AT2G28000
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
11926446 .. 11929488
3043 bp
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UTR
Exon/CDS
Intron
AT2G28000.1

Sequence Viewer

Length: 1761 bp
ATGGCGTCTGCAAACGCTCTCTCTTCCGCCTCCGTCCTCTGTTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGGTCAGAGAGTTAGCTACAACAAGAGGACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAAGGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGCTGATTGTGTTGGTCTCACTCTTGGCCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGGAAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAATGCCATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCTGCTGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTTGAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGAATTGATAAGACTGTTCAAGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAAGGTCGTGATGACATCAGAGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGCCATCGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCATCTTCTTTTGAGACCACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGTTACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTATTGATCACTGATCAGAAGATCACTGCGATCAAAGACATCATCCCTATTTTGGAGAAGACCACTCAGCTTCGTGCTCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAACAAGCTTCGTGGTGTCCTCAATGTTGTTGCCGTTAAAGCGCCAGGATTTGGAGAAAGAAGAAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACATGAGCTTACTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGATTAGCAAAGATTCGACTACCCTCATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCGGATTGCTCAGCTGAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCAGAGAAGCTCGCTGAGAGAATTGCGAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAACTGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAGAACGCAACATTTGCTGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGTTATTCCCGCCATTAAGGAGACTTTTGAGGATGCTGATGAACGTTTGGGAGCTGACATAGTACAAAAGGCATTGCTGTCACCAGCTGCTCTTATTGCTCAGAACGCTGGAGTTGAAGGAGAAGTTGTTGTGGAAAAGATTATGTTCAGCGATTGGGAGAATGGGTACAACGCAATGACTGATACATATGAGAATCTGTTCGAAGCTGGAGTGATTGATCCGGCTAAAGTGACAAGATGTGCGCTACAGAACGCTGCTTCCGTAGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTTGACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCTCCTGAGGGTCTCATGGTGTAA

Protein Analysis

586

Amino Acids

62.07

Weight (kDa)

5.08

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 68 - 571 1.7e-75 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28000
fragaria_vesca FvH4_3g31450
malus_domestica MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica Prupe.6G106800_v2.0.a1
pyrus_communis pycom11g11710
rosa_chinensis RchiOBHm_Chr5g0058151
rosa_laevigata RLG00000035195
rosa_multiflora Rmu_sc0000367.1_g000017
rosa_roxburghii Rroxscaffold_1G00022440
rosa_rugosa Rorug05G0311700
rosa_samantha Rh5AG380000 Rh5CG414900
rosa_wichuraiana Rw5G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 974, 1376
AciI CCGC 2 cut(s) 27, 1413
AclI AACGTT 1 cut(s) 1447
AclWI GGATC 1 cut(s) 1616
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 509, 1199
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 1031, 1467, 1571, 1680
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 6 cut(s) 421, 548, 841, 974, 1039, 1376
AgsI TTSAA 6 cut(s) 506, 665, 701, 1001, 1061, 1520
AjnI CCWGG 2 cut(s) 967, 1369
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 2 cut(s) 1646, 1678
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 5 cut(s) 224, 677, 1190, 1418, 1754
AlwI GGATC 1 cut(s) 1616
AlwNI CAGNNNCTG 2 cut(s) 1025, 1286
Ama87I CYCGRG 1 cut(s) 420
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 3 cut(s) 229, 539, 1692
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 2 cut(s) 522, 1601
AspLEI GCGC 3 cut(s) 349, 967, 1648
AspS9I GGNCC 4 cut(s) 230, 540, 641, 1303
AsuHPI GGTGA 4 cut(s) 286, 401, 911, 1476
AsuII TTCGAA 1 cut(s) 1605
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 2 cut(s) 641, 1303
AxyI CCTNAGG 2 cut(s) 273, 1743
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 868
BccI CCATC 5 cut(s) 281, 386, 635, 641, 703
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 2 cut(s) 969, 1371
BclI TGATCA 2 cut(s) 795, 802
BcoDI GTCTC 5 cut(s) 224, 677, 1190, 1418, 1754
BfaI CTAG 7 cut(s) 171, 234, 303, 537, 767, 786, 1034
BfmI CTRYAG 1 cut(s) 1649
BfoI RGCGCY 2 cut(s) 350, 968
BlpI GCTNAGC 1 cut(s) 1173
Bme1390I CCNGG 2 cut(s) 969, 1371
Bme18I GGWCC 2 cut(s) 641, 1303
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 4 cut(s) 230, 540, 641, 1303
BmiI GGNNCC 1 cut(s) 1725
BmrFI CCNGG 2 cut(s) 969, 1371
BmsI GCATC 5 cut(s) 613, 1126, 1315, 1402, 1426
BoxI GACNNNNGTC 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 854
BpmI CTGGAG 3 cut(s) 1272, 1533, 1632
Bpu10I CCTNAGC 1 cut(s) 907
Bpu1102I GCTNAGC 1 cut(s) 1173
Bpu14I TTCGAA 1 cut(s) 1605
BpuEI CTTGAG 2 cut(s) 464, 1319
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 3 cut(s) 224, 677, 1754
BsaJI CCNNGG 5 cut(s) 327, 687, 1038, 1146, 1719
BsaXI ACNNNNNCTCC 4 cut(s) 1515, 1545, 1553, 1583
Bsc4I CCNNNNNNNGG 6 cut(s) 421, 548, 841, 974, 1039, 1376
Bse1I ACTGG 2 cut(s) 901, 1059
Bse21I CCTNAGG 2 cut(s) 273, 1743
Bse3DI GCAATG 4 cut(s) 297, 1128, 1475, 1584
BseBI CCWGG 2 cut(s) 969, 1371
BseDI CCNNGG 5 cut(s) 327, 687, 1038, 1146, 1719
BseGI GGATG 6 cut(s) 262, 714, 831, 895, 1330, 1441
BseLI CCNNNNNNNGG 6 cut(s) 421, 548, 841, 974, 1039, 1376
BseMI GCAATG 4 cut(s) 297, 1128, 1475, 1584
BseNI ACTGG 2 cut(s) 901, 1059
BseRI GAGGAG 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 693
BshFI GGCC 3 cut(s) 231, 541, 1694
BsiEI CGRYCG 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 1 cut(s) 1625
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 6 cut(s) 421, 548, 841, 974, 1039, 1376
BsmAI GTCTC 5 cut(s) 224, 677, 1190, 1418, 1754
BsmFI GGGAC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 3 cut(s) 231, 541, 1694
Bso31I GGTCTC 3 cut(s) 224, 677, 1754
BsoBI CYCGRG 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 1605
Bsp1286I GDGCHC 1 cut(s) 868
Bsp143I GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
Bsp1720I GCTNAGC 1 cut(s) 1173
Bsp19I CCATGG 2 cut(s) 327, 1038
BspACI CCGC 2 cut(s) 27, 1413
BspANI GGCC 3 cut(s) 231, 541, 1694
BspLI GGNNCC 1 cut(s) 1725
BspPI GGATC 1 cut(s) 1616
BspQI GCTCTTC 1 cut(s) 513
BspT104I TTCGAA 1 cut(s) 1605
BspTNI GGTCTC 3 cut(s) 224, 677, 1754
BsrDI GCAATG 4 cut(s) 297, 1128, 1475, 1584
BsrI ACTGG 2 cut(s) 901, 1059
BssECI CCNNGG 5 cut(s) 327, 687, 1038, 1146, 1719
BssMI GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 327, 1038, 1146, 1719
Bst2UI CCWGG 2 cut(s) 969, 1371
Bst4CI ACNGT 4 cut(s) 502, 691, 1307, 1405
Bst6I CTCTTC 2 cut(s) 28, 513
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1343
BstBI TTCGAA 1 cut(s) 1605
BstC8I GCNNGC 2 cut(s) 204, 1227
BstDSI CCRYGG 3 cut(s) 327, 687, 1038
BstF5I GGATG 6 cut(s) 262, 714, 831, 895, 1330, 1441
BstH2I RGCGCY 2 cut(s) 350, 968
BstHHI GCGC 3 cut(s) 349, 967, 1648
BstKTI GATC 7 cut(s) 516, 798, 805, 813, 822, 1078, 1624
BstMAI GTCTC 5 cut(s) 224, 677, 1190, 1418, 1754
BstMBI GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
BstMCI CGRYCG 1 cut(s) 693
BstNI CCWGG 2 cut(s) 969, 1371
BstPAI GACNNNNGTC 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 967, 1369
BstSFI CTRYAG 1 cut(s) 1649
BstV2I GAAGAC 1 cut(s) 854
Bsu36I CCTNAGG 2 cut(s) 273, 1743
BsuRI GGCC 3 cut(s) 231, 541, 1694
BtgI CCRYGG 3 cut(s) 327, 687, 1038
BtsCI GGATG 6 cut(s) 262, 714, 831, 895, 1330, 1441
BtsI GCAGTG 2 cut(s) 402, 813
BtsIMutI CAGTG 4 cut(s) 402, 798, 813, 1401
Cac8I GCNNGC 2 cut(s) 204, 1227
CaiI CAGNNNCTG 2 cut(s) 1025, 1286
CfoI GCGC 3 cut(s) 349, 967, 1648
Cfr13I GGNCC 4 cut(s) 230, 540, 641, 1303
CseI GACGC 2 cut(s) 396, 439
Csp6I GTAC 4 cut(s) 1030, 1466, 1570, 1679
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 6 cut(s) 328, 437, 994, 1039, 1045, 1753
CviQI GTAC 4 cut(s) 1030, 1466, 1570, 1679
DpnI GATC 7 cut(s) 515, 797, 804, 812, 821, 1077, 1623
DpnII GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
Eam1104I CTCTTC 2 cut(s) 28, 513
EarI CTCTTC 2 cut(s) 28, 513
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 4 cut(s) 327, 1038, 1146, 1719
Eco31I GGTCTC 3 cut(s) 224, 677, 1754
Eco47I GGWCC 2 cut(s) 641, 1303
Eco47III AGCGCT 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 509, 1199
Eco81I CCTNAGG 2 cut(s) 273, 1743
Eco88I CYCGRG 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 967, 1369
EcoT14I CCWWGG 4 cut(s) 327, 1038, 1146, 1719
ErhI CCWWGG 4 cut(s) 327, 1038, 1146, 1719
FaeI CATG 6 cut(s) 331, 440, 997, 1042, 1048, 1756
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 1 cut(s) 409
FatI CATG 6 cut(s) 327, 436, 993, 1038, 1044, 1752
FauI CCCGC 1 cut(s) 1420
FauNDI CATATG 1 cut(s) 1591
FbaI TGATCA 2 cut(s) 795, 802
FokI GGATG 6 cut(s) 269, 721, 818, 902, 1337, 1448
FspBI CTAG 7 cut(s) 171, 234, 303, 537, 767, 786, 1034
GlaI GCGC 3 cut(s) 348, 966, 1647
GsuI CTGGAG 3 cut(s) 1272, 1533, 1632
HaeII RGCGCY 2 cut(s) 350, 968
HaeIII GGCC 3 cut(s) 231, 541, 1694
HapII CCGG 1 cut(s) 1625
HgaI GACGC 2 cut(s) 396, 439
HhaI GCGC 3 cut(s) 349, 967, 1648
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 331, 440, 997, 1042, 1048, 1756
Hin6I GCGC 3 cut(s) 347, 965, 1646
HinP1I GCGC 3 cut(s) 347, 965, 1646
HincII GTYRAC 1 cut(s) 1705
HindII GTYRAC 1 cut(s) 1705
HindIII AAGCTT 3 cut(s) 200, 929, 1310
HinfI GANTC 8 cut(s) 291, 380, 466, 665, 1115, 1202, 1214, 1597
HpaII CCGG 1 cut(s) 1625
HphI GGTGA 4 cut(s) 286, 401, 911, 1476
Hpy166II GTNNAC 2 cut(s) 925, 1705
Hpy8I GTNNAC 2 cut(s) 925, 1705
HpyAV CCTTC 3 cut(s) 698, 1352, 1514
HpyCH4III ACNGT 4 cut(s) 502, 691, 1307, 1405
HpyCH4IV ACGT 2 cut(s) 121, 1447
HpyCH4V TGCA 8 cut(s) 11, 344, 884, 1010, 1133, 1139, 1328, 1393
HpySE526I ACGT 2 cut(s) 121, 1447
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 331, 440, 997, 1042, 1048, 1756
HspAI GCGC 3 cut(s) 347, 965, 1646
Ksp22I TGATCA 2 cut(s) 795, 802
Kzo9I GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 6 cut(s) 871, 1022, 1277, 1454, 1729, 1744
LweI GCATC 5 cut(s) 613, 1126, 1315, 1402, 1426
MaeI CTAG 7 cut(s) 171, 234, 303, 537, 767, 786, 1034
MaeII ACGT 2 cut(s) 121, 1447
MaeIII GTNAC 9 cut(s) 292, 315, 451, 725, 745, 892, 1099, 1482, 1633
MalI GATC 7 cut(s) 515, 797, 804, 812, 821, 1077, 1623
MboI GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
MfeI CAATTG 1 cut(s) 1079
MhlI GDGCHC 1 cut(s) 868
MluCI AATT 5 cut(s) 260, 489, 1079, 1154, 1236
MlyI GAGTC 3 cut(s) 300, 374, 1208
MmeI TCCRAC 3 cut(s) 234, 619, 1255
MroXI GAANNNNTTC 2 cut(s) 522, 1601
MseI TTAA 3 cut(s) 960, 1269, 1419
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 2 cut(s) 1177, 1490
MspI CCGG 1 cut(s) 1625
MspR9I CCNGG 2 cut(s) 969, 1371
MunI CAATTG 1 cut(s) 1079
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 2 cut(s) 969, 1371
NcoI CCATGG 2 cut(s) 327, 1038
NdeI CATATG 1 cut(s) 1591
NdeII GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
NlaIII CATG 6 cut(s) 331, 440, 997, 1042, 1048, 1756
NlaIV GGNNCC 1 cut(s) 1725
NmuCI GTSAC 5 cut(s) 292, 451, 1099, 1482, 1633
NspV TTCGAA 1 cut(s) 1605
PciSI GCTCTTC 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 1662
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 2 cut(s) 522, 1601
PfeI GAWTC 5 cut(s) 466, 665, 1115, 1202, 1597
PflMI CCANNNNNTGG 2 cut(s) 974, 1376
PleI GAGTC 3 cut(s) 299, 374, 1208
PpsI GAGTC 3 cut(s) 299, 374, 1208
PshAI GACNNNNGTC 1 cut(s) 689
Psp1406I AACGTT 1 cut(s) 1447
Psp6I CCWGG 2 cut(s) 967, 1369
PspGI CCWGG 2 cut(s) 967, 1369
PspN4I GGNNCC 1 cut(s) 1725
PspPI GGNCC 4 cut(s) 230, 540, 641, 1303
PstNI CAGNNNCTG 2 cut(s) 1025, 1286
PvuII CAGCTG 2 cut(s) 1177, 1490
RsaI GTAC 4 cut(s) 1031, 1467, 1571, 1680
RsaNI GTAC 4 cut(s) 1030, 1466, 1570, 1679
RseI CAYNNNNRTG 1 cut(s) 1043
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 3 cut(s) 960, 1269, 1419
Sau3AI GATC 7 cut(s) 513, 795, 802, 810, 819, 1075, 1621
Sau96I GGNCC 4 cut(s) 230, 540, 641, 1303
SchI GAGTC 3 cut(s) 300, 374, 1208
ScrFI CCNGG 2 cut(s) 969, 1371
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 5 cut(s) 613, 1126, 1315, 1402, 1426
SfcI CTRYAG 1 cut(s) 1649
SfuI TTCGAA 1 cut(s) 1605
SinI GGWCC 2 cut(s) 641, 1303
SmiMI CAYNNNNRTG 1 cut(s) 1043
SmlI CTYRAG 2 cut(s) 479, 1298
SmoI CTYRAG 2 cut(s) 479, 1298
Sse9I AATT 5 cut(s) 260, 489, 1079, 1154, 1236
SsiI CCGC 2 cut(s) 27, 1413
SspMI CTAG 7 cut(s) 171, 234, 303, 537, 767, 786, 1034
StyD4I CCNGG 2 cut(s) 967, 1369
StyI CCWWGG 4 cut(s) 327, 1038, 1146, 1719
TaaI ACNGT 4 cut(s) 502, 691, 1307, 1405
TaiI ACGT 2 cut(s) 124, 1450
TaqI TCGA 8 cut(s) 516, 630, 693, 1118, 1194, 1320, 1353, 1605
TasI AATT 5 cut(s) 260, 489, 1079, 1154, 1236
TatI WGTACW 1 cut(s) 1465
TfiI GAWTC 5 cut(s) 466, 665, 1115, 1202, 1597
Tru1I TTAA 3 cut(s) 960, 1269, 1419
Tru9I TTAA 3 cut(s) 960, 1269, 1419
TscAI CASTG 4 cut(s) 409, 805, 820, 1408
TseFI GTSAC 5 cut(s) 292, 451, 1099, 1482, 1633
Tsp45I GTSAC 5 cut(s) 292, 451, 1099, 1482, 1633
TspDTI ATGAA 3 cut(s) 273, 660, 1458
TspGWI ACGGA 3 cut(s) 22, 858, 1654
TspRI CASTG 4 cut(s) 409, 805, 820, 1408
Van91I CCANNNNNTGG 2 cut(s) 974, 1376
VpaK11BI GGWCC 2 cut(s) 641, 1303
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmnI GAANNNNTTC 2 cut(s) 522, 1601
XspI CTAG 7 cut(s) 171, 234, 303, 537, 767, 786, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.