGCC 3 cut(s) 855, 1126, 1686
BshNI GGYRCC 2 cut(s) 4, 1045
BshTI ACCGGT 1 cut(s) 1467
BshVI ATCGAT 1 cut(s) 649
BsiHKCI CYCGRG 2 cut(s) 182, 1320
BsiSI CCGG 4 cut(s) 80, 183, 199, 1468
BslFI GGGAC 2 cut(s) 1002, 1487
BslI CCNNNNNNNGG 8 cut(s) 58, 338, 543, 758, 819, 1013, 1116, 1327
BsmAI GTCTC 3 cut(s) 93, 972, 1475
BsmFI GGGAC 2 cut(s) 1002, 1487
BsnI GGCC 3 cut(s) 855, 1126, 1686
BsoBI CYCGRG 2 cut(s) 182, 1320
BspACI CCGC 9 cut(s) 52, 68, 71, 402, 408, 510, 578, 1279, 1683
BspANI GGCC 3 cut(s) 855, 1126, 1686
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 649
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 6 cut(s) 6, 1018, 1047, 1224, 1267, 1332
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 7 cut(s) 1217, 1230, 1260, 1260, 1273, 1325, 1338
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 2 cut(s) 4, 1045
BsrFI RCCGGY 1 cut(s) 1467
BsrI ACTGG 1 cut(s) 1543
BssAI RCCGGY 1 cut(s) 1467
BssECI CCNNGG 6 cut(s) 182, 818, 971, 1114, 1369, 1530
BssT1I CCWWGG 1 cut(s) 1530
Bst2UI CCWGG 6 cut(s) 477, 820, 921, 1115, 1371, 1710
Bst4CI ACNGT 5 cut(s) 518, 560, 586, 862, 1406
Bst6I CTCTTC 3 cut(s) 112, 227, 957
BstDEI CTNAG 5 cut(s) 108, 207, 372, 938, 1452
BstENI CCTNNNNNAGG 1 cut(s) 541
BstF5I GGATG 6 cut(s) 525, 886, 904, 1029, 1288, 1672
BstHHI GCGC 2 cut(s) 178, 1201
BstMAI GTCTC 3 cut(s) 93, 972, 1475
BstMWI GCNNNNNNNGC 1 cut(s) 748
BstNI CCWGG 6 cut(s) 477, 820, 921, 1115, 1371, 1710
BstNSI RCATGY 1 cut(s) 1219
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 9 cut(s) 181, 182, 198, 475, 818, 919, 1113, 1369, 1708
BstV1I GCAGC 2 cut(s) 215, 1547
BstV2I GAAGAC 3 cut(s) 384, 960, 1454
BstX2I RGATCY 3 cut(s) 1222, 1265, 1330
BstXI CCANNNNNNTGG 1 cut(s) 1040
BstYI RGATCY 3 cut(s) 1222, 1265, 1330
Bsu15I ATCGAT 1 cut(s) 649
BsuI GTATCC 2 cut(s) 506, 1067
BsuRI GGCC 3 cut(s) 855, 1126, 1686
BsuTUI ATCGAT 1 cut(s) 649
BtsCI GGATG 6 cut(s) 525, 886, 904, 1029, 1288, 1672
BtsIMutI CAGTG 1 cut(s) 1411
BveI ACCTGC 1 cut(s) 1015
CciI TCATGA 1 cut(s) 520
CfoI GCGC 2 cut(s) 178, 1201
Cfr10I RCCGGY 1 cut(s) 1467
Cfr13I GGNCC 3 cut(s) 854, 1016, 1594
Cfr9I CCCGGG 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 649
Csp6I GTAC 2 cut(s) 605, 1022
CspAI ACCGGT 1 cut(s) 1467
CviAII CATG 6 cut(s) 167, 502, 521, 628, 958, 1216
CviQI GTAC 2 cut(s) 605, 1022
DdeI CTNAG 5 cut(s) 108, 207, 372, 938, 1452
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 1124, 1684
Eam1104I CTCTTC 3 cut(s) 112, 227, 957
EarI CTCTTC 3 cut(s) 112, 227, 957
EciI GGCGGA 2 cut(s) 86, 525
Eco130I CCWWGG 1 cut(s) 1530
Eco47I GGWCC 2 cut(s) 1016, 1594
Eco88I CYCGRG 2 cut(s) 182, 1320
EcoNI CCTNNNNNAGG 1 cut(s) 541
EcoRII CCWGG 6 cut(s) 475, 818, 919, 1113, 1369, 1708
EcoT14I CCWWGG 1 cut(s) 1530
ErhI CCWWGG 1 cut(s) 1530
FaeI CATG 6 cut(s) 170, 505, 524, 631, 961, 1219
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 2 cut(s) 1002, 1487
FatI CATG 6 cut(s) 166, 501, 520, 627, 957, 1215
FauI CCCGC 1 cut(s) 1272
Fnu4HI GCNGC 5 cut(s) 52, 69, 204, 1536, 1684
FokI GGATG 6 cut(s) 512, 893, 911, 1016, 1295, 1679
Fsp4HI GCNGC 5 cut(s) 52, 69, 204, 1536, 1684
FspBI CTAG 2 cut(s) 363, 1641
FspI TGCGCA 1 cut(s) 1200
GlaI GCGC 2 cut(s) 177, 1200
GluI GCNGC 5 cut(s) 52, 69, 204, 1536, 1684
GsuI CTGGAG 2 cut(s) 1157, 1601
HaeIII GGCC 3 cut(s) 855, 1126, 1686
HapII CCGG 4 cut(s) 80, 183, 199, 1468
HhaI GCGC 2 cut(s) 178, 1201
Hin1II CATG 6 cut(s) 170, 505, 524, 631, 961, 1219
Hin6I GCGC 2 cut(s) 176, 1199
HinP1I GCGC 2 cut(s) 176, 1199
HincII GTYRAC 1 cut(s) 1402
HindII GTYRAC 1 cut(s) 1402
HinfI GANTC 5 cut(s) 836, 934, 965, 1237, 1720
HpaII CCGG 4 cut(s) 80, 183, 199, 1468
HphI GGTGA 3 cut(s) 263, 1457, 1685
Hpy166II GTNNAC 4 cut(s) 421, 563, 1402, 1445
Hpy188I TCNGA 4 cut(s) 952, 975, 1348, 1360
Hpy8I GTNNAC 4 cut(s) 421, 563, 1402, 1445
Hpy99I CGWCG 2 cut(s) 13, 22
HpyAV CCTTC 5 cut(s) 482, 655, 676, 1181, 1243
HpyCH4III ACNGT 5 cut(s) 518, 560, 586, 862, 1406
HpyCH4V TGCA 7 cut(s) 214, 356, 541, 695, 1142, 1219, 1561
HpyF10VI GCNNNNNNNGC 1 cut(s) 748
HpyF3I CTNAG 5 cut(s) 108, 207, 372, 938, 1452
Hsp92II CATG 6 cut(s) 170, 505, 524, 631, 961, 1219
HspAI GCGC 2 cut(s) 176, 1199
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 73, 112
Lsp1109I GCAGC 2 cut(s) 215, 1547
LweI GCATC 7 cut(s) 343, 377, 682, 1096, 1186, 1306, 1548
MaeI CTAG 2 cut(s) 363, 1641
MaeIII GTNAC 5 cut(s) 43, 580, 1190, 1364, 1406
MflI RGATCY 3 cut(s) 1222, 1265, 1330
MlsI TGGCCA 1 cut(s) 1126
MluCI AATT 4 cut(s) 28, 152, 615, 1301
MluNI TGGCCA 1 cut(s) 1126
MlyI GAGTC 3 cut(s) 943, 974, 1231
MmeI TCCRAC 1 cut(s) 1057
Mox20I TGGCCA 1 cut(s) 1126
MroXI GAANNNNTTC 1 cut(s) 706
MscI TGGCCA 1 cut(s) 1126
MseI TTAA 5 cut(s) 300, 498, 1211, 1275, 1304
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 4 cut(s) 80, 183, 199, 1468
MspR9I CCNGG 9 cut(s) 183, 184, 200, 477, 820, 921, 1115, 1371, 1710
MvaI CCWGG 6 cut(s) 477, 820, 921, 1115, 1371, 1710
MwoI GCNNNNNNNGC 1 cut(s) 748
NciI CCSGG 3 cut(s) 183, 184, 200
NlaIII CATG 6 cut(s) 170, 505, 524, 631, 961, 1219
NlaIV GGNNCC 6 cut(s) 6, 1018, 1047, 1224, 1267, 1332
NmuCI GTSAC 1 cut(s) 1406
NsbI TGCGCA 1 cut(s) 1200
NspI RCATGY 1 cut(s) 1219
PagI TCATGA 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 646, 1576
PdmI GAANNNNTTC 1 cut(s) 706
PfeI GAWTC 2 cut(s) 836, 1720
PflFI GACNNNGTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 1467
PkrI GCNGC 5 cut(s) 53, 70, 205, 1537, 1685
PleI GAGTC 3 cut(s) 942, 973, 1231
PpsI GAGTC 3 cut(s) 942, 973, 1231
PshAI GACNNNNGTC 1 cut(s) 933
Psp6I CCWGG 6 cut(s) 475, 818, 919, 1113, 1369, 1708
PspGI CCWGG 6 cut(s) 475, 818, 919, 1113, 1369, 1708
PspN4I GGNNCC 6 cut(s) 6, 1018, 1047, 1224, 1267, 1332
PspPI GGNCC 3 cut(s) 854, 1016, 1594
PsuI RGATCY 3 cut(s) 1222, 1265, 1330
PsyI GACNNNGTC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 606, 1023
RsaNI GTAC 2 cut(s) 605, 1022
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 5 cut(s) 300, 498, 1211, 1275, 1304
SatI GCNGC 5 cut(s) 52, 69, 204, 1536, 1684
Sau96I GGNCC 3 cut(s) 854, 1016, 1594
SchI GAGTC 3 cut(s) 943, 974, 1231
ScrFI CCNGG 9 cut(s) 183, 184, 200, 477, 820, 921, 1115, 1371, 1710
SfaNI GCATC 7 cut(s) 343, 377, 682, 1096, 1186, 1306, 1548
SgrAI CRCCGGYG 1 cut(s) 1467
SinI GGWCC 2 cut(s) 1016, 1594
SmaI CCCGGG 1 cut(s) 184
SmlI CTYRAG 4 cut(s) 668, 931, 1050, 1239
SmoI CTYRAG 4 cut(s) 668, 931, 1050, 1239
Sse9I AATT 4 cut(s) 28, 152, 615, 1301
SsiI CCGC 9 cut(s) 52, 68, 71, 402, 408, 510, 578, 1279, 1683
SspMI CTAG 2 cut(s) 363, 1641
StyD4I CCNGG 9 cut(s) 181, 182, 198, 475, 818, 919, 1113, 1369, 1708
StyI CCWWGG 1 cut(s) 1530
TaaI ACNGT 5 cut(s) 518, 560, 586, 862, 1406
TaqI TCGA 4 cut(s) 20, 649, 1479, 1723
TaqII GACCGA 1 cut(s) 627
TasI AATT 4 cut(s) 28, 152, 615, 1301
TatI WGTACW 1 cut(s) 604
TauI GCSGC 3 cut(s) 54, 71, 1686
TfiI GAWTC 2 cut(s) 836, 1720
Tru1I TTAA 5 cut(s) 300, 498, 1211, 1275, 1304
Tru9I TTAA 5 cut(s) 300, 498, 1211, 1275, 1304
TscAI CASTG 1 cut(s) 1411
TseFI GTSAC 1 cut(s) 1406
TseI GCWGC 2 cut(s) 203, 1535
Tsp45I GTSAC 1 cut(s) 1406
TspDTI ATGAA 6 cut(s) 789, 1017, 1082, 1330, 1428, 1716
TspGWI ACGGA 1 cut(s) 1258
TspMI CCCGGG 1 cut(s) 182
TspRI CASTG 1 cut(s) 1411
Tth111I GACNNNGTC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 1016, 1594
XagI CCTNNNNNAGG 1 cut(s) 541
XbaI TCTAGA 1 cut(s) 362
XceI RCATGY 1 cut(s) 1219
XmaI CCCGGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 706
XspI CTAG 2 cut(s) 363, 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.