Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016669

Physical Location & Seq

Genomic Coordinates Reverse (-)

25696979 .. 25700696

Gene Structure 3718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGCGTCCGTCAACGCTCTCACCTCTGCTTCCATTCTCTGCTCGCCCAGACAGAGCTTGAGTAGGAGGGTAAGTCAGCAGCAAAAAAACAGGTCGAATTACAAGCAATCCAGGGGAAGGTTTGCTGTGAAGGCCACTGCCAAAGACATTGCCTTTGACCAGGACTCGAGGCGCGCTATGCAAGCCGGCATTGATAAGCTTGCTGATGCTGTTGGGCTTACTCTTGGTCCTAGAGGGAGAAATGTTGTGTTGGATGAGTACGGTAGCCCCAAAGTGGTGAATGATGGAGTGACAATTGCTAGAGCTATTGAGCTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTCATTAGGGAGGTTGCTAGTAAGACCAATGATTCTGCTGGTGACGGCACAACAACAGCATCCATTCTTGCACGGGAGATTATCAAGCTTGGGCTTTTGAGTGTCACCTCTGGTGCAAATCCCGTTTCAATAAAGAAGGGGATTGATAAAACTGTACAGGCGTTGGTGGAGGAACTAGAGAACAAGTCTAGGCCTGTTAAGGGTCGTGATGATATTAAAGCCGTTGCATCCATTTCTGCTGGGAATGATGAGCAAATTGGAACAATGATTGCTGATGCTATAGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAGTCATCATCCTCATTTGAAACTACTGTTGAGGTGGAAGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAGTTTGTTACAAACCCTGAGAAATTGATTGTTGAGTTTGAAAATGCAAGAGTCTTGGTTACAGACCAGAAAATTTCAGCTATCAAGGACATAATTCCCTTGTTAGAAAAGACTACACAGTTGAGAAGCCCTCTGCTTATTATTGCTGAGGATGTCACTGGGGAGGCTTTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATACTTAATGTGGCTGCCATCAAAGCTCCTGGTTTTGGTGAGCGTAGAAAGGCTCTCCTTCAAGATATTGCTATTTTGACAGGAGCCGAGTTTCAAGCCAATGATCTTGGTATGTTGATTGAGAACACCACAGTTGAGCAGCTTGGTTTGGCCAGGAAAGTGACAATCTCAAAGGACTCCACTACCATCATTGCTGATCAAGCTTCAAAGGATGAGTTGCAAACTAGAATTGCACAGTTGAAAAAGGAATTGTCTGAAACAGATTCTGTATATGACTCCGAGAAACTCGCTGAGAGGATAGCCAAACTATCTGGGGGAGTTGCTGTTATAAAGGTTGGGGCTGCTACTGAAACCGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCTACTTTTGCTGCCATAGAGGAAGGGATTGTTCCTGGTGGCGGTGCTGCATTGGTACATCTTTCAACATGTGTCCCTGCAATCAAGGACAAACTTGAAGATGCAGATGAGAAGCTAGGGGCTGATATTGTGCAGAAGGCTCTGGTAGCACCAGCAGCGTTGATAGCTCAAAATGCTGGAATTGAAGGGGAAGTGGTGGTAGAGAAACTAAAAGAGAGTGAATGGGAGGTTGGCTACAACGCAATGACAGACACATATGAGAACTTGGTGGATGCTGGTGTTATCGACCCTGCAAAGGTTACAAGATGTGCTTTGCAGAATGCTGCTTCAGTTGCAGGAATGGTCTTGACCACTCAGGCTATTGTGGTAGAGAAGGCTAAGCCCAAGTCACCTGCTGCTGCTGCGGCACAAGGACTTTCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

586

Amino Acids

61.9

Weight (kDa)

5.03

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	67 - 569	7.5e-76	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28000
fragaria_vesca	FvH4_3g31450
malus_domestica	MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica	Prupe.6G106800_v2.0.a1
pyrus_communis	pycom11g11710
rosa_chinensis	RchiOBHm_Chr5g0058151
rosa_laevigata	RLG00000035195
rosa_multiflora	Rmu_sc0000367.1_g000017
rosa_roxburghii	Rroxscaffold_1G00022440
rosa_rugosa	Rorug05G0311700
rosa_samantha	Rh5AG380000 Rh5CG414900
rosa_wichuraiana	Rw5G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
AarI	CACCTGC	1 cut(s)	1732
Acc36I	ACCTGC	1 cut(s)	1732
AccI	GTMKAC	1 cut(s)	937
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	1374, 1736
AcoI	YGGCCR	1 cut(s)	1086
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	1 cut(s)	1644
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	260, 501, 1389
AfiI	CCNNNNNNNGG	7 cut(s)	117, 274, 545, 971, 1318, 1373, 1627
AflIII	ACRYGT	1 cut(s)	1400
AjnI	CCWGG	5 cut(s)	110, 159, 964, 1088, 1366
AjuI	GAANNNNNNNTTGG	2 cut(s)	1545, 1577
AlwNI	CAGNNNCTG	1 cut(s)	1202
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	132, 536, 1086
ApoI	RAATTY	1 cut(s)	807
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	2 cut(s)	174, 176
AspS9I	GGNCC	3 cut(s)	227, 638, 1300
AsuHPI	GGTGA	6 cut(s)	13, 289, 398, 442, 986, 1713
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	3 cut(s)	227, 638, 1300
BalI	TGGCCA	1 cut(s)	1088
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	4 cut(s)	278, 638, 962, 1130
BceAI	ACGGC	2 cut(s)	406, 551
BciT130I	CCWGG	5 cut(s)	112, 161, 966, 1090, 1368
BclI	TGATCA	1 cut(s)	1132
BfaI	CTAG	7 cut(s)	231, 300, 363, 521, 534, 1161, 1448
BfmI	CTRYAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	1732
BlpI	GCTNAGC	1 cut(s)	1710
Bme1390I	CCNGG	5 cut(s)	112, 161, 966, 1090, 1368
Bme18I	GGWCC	3 cut(s)	227, 638, 1300
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	227, 638, 1300
BmiI	GGNNCC	1 cut(s)	1021
BmrFI	CCNGG	5 cut(s)	112, 161, 966, 1090, 1368
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	8 cut(s)	196, 310, 413, 581, 610, 1312, 1423, 1594
BmuI	ACTGGG	1 cut(s)	903
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	1710
BpuEI	CTTGAG	2 cut(s)	79, 1316
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 1245, 1275
Bsc4I	CCNNNNNNNGG	7 cut(s)	117, 274, 545, 971, 1318, 1373, 1627
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	898
Bse3DI	GCAATG	3 cut(s)	147, 1125, 1581
BseBI	CCWGG	5 cut(s)	112, 161, 966, 1090, 1368
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	8 cut(s)	259, 404, 572, 668, 892, 1153, 1327, 1609
BseLI	CCNNNNNNNGG	7 cut(s)	117, 274, 545, 971, 1318, 1373, 1627
BseMI	GCAATG	3 cut(s)	147, 1125, 1581
BseMII	CTCAG	5 cut(s)	744, 749, 873, 1218, 1700
BseNI	ACTGG	1 cut(s)	898
BsePI	GCGCGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	2 cut(s)	360, 1484
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	134, 538, 1088
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	1391
BslI	CCNNNNNNNGG	7 cut(s)	117, 274, 545, 971, 1318, 1373, 1627
BsmFI	GGGAC	1 cut(s)	1391
BsmI	GAATGC	2 cut(s)	1336, 1657
BsnI	GGCC	3 cut(s)	134, 538, 1088
BsoBI	CYCGRG	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	1039, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1710
BspACI	CCGC	2 cut(s)	1374, 1736
BspANI	GGCC	3 cut(s)	134, 538, 1088
BspCNI	CTCAG	5 cut(s)	745, 748, 874, 1219, 1699
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	1021
BspMI	ACCTGC	1 cut(s)	1732
BsrDI	GCAATG	3 cut(s)	147, 1125, 1581
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	898
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	111
BssHII	GCGCGC	1 cut(s)	172
BssMI	GATC	2 cut(s)	1039, 1132
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	5 cut(s)	112, 161, 966, 1090, 1368
Bst4CI	ACNGT	7 cut(s)	263, 499, 688, 855, 1069, 1173, 1304
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	5 cut(s)	44, 174, 183, 187, 201
BstDEI	CTNAG	6 cut(s)	735, 753, 882, 1227, 1686, 1710
BstF5I	GGATG	8 cut(s)	259, 404, 572, 668, 892, 1153, 1327, 1609
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	174, 176
BstKTI	GATC	2 cut(s)	1042, 1135
BstMBI	GATC	2 cut(s)	1039, 1132
BstNI	CCWGG	5 cut(s)	112, 161, 966, 1090, 1368
BstNSI	RCATGY	1 cut(s)	1404
BstSCI	CCNGG	5 cut(s)	110, 159, 964, 1088, 1366
BstSFI	CTRYAG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	174
BstZ17I	GTATAC	1 cut(s)	938
BsuRI	GGCC	3 cut(s)	134, 538, 1088
BtsCI	GGATG	8 cut(s)	259, 404, 572, 668, 892, 1153, 1327, 1609
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 891
BveI	ACCTGC	1 cut(s)	1732
Cac8I	GCNNGC	5 cut(s)	44, 174, 183, 187, 201
CaiI	CAGNNNCTG	1 cut(s)	1202
CfoI	GCGC	2 cut(s)	174, 176
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	227, 638, 1300
Csp6I	GTAC	3 cut(s)	259, 500, 1388
CviAII	CATG	1 cut(s)	1401
CviQI	GTAC	3 cut(s)	259, 500, 1388
DdeI	CTNAG	6 cut(s)	735, 753, 882, 1227, 1686, 1710
DpnI	GATC	2 cut(s)	1041, 1134
DpnII	GATC	2 cut(s)	1039, 1132
EaeI	YGGCCR	1 cut(s)	1086
Eco147I	AGGCCT	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	227, 638, 1300
Eco57I	CTGAAG	1 cut(s)	1644
Eco88I	CYCGRG	1 cut(s)	166
EcoRII	CCWGG	5 cut(s)	110, 159, 964, 1088, 1366
FaeI	CATG	1 cut(s)	1404
FalI	AAGNNNNNCTT	2 cut(s)	1627, 1659
FaqI	GGGAC	1 cut(s)	1391
FatI	CATG	1 cut(s)	1400
FauNDI	CATATG	1 cut(s)	1588
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	937
FokI	GGATG	8 cut(s)	266, 391, 559, 655, 899, 1160, 1334, 1616
FspBI	CTAG	7 cut(s)	231, 300, 363, 521, 534, 1161, 1448
GlaI	GCGC	2 cut(s)	173, 175
GsaI	CCCAGC	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	134, 538, 1088
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	2 cut(s)	174, 176
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	1404
Hin6I	GCGC	2 cut(s)	172, 174
HinP1I	GCGC	2 cut(s)	172, 174
HincII	GTYRAC	2 cut(s)	13, 922
HindII	GTYRAC	2 cut(s)	13, 922
HindIII	AAGCTT	3 cut(s)	197, 431, 1137
HinfI	GANTC	8 cut(s)	164, 377, 662, 786, 910, 1112, 1199, 1211
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	6 cut(s)	13, 289, 398, 442, 986, 1713
Hpy166II	GTNNAC	3 cut(s)	13, 922, 938
Hpy188I	TCNGA	2 cut(s)	1192, 1216
Hpy188III	TCNNGA	3 cut(s)	551, 998, 1678
Hpy8I	GTNNAC	3 cut(s)	13, 922, 938
HpyAV	CCTTC	9 cut(s)	111, 124, 475, 695, 1004, 1349, 1462, 1511, 1699
HpyCH4III	ACNGT	7 cut(s)	263, 499, 688, 855, 1069, 1173, 1304
HpyF3I	CTNAG	6 cut(s)	735, 753, 882, 1227, 1686, 1710
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	1404
HspAI	GCGC	2 cut(s)	172, 174
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	1132
Kzo9I	GATC	2 cut(s)	1039, 1132
LmnI	GCTCC	3 cut(s)	967, 1019, 1314
LweI	GCATC	8 cut(s)	196, 310, 413, 581, 610, 1312, 1423, 1594
MaeI	CTAG	7 cut(s)	231, 300, 363, 521, 534, 1161, 1448
MaeIII	GTNAC	9 cut(s)	289, 386, 448, 742, 793, 889, 1096, 1630, 1719
MalI	GATC	2 cut(s)	1041, 1134
MboI	GATC	2 cut(s)	1039, 1132
MboII	GAAGA	2 cut(s)	710, 1442
MfeI	CAATTG	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	9 cut(s)	97, 294, 600, 758, 807, 828, 1164, 1184, 1512
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	6 cut(s)	158, 671, 795, 904, 1106, 1205
MmeI	TCCRAC	2 cut(s)	231, 616
Mox20I	TGGCCA	1 cut(s)	1088
MroNI	GCCGGC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	3 cut(s)	543, 561, 942
Msp20I	TGGCCA	1 cut(s)	1088
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	5 cut(s)	112, 161, 966, 1090, 1368
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	2 cut(s)	1336, 1657
MvaI	CCWGG	5 cut(s)	112, 161, 966, 1090, 1368
MvnI	CGCG	1 cut(s)	174
NaeI	GCCGGC	1 cut(s)	187
NdeI	CATATG	1 cut(s)	1588
NdeII	GATC	2 cut(s)	1039, 1132
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	1404
NlaIV	GGNNCC	1 cut(s)	1021
NmeAIII	GCCGAG	1 cut(s)	1048
NmuCI	GTSAC	6 cut(s)	289, 386, 448, 889, 1096, 1719
NspI	RCATGY	1 cut(s)	1404
PaeR7I	CTCGAG	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	1732
PauI	GCGCGC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	1400
PctI	GAATGC	2 cut(s)	1336, 1657
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	377, 1199
PleI	GAGTC	6 cut(s)	158, 670, 794, 904, 1106, 1205
PpsI	GAGTC	6 cut(s)	158, 670, 794, 904, 1106, 1205
PscI	ACATGT	1 cut(s)	1400
PsiI	TTATAA	1 cut(s)	1265
Psp6I	CCWGG	5 cut(s)	110, 159, 964, 1088, 1366
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	5 cut(s)	110, 159, 964, 1088, 1366
PspN4I	GGNNCC	1 cut(s)	1021
PspPI	GGNCC	3 cut(s)	227, 638, 1300
PspXI	VCTCGAGB	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	1202
PteI	GCGCGC	1 cut(s)	172
RsaI	GTAC	3 cut(s)	260, 501, 1389
RsaNI	GTAC	3 cut(s)	259, 500, 1388
SaqAI	TTAA	3 cut(s)	543, 561, 942
Sau3AI	GATC	2 cut(s)	1039, 1132
Sau96I	GGNCC	3 cut(s)	227, 638, 1300
SchI	GAGTC	6 cut(s)	158, 671, 795, 904, 1106, 1205
ScrFI	CCNGG	5 cut(s)	112, 161, 966, 1090, 1368
SfaNI	GCATC	8 cut(s)	196, 310, 413, 581, 610, 1312, 1423, 1594
SfcI	CTRYAG	1 cut(s)	624
Sfr274I	CTCGAG	1 cut(s)	166
SinI	GGWCC	3 cut(s)	227, 638, 1300
SlaI	CTCGAG	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	58, 166, 1295
SmoI	CTYRAG	3 cut(s)	58, 166, 1295
Sse9I	AATT	9 cut(s)	97, 294, 600, 758, 807, 828, 1164, 1184, 1512
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	1374, 1736
SspMI	CTAG	7 cut(s)	231, 300, 363, 521, 534, 1161, 1448
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	5 cut(s)	110, 159, 964, 1088, 1366
TaaI	ACNGT	7 cut(s)	263, 499, 688, 855, 1069, 1173, 1304
TaqI	TCGA	3 cut(s)	95, 167, 1617
TasI	AATT	9 cut(s)	97, 294, 600, 758, 807, 828, 1164, 1184, 1512
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	1739
TfiI	GAWTC	2 cut(s)	377, 1199
Tru1I	TTAA	3 cut(s)	543, 561, 942
Tru9I	TTAA	3 cut(s)	543, 561, 942
TscAI	CASTG	2 cut(s)	142, 898
TseFI	GTSAC	6 cut(s)	289, 386, 448, 889, 1096, 1719
Tsp45I	GTSAC	6 cut(s)	289, 386, 448, 889, 1096, 1719
TspGWI	ACGGA	2 cut(s)	1301, 1741
TspRI	CASTG	2 cut(s)	142, 898
VpaK11BI	GGWCC	3 cut(s)	227, 638, 1300
XapI	RAATTY	1 cut(s)	807
XceI	RCATGY	1 cut(s)	1404
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	937
XspI	CTAG	7 cut(s)	231, 300, 363, 521, 534, 1161, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.