Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016669

Physical Location & Seq

Genomic Coordinates Reverse (-)

64847911 .. 64855925

Gene Structure 8015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG380000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGCAAGCCGGCATTGATAAGCTTGCTGATGCTGTTGGCCTTACTCTTGGTCCCAGAGGGAGGAATGTTGTGTTGGATGAGTACGGTAGCCCTAAAGTGGTGAATGACGGAGTAACAATTGCTAGAGCTATTGAGCTACCTGATGCTATGGAAAATGCTGGCGCAGCTCTCATTAGGGAGGTTGCTAGTAAGACCAATGATTCTGCTGGTGACGGCACAACAACAGCATCCATTCTTGCACGCGAGATAATCAAGCTTGGGCTTTTGAGTGTCACCTCTGGTGCAAACCCTGTTTCAATTAAGAAGGGGATTGATAAAACTGTACAGGCATTGGTGGACGAACTAGAGAACAAGTCTAGGCCTGTTAAGGGTCGTGATGATGTTAAAGCTGTTGCAACTATTTCTGCTGGGAATGATGAGCAAATTGGAACAATGATTGCTGATGCTATCGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCATTTGAGACGACCGTCGAAGTGGAAGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAATTTGTTACAAACCCGGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGTCTTGATTACAGACCAGAAGATTTCAGCTATCAAGGACATAATTCCCCTGTTAGAAAAGACCACTCAGTTGAGAAGCCCTCTGCTTATTATTGCTGAGGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATACTGAATGTTGCTGCCATCAAAGCTCCAGGTTTTGGTGAGCGCAGAAAGGCTCTCCTCCAAGATATTGCCATTTTAACTGGTGCCGAGTTTCAAGCCAGTGATCTTGGTCTACTGATTGAGAACACCACAGTTGAGCAGCTTGGTTTGGCCAGAAAGGTGACAATCTCGAAGGACTCCACTACCATCATTGCTGATCAAGCTTCAAAGGATGAGTTGCAATCTAGAATTGCACAATTGAAAAAGGAGTTGTCTGAAACAGATTCTGTATATGACACTGAGAAATTGGCTGAGAGGATTGCCAAACTATCTGGGGGAGTTGCTGTTATAAAGGTTGGTGCTGCTACTGAAACCGAACTTGAGGACCGTAAGCTCCGTATTGAAGATGCCAAGAATGCCACTTTTGCTGCCATAGAGGAAGGGATTGTTCCTGGTGGCGGTGCTGCATTGGTACATCTTTCAACATATGTCCCTGCAATCAAGGACAGACTTGAAGATGCAGATGAGAAGCTAGGCGCTGACATTGTGCAGAAGGCTCTGGTAGCACCAGCAGCATTGATAGCTCAAAATGCTGGAATTGAAGGTGAAGTGGTGGTGGAGAAACTAAAAGAGAGTGAATGGGAGGTCGGCTACAATGCAATGACAGACACATACGAGAACTTAGTGGATGCTGGTGTTATCGACCCAGCAAAGGTTACAAGATGTGCTCTGCAGAATGCTGCCTCAGTTGCAGGAATGGTCTTGACCACTCAGGCTATTGTGGTGGAGAAGGCTAAGCCCAAGTCACCTGCTGCTGCTGCTGCACAAGGACTTACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

526

Amino Acids

55.37

Weight (kDa)

4.72

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	8 - 510	9.4e-77	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28000
fragaria_vesca	FvH4_3g31450
malus_domestica	MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica	Prupe.6G106800_v2.0.a1
pyrus_communis	pycom11g11710
rosa_chinensis	RchiOBHm_Chr5g0058151
rosa_laevigata	RLG00000035195
rosa_multiflora	Rmu_sc0000367.1_g000017
rosa_roxburghii	Rroxscaffold_1G00022440
rosa_rugosa	Rorug05G0311700
rosa_samantha	Rh5AG380000 Rh5CG414900
rosa_wichuraiana	Rw5G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1088
AarI	CACCTGC	1 cut(s)	1555
Acc36I	ACCTGC	1 cut(s)	1555
AccB1I	GGYRCC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	760, 871
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	1197
AcoI	YGGCCR	1 cut(s)	909
AfaI	GTAC	3 cut(s)	83, 324, 1212
AfiI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1196, 1450
AgsI	TTSAA	8 cut(s)	297, 854, 966, 1000, 1142, 1221, 1253, 1340
AjnI	CCWGG	2 cut(s)	787, 1189
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	1468
Alw26I	GTCTC	2 cut(s)	497, 718
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	3 cut(s)	37, 359, 909
AspLEI	GCGC	3 cut(s)	164, 804, 1277
AspS9I	GGNCC	3 cut(s)	50, 461, 1123
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	7 cut(s)	112, 221, 265, 809, 931, 1355, 1536
AvaII	GGWCC	3 cut(s)	50, 461, 1123
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	1468
BbvCI	CCTCAGC	1 cut(s)	705
BccI	CCATC	3 cut(s)	461, 785, 953
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	789, 1191
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	497, 718
BfaI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
BfmI	CTRYAG	1 cut(s)	1469
BfoI	RGCGCY	1 cut(s)	1278
BfuAI	ACCTGC	1 cut(s)	1555
BlpI	GCTNAGC	1 cut(s)	1533
Bme1390I	CCNGG	3 cut(s)	575, 789, 1191
Bme18I	GGWCC	3 cut(s)	50, 461, 1123
BmgT120I	GGNCC	3 cut(s)	50, 461, 1123
BmiI	GGNNCC	2 cut(s)	52, 844
BmrFI	CCNGG	3 cut(s)	575, 789, 1191
BmsI	GCATC	7 cut(s)	19, 133, 236, 433, 1135, 1246, 1417
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	4 cut(s)	673, 705, 698, 730
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	1533
BpuEI	CTTGAG	1 cut(s)	1139
BpuMI	CCSGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1196, 1450
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	844, 858
Bse3DI	GCAATG	2 cut(s)	948, 1404
BseBI	CCWGG	2 cut(s)	789, 1191
BseGI	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1432
BseLI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1196, 1450
BseMI	GCAATG	2 cut(s)	948, 1404
BseMII	CTCAG	6 cut(s)	689, 696, 1029, 1041, 1497, 1523
BseNI	ACTGG	2 cut(s)	844, 858
BseRI	GAGGAG	1 cut(s)	806
BseYI	CCCAGC	2 cut(s)	407, 1444
BsgI	GTGCAG	2 cut(s)	1307, 1545
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	39, 361, 911
BshNI	GGYRCC	1 cut(s)	842
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	1468
BsiSI	CCGG	2 cut(s)	9, 575
BslFI	GGGAC	2 cut(s)	36, 1214
BslI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1196, 1450
BsmAI	GTCTC	2 cut(s)	497, 718
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	36, 1214
BsmI	GAATGC	3 cut(s)	607, 1159, 1480
BsnI	GGCC	3 cut(s)	39, 361, 911
Bsp1286I	GDGCHC	1 cut(s)	1468
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	862, 955
Bsp1720I	GCTNAGC	1 cut(s)	1533
BspACI	CCGC	1 cut(s)	1197
BspANI	GGCC	3 cut(s)	39, 361, 911
BspCNI	CTCAG	6 cut(s)	688, 697, 1030, 1042, 1496, 1522
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	52, 844
BspMAI	CTGCAG	1 cut(s)	1473
BspMI	ACCTGC	1 cut(s)	1555
BspT107I	GGYRCC	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	948, 1404
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	844, 858
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	2 cut(s)	862, 955
BssNAI	GTATAC	1 cut(s)	761
Bst1107I	GTATAC	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	789, 1191
Bst4CI	ACNGT	6 cut(s)	86, 322, 511, 892, 1127, 1576
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	5 cut(s)	6, 10, 24, 160, 241
BstDEI	CTNAG	8 cut(s)	675, 705, 1038, 1050, 1420, 1483, 1509, 1533
BstF5I	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1432
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	1278
BstHHI	GCGC	3 cut(s)	164, 804, 1277
BstKTI	GATC	2 cut(s)	865, 958
BstMAI	GTCTC	2 cut(s)	497, 718
BstMBI	GATC	2 cut(s)	862, 955
BstMCI	CGRYCG	1 cut(s)	510
BstNI	CCWGG	2 cut(s)	789, 1191
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	573, 787, 1189
BstSFI	CTRYAG	1 cut(s)	1469
BstUI	CGCG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	480
BstZ17I	GTATAC	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	39, 361, 911
BtsCI	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1432
BtsIMutI	CAGTG	2 cut(s)	865, 1035
BveI	ACCTGC	1 cut(s)	1555
Cac8I	GCNNGC	5 cut(s)	6, 10, 24, 160, 241
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	3 cut(s)	164, 804, 1277
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	50, 461, 1123
Csp6I	GTAC	3 cut(s)	82, 323, 1211
CviQI	GTAC	3 cut(s)	82, 323, 1211
DdeI	CTNAG	8 cut(s)	675, 705, 1038, 1050, 1420, 1483, 1509, 1533
DpnI	GATC	2 cut(s)	864, 957
DpnII	GATC	2 cut(s)	862, 955
EaeI	YGGCCR	1 cut(s)	909
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	50, 461, 1123
EcoRII	CCWGG	2 cut(s)	787, 1189
Esp3I	CGTCTC	1 cut(s)	497
FaqI	GGGAC	2 cut(s)	36, 1214
FauNDI	CATATG	1 cut(s)	1225
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	2 cut(s)	760, 871
FokI	GGATG	6 cut(s)	89, 214, 478, 722, 983, 1439
FspBI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
GlaI	GCGC	3 cut(s)	163, 803, 1276
GsaI	CCCAGC	2 cut(s)	411, 1448
GsuI	CTGGAG	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	1278
HaeIII	GGCC	3 cut(s)	39, 361, 911
HapII	CCGG	2 cut(s)	9, 575
HhaI	GCGC	3 cut(s)	164, 804, 1277
Hin6I	GCGC	3 cut(s)	162, 802, 1275
HinP1I	GCGC	3 cut(s)	162, 802, 1275
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	3 cut(s)	20, 254, 960
HinfI	GANTC	6 cut(s)	200, 485, 609, 733, 935, 1022
HpaII	CCGG	2 cut(s)	9, 575
HphI	GGTGA	7 cut(s)	112, 221, 265, 809, 931, 1355, 1536
Hpy166II	GTNNAC	4 cut(s)	337, 745, 761, 872
Hpy188I	TCNGA	1 cut(s)	1015
Hpy188III	TCNNGA	5 cut(s)	374, 613, 928, 984, 1501
Hpy8I	GTNNAC	4 cut(s)	337, 745, 761, 872
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	7 cut(s)	298, 518, 925, 1172, 1285, 1334, 1522
HpyCH4III	ACNGT	6 cut(s)	86, 322, 511, 892, 1127, 1576
HpyF3I	CTNAG	8 cut(s)	675, 705, 1038, 1050, 1420, 1483, 1509, 1533
HspAI	GCGC	3 cut(s)	162, 802, 1275
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	2 cut(s)	862, 955
LmnI	GCTCC	2 cut(s)	790, 1137
LweI	GCATC	7 cut(s)	19, 133, 236, 433, 1135, 1246, 1417
MaeI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
MaeIII	GTNAC	7 cut(s)	112, 209, 271, 565, 919, 1453, 1542
MalI	GATC	2 cut(s)	864, 957
MboI	GATC	2 cut(s)	862, 955
MboII	GAAGA	5 cut(s)	480, 533, 640, 1154, 1265
MfeI	CAATTG	2 cut(s)	117, 995
MhlI	GDGCHC	1 cut(s)	1468
MlsI	TGGCCA	1 cut(s)	911
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	4 cut(s)	494, 618, 727, 929
MmeI	TCCRAC	2 cut(s)	54, 439
Mox20I	TGGCCA	1 cut(s)	911
MroNI	GCCGGC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	4 cut(s)	300, 366, 384, 836
Msp20I	TGGCCA	1 cut(s)	911
MspI	CCGG	2 cut(s)	9, 575
MspR9I	CCNGG	3 cut(s)	575, 789, 1191
MunI	CAATTG	2 cut(s)	117, 995
Mva1269I	GAATGC	3 cut(s)	607, 1159, 1480
MvaI	CCWGG	2 cut(s)	789, 1191
MvnI	CGCG	1 cut(s)	243
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	1225
NdeII	GATC	2 cut(s)	862, 955
NgoMIV	GCCGGC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	52, 844
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	4 cut(s)	209, 271, 919, 1542
PaqCI	CACCTGC	1 cut(s)	1555
PceI	AGGCCT	1 cut(s)	361
PctI	GAATGC	3 cut(s)	607, 1159, 1480
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	200, 1022
PflMI	CCANNNNNTGG	1 cut(s)	794
PleI	GAGTC	4 cut(s)	493, 617, 727, 929
PpsI	GAGTC	4 cut(s)	493, 617, 727, 929
PshAI	GACNNNNGTC	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	1088
Psp6I	CCWGG	2 cut(s)	787, 1189
PspFI	CCCAGC	2 cut(s)	407, 1444
PspGI	CCWGG	2 cut(s)	787, 1189
PspN4I	GGNNCC	2 cut(s)	52, 844
PspPI	GGNCC	3 cut(s)	50, 461, 1123
PstI	CTGCAG	1 cut(s)	1473
PstNI	CAGNNNCTG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	83, 324, 1212
RsaNI	GTAC	3 cut(s)	82, 323, 1211
SaqAI	TTAA	4 cut(s)	300, 366, 384, 836
Sau3AI	GATC	2 cut(s)	862, 955
Sau96I	GGNCC	3 cut(s)	50, 461, 1123
SchI	GAGTC	4 cut(s)	494, 618, 727, 929
ScrFI	CCNGG	3 cut(s)	575, 789, 1191
SduI	GDGCHC	1 cut(s)	1468
SfaNI	GCATC	7 cut(s)	19, 133, 236, 433, 1135, 1246, 1417
SfcI	CTRYAG	1 cut(s)	1469
SinI	GGWCC	3 cut(s)	50, 461, 1123
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	1197
SspMI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	3 cut(s)	573, 787, 1189
TaaI	ACNGT	6 cut(s)	86, 322, 511, 892, 1127, 1576
TaqI	TCGA	4 cut(s)	450, 513, 929, 1440
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	200, 1022
Tru1I	TTAA	4 cut(s)	300, 366, 384, 836
Tru9I	TTAA	4 cut(s)	300, 366, 384, 836
TscAI	CASTG	2 cut(s)	865, 1042
TseFI	GTSAC	4 cut(s)	209, 271, 919, 1542
Tsp45I	GTSAC	4 cut(s)	209, 271, 919, 1542
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	2 cut(s)	123, 1124
TspRI	CASTG	2 cut(s)	865, 1042
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	50, 461, 1123
XbaI	TCTAGA	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	760, 871
XspI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.