Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016669

Physical Location & Seq

Genomic Coordinates Forward (+)

36704241 .. 36704873

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGTAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATAAAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTTTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCAATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

210

Amino Acids

23.43

Weight (kDa)

9.36

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	7.7e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28000
fragaria_vesca	FvH4_3g31450
malus_domestica	MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica	Prupe.6G106800_v2.0.a1
pyrus_communis	pycom11g11710
rosa_chinensis	RchiOBHm_Chr5g0058151
rosa_laevigata	RLG00000035195
rosa_multiflora	Rmu_sc0000367.1_g000017
rosa_roxburghii	Rroxscaffold_1G00022440
rosa_rugosa	Rorug05G0311700
rosa_samantha	Rh5AG380000 Rh5CG414900
rosa_wichuraiana	Rw5G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AccIII	TCCGGA	1 cut(s)	621
AciI	CCGC	5 cut(s)	82, 402, 447, 549, 628
AclWI	GGATC	4 cut(s)	188, 363, 382, 463
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	220, 476
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	4 cut(s)	130, 193, 583, 608
AluI	AGCT	4 cut(s)	130, 193, 583, 608
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	4 cut(s)	188, 363, 382, 463
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 515
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	585
BccI	CCATC	2 cut(s)	26, 427
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	1 cut(s)	628
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 626
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	598
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 622
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	191, 258
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	300, 585
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	5 cut(s)	82, 402, 447, 549, 628
BspCNI	CTCAG	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	6, 155, 626
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 463
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	7 cut(s)	109, 183, 213, 311, 358, 377, 458
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	180, 374, 455
BstYI	RGATCY	3 cut(s)	180, 374, 455
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	8 cut(s)	70, 293, 301, 350, 466, 496, 500, 523
CviJI	RGCY	9 cut(s)	53, 130, 193, 316, 564, 583, 588, 608, 627
CviKI_1	RGCY	9 cut(s)	53, 130, 193, 316, 564, 583, 588, 608, 627
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 457
DpnII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	8 cut(s)	69, 292, 300, 349, 465, 495, 499, 522
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	1 cut(s)	628
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 622
Hin1II	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 622
HphI	GGTGA	2 cut(s)	335, 515
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	2 cut(s)	177, 286
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 622
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
Kpn2I	TCCGGA	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
LmnI	GCTCC	2 cut(s)	84, 624
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	334, 551
MalI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 457
MboI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 538
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 455
MhlI	GDGCHC	2 cut(s)	300, 585
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	2 cut(s)	366, 423
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	3 cut(s)	193, 404, 630
MspI	CCGG	2 cut(s)	54, 622
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
NlaIII	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
NlaIV	GGNNCC	3 cut(s)	6, 155, 626
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	558
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 626
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	180, 374, 455
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	366, 423
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	300, 585
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	5 cut(s)	82, 402, 447, 549, 628
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 423
Tru9I	TTAA	2 cut(s)	366, 423
TseFI	GTSAC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	281, 476, 539
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.