Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016669

Physical Location & Seq

Genomic Coordinates Reverse (-)

62680482 .. 62683494

Gene Structure 3013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGCGTCTGCCAACGCTCTCACCTCTGCTTCTATTCTCTGCTCTCCCAGACAGAGCTTGAGTAGGAGGGTAAATCAGCAGCAAAACAACAGGCTGAATTACAAGCAATCGAGGGGGCGGTTTGCTGTGAAAGCCACTGCGAAAGACATAGCCTTTGACCAGGAGTCGAGGCGTGCTATGCAAGCCGGCATTGATAAGCTTGCTGATGCTGTTGGCCTTACTCTTGGTCCCAGAGGGAGGAATGTTGTGTTGGATGAGTACGGTAGCCCTAAAGTGGTGAATGATGGAGTTACAATTGCTAGAGCTATTGAGCTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTCATTAGGGAGGTTGCTAGTAAGACCAATGATTCTGCTGGTGACGGCACAACAACAGCATCCATTCTTGCACGGGAGATAATCAAGCTTGGGCTTTTGAGTGTCACCTCTGGTGCAAATCCCGTTTCAATTAAGAAGGGGATTGATAAAACTGTACAGGCATTGGTGGACGAACTAGAGAACATGTCTAGGCCTGTTAAGGGTCGTGATGATGTTAAAGCTGTTGCAACTATTTCTGCTGGGAATGATGAGCAAATTGGAACAATGATTGCCGATGCTATCGACAAGGTTGGACCTGACGGTGTTTTATCCATTGAGTCTTCATCCTCATTTGAGACTACCGTCGAAGTGGAGGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAATTTGTTACAAACCCGGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGTCTTGATTACAGACCAGAAGATTTCAGCTATCAAGGACATAATTCCCCTGTTAGAAAAGACCACTCAGTTGAGAAGCCCTCTGCTTATTATTGCTGAGGATGTCTCTGGGGAGGCTCTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATCCTTAATGTTGCTGCCATCAAAGCTCCAGGTTTTGGTGAGCGTAGAAAGGCTCTCCTCCAAGATGTTGCCATTTTGACTGGTGCTGAGTTTCAAGCCAGTGATCTTGGTCTACTGATTGAGAACACCACAGTTGAGCAGCTTGGTTTGGCCAGAAAGGTGACAATCTCGAAGGACTCCACTACCATCATTGCTGATCAAGCTTCAAAGGATGAGTTGCAAACTAGAATTGCACAATTGAAAAAGGAGTTGTCTGAAACAGATTCTGTATATGACTCTGAGAAATTGGCTGAGAGGATTGCCAAACTATCTGGGGGAGTTGCTGTTATAAAGGTTGGTGCTGCTACTGAAACTGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCCACTTTTGCTGCCATAGAGGAAGGGATTGTTCCTGGTGGCGGTGCTGCATTGGTACATCTTTCAACATGTGTCCCTGCAATCAAGGACAGACTTGAAGATGCAGATGAGAAGCTAGGTGCTGACATTGTGCAGAAGGCTCTGGTATCACCAGCAGCATTGATAGCTCAAAATGCTGGAATTGAAGGTGAAGTGGTGGTGGAGAAACTAAAAGAGAGTGAATGGGAGGTTGGCTACAATGCAATGACAGACACATACGAGAACTTAGTGGATGCTGGTGTTATCGACCCAGCAAAGGTCACAAGATGTGCTCTGCAGAATGCTGCCTCGGTTGCAGGAATGGTCTTGACCACTCAGGCTATTGTGGTGGAGAAGGCTAAGCCCAAGTCACCTGCTGCTGCTGCTGCACAAGGACTAACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

586

Amino Acids

61.91

Weight (kDa)

4.95

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	67 - 569	2.1e-76	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28000
fragaria_vesca	FvH4_3g31450
malus_domestica	MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica	Prupe.6G106800_v2.0.a1
pyrus_communis	pycom11g11710
rosa_chinensis	RchiOBHm_Chr5g0058151
rosa_laevigata	RLG00000035195
rosa_multiflora	Rmu_sc0000367.1_g000017
rosa_roxburghii	Rroxscaffold_1G00022440
rosa_rugosa	Rorug05G0311700
rosa_samantha	Rh5AG380000 Rh5CG414900
rosa_wichuraiana	Rw5G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
AarI	CACCTGC	1 cut(s)	1732
Acc36I	ACCTGC	1 cut(s)	1732
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	1048
AciI	CCGC	2 cut(s)	118, 1374
AcoI	YGGCCR	1 cut(s)	1086
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	260, 501, 1389
AfiI	CCNNNNNNNGG	7 cut(s)	237, 274, 545, 971, 1318, 1373, 1627
AflIII	ACRYGT	2 cut(s)	528, 1400
AgsI	TTSAA	7 cut(s)	474, 1031, 1143, 1177, 1398, 1430, 1517
AhdI	GACNNNNNGTC	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	159, 964, 1366
AjuI	GAANNNNNNNTTGG	4 cut(s)	233, 265, 1545, 1577
Alw21I	GWGCWC	1 cut(s)	1645
Alw26I	GTCTC	2 cut(s)	674, 895
AlwNI	CAGNNNCTG	1 cut(s)	1202
AoxI	GGCC	3 cut(s)	214, 536, 1086
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	3 cut(s)	227, 638, 1300
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	9 cut(s)	13, 289, 398, 442, 986, 1108, 1473, 1532, 1713
AvaII	GGWCC	3 cut(s)	227, 638, 1300
BalI	TGGCCA	1 cut(s)	1088
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	1645
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	3 cut(s)	278, 962, 1130
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	3 cut(s)	161, 966, 1368
BciVI	GTATCC	1 cut(s)	947
BclI	TGATCA	1 cut(s)	1132
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	2 cut(s)	674, 895
BfaI	CTAG	6 cut(s)	300, 363, 521, 534, 1161, 1448
BfmI	CTRYAG	1 cut(s)	1646
BfuAI	ACCTGC	1 cut(s)	1732
BfuI	GTATCC	1 cut(s)	947
BlpI	GCTNAGC	1 cut(s)	1710
Bme1390I	CCNGG	4 cut(s)	161, 752, 966, 1368
Bme18I	GGWCC	3 cut(s)	227, 638, 1300
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	227, 638, 1300
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	4 cut(s)	161, 752, 966, 1368
BmsI	GCATC	7 cut(s)	196, 310, 413, 610, 1312, 1423, 1594
BoxI	GACNNNNGTC	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	4 cut(s)	850, 882, 875, 907
BpmI	CTGGAG	1 cut(s)	948
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	1710
BpuEI	CTTGAG	2 cut(s)	79, 1316
BpuMI	CCSGG	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	1659
BsaXI	ACNNNNNCTCC	2 cut(s)	1245, 1275
Bsc4I	CCNNNNNNNGG	7 cut(s)	237, 274, 545, 971, 1318, 1373, 1627
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	1021, 1035
Bse3DI	GCAATG	2 cut(s)	1125, 1581
BseBI	CCWGG	3 cut(s)	161, 966, 1368
BseDI	CCNNGG	1 cut(s)	1659
BseGI	GGATG	7 cut(s)	259, 404, 668, 892, 1153, 1327, 1609
BseLI	CCNNNNNNNGG	7 cut(s)	237, 274, 545, 971, 1318, 1373, 1627
BseMI	GCAATG	2 cut(s)	1125, 1581
BseMII	CTCAG	6 cut(s)	866, 873, 1014, 1206, 1218, 1700
BseNI	ACTGG	2 cut(s)	1021, 1035
BseRI	GAGGAG	1 cut(s)	983
BseYI	CCCAGC	2 cut(s)	584, 1621
BsgI	GTGCAG	3 cut(s)	360, 1484, 1722
BshFI	GGCC	3 cut(s)	216, 538, 1088
BsiHKAI	GWGCWC	1 cut(s)	1645
BsiSI	CCGG	2 cut(s)	186, 752
BslFI	GGGAC	2 cut(s)	213, 1391
BslI	CCNNNNNNNGG	7 cut(s)	237, 274, 545, 971, 1318, 1373, 1627
BsmAI	GTCTC	2 cut(s)	674, 895
BsmFI	GGGAC	2 cut(s)	213, 1391
BsmI	GAATGC	3 cut(s)	784, 1336, 1657
BsnI	GGCC	3 cut(s)	216, 538, 1088
Bsp1286I	GDGCHC	1 cut(s)	1645
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	1039, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1710
BspACI	CCGC	2 cut(s)	118, 1374
BspANI	GGCC	3 cut(s)	216, 538, 1088
BspCNI	CTCAG	6 cut(s)	865, 874, 1015, 1207, 1219, 1699
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	1650
BspMI	ACCTGC	1 cut(s)	1732
BsrDI	GCAATG	2 cut(s)	1125, 1581
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	1021, 1035
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	1659
BssMI	GATC	2 cut(s)	1039, 1132
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	161, 966, 1368
Bst4CI	ACNGT	7 cut(s)	263, 499, 647, 688, 1069, 1304, 1753
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	4 cut(s)	174, 183, 187, 201
BstDEI	CTNAG	8 cut(s)	852, 882, 1023, 1215, 1227, 1597, 1686, 1710
BstF5I	GGATG	7 cut(s)	259, 404, 668, 892, 1153, 1327, 1609
BstKTI	GATC	2 cut(s)	1042, 1135
BstMAI	GTCTC	2 cut(s)	674, 895
BstMBI	GATC	2 cut(s)	1039, 1132
BstNI	CCWGG	3 cut(s)	161, 966, 1368
BstNSI	RCATGY	2 cut(s)	532, 1404
BstPAI	GACNNNNGTC	1 cut(s)	686
BstSCI	CCNGG	4 cut(s)	159, 750, 964, 1366
BstSFI	CTRYAG	1 cut(s)	1646
BstV2I	GAAGAC	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	947
BsuRI	GGCC	3 cut(s)	216, 538, 1088
BtsCI	GGATG	7 cut(s)	259, 404, 668, 892, 1153, 1327, 1609
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 1042
BveI	ACCTGC	1 cut(s)	1732
Cac8I	GCNNGC	4 cut(s)	174, 183, 187, 201
CaiI	CAGNNNCTG	1 cut(s)	1202
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	227, 638, 1300
Csp6I	GTAC	3 cut(s)	259, 500, 1388
CviAII	CATG	2 cut(s)	529, 1401
CviQI	GTAC	3 cut(s)	259, 500, 1388
DdeI	CTNAG	8 cut(s)	852, 882, 1023, 1215, 1227, 1597, 1686, 1710
DpnI	GATC	2 cut(s)	1041, 1134
DpnII	GATC	2 cut(s)	1039, 1132
DriI	GACNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	1086
Eam1105I	GACNNNNNGTC	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	227, 638, 1300
EcoRII	CCWGG	3 cut(s)	159, 964, 1366
FaeI	CATG	2 cut(s)	532, 1404
FaqI	GGGAC	2 cut(s)	213, 1391
FatI	CATG	2 cut(s)	528, 1400
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	1048
FokI	GGATG	7 cut(s)	266, 391, 655, 899, 1160, 1334, 1616
FspBI	CTAG	6 cut(s)	300, 363, 521, 534, 1161, 1448
GsaI	CCCAGC	2 cut(s)	588, 1625
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	3 cut(s)	216, 538, 1088
HapII	CCGG	2 cut(s)	186, 752
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	532, 1404
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	3 cut(s)	197, 431, 1137
HinfI	GANTC	8 cut(s)	164, 377, 662, 786, 910, 1112, 1199, 1211
HpaII	CCGG	2 cut(s)	186, 752
HphI	GGTGA	9 cut(s)	13, 289, 398, 442, 986, 1108, 1473, 1532, 1713
Hpy166II	GTNNAC	3 cut(s)	514, 922, 1049
Hpy188I	TCNGA	2 cut(s)	1192, 1216
Hpy188III	TCNNGA	4 cut(s)	551, 790, 1105, 1678
Hpy8I	GTNNAC	3 cut(s)	514, 922, 1049
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	7 cut(s)	475, 695, 1102, 1349, 1462, 1511, 1699
HpyCH4III	ACNGT	7 cut(s)	263, 499, 647, 688, 1069, 1304, 1753
HpyF3I	CTNAG	8 cut(s)	852, 882, 1023, 1215, 1227, 1597, 1686, 1710
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	532, 1404
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	1132
Kzo9I	GATC	2 cut(s)	1039, 1132
LmnI	GCTCC	2 cut(s)	967, 1314
LweI	GCATC	7 cut(s)	196, 310, 413, 610, 1312, 1423, 1594
MaeI	CTAG	6 cut(s)	300, 363, 521, 534, 1161, 1448
MaeIII	GTNAC	7 cut(s)	289, 386, 448, 742, 1096, 1630, 1719
MalI	GATC	2 cut(s)	1041, 1134
MboI	GATC	2 cut(s)	1039, 1132
MboII	GAAGA	3 cut(s)	657, 817, 1442
MfeI	CAATTG	2 cut(s)	294, 1172
MhlI	GDGCHC	1 cut(s)	1645
MlsI	TGGCCA	1 cut(s)	1088
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	6 cut(s)	173, 671, 795, 904, 1106, 1205
MmeI	TCCRAC	2 cut(s)	231, 616
Mox20I	TGGCCA	1 cut(s)	1088
MroNI	GCCGGC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	4 cut(s)	477, 543, 561, 942
Msp20I	TGGCCA	1 cut(s)	1088
MspI	CCGG	2 cut(s)	186, 752
MspR9I	CCNGG	4 cut(s)	161, 752, 966, 1368
MunI	CAATTG	2 cut(s)	294, 1172
Mva1269I	GAATGC	3 cut(s)	784, 1336, 1657
MvaI	CCWGG	3 cut(s)	161, 966, 1368
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	2 cut(s)	1039, 1132
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	532, 1404
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	5 cut(s)	386, 448, 1096, 1630, 1719
NspI	RCATGY	2 cut(s)	532, 1404
PaqCI	CACCTGC	1 cut(s)	1732
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	2 cut(s)	528, 1400
PctI	GAATGC	3 cut(s)	784, 1336, 1657
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	377, 1199
PflMI	CCANNNNNTGG	1 cut(s)	971
PleI	GAGTC	6 cut(s)	172, 670, 794, 904, 1106, 1205
PpsI	GAGTC	6 cut(s)	172, 670, 794, 904, 1106, 1205
PscI	ACATGT	2 cut(s)	528, 1400
PshAI	GACNNNNGTC	1 cut(s)	686
PsiI	TTATAA	1 cut(s)	1265
Psp6I	CCWGG	3 cut(s)	159, 964, 1366
PspFI	CCCAGC	2 cut(s)	584, 1621
PspGI	CCWGG	3 cut(s)	159, 964, 1366
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	227, 638, 1300
PstI	CTGCAG	1 cut(s)	1650
PstNI	CAGNNNCTG	1 cut(s)	1202
RsaI	GTAC	3 cut(s)	260, 501, 1389
RsaNI	GTAC	3 cut(s)	259, 500, 1388
SaqAI	TTAA	4 cut(s)	477, 543, 561, 942
Sau3AI	GATC	2 cut(s)	1039, 1132
Sau96I	GGNCC	3 cut(s)	227, 638, 1300
SchI	GAGTC	6 cut(s)	173, 671, 795, 904, 1106, 1205
ScrFI	CCNGG	4 cut(s)	161, 752, 966, 1368
SduI	GDGCHC	1 cut(s)	1645
SfaNI	GCATC	7 cut(s)	196, 310, 413, 610, 1312, 1423, 1594
SfcI	CTRYAG	1 cut(s)	1646
SinI	GGWCC	3 cut(s)	227, 638, 1300
SmlI	CTYRAG	2 cut(s)	58, 1295
SmoI	CTYRAG	2 cut(s)	58, 1295
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	118, 1374
SspMI	CTAG	6 cut(s)	300, 363, 521, 534, 1161, 1448
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	4 cut(s)	159, 750, 964, 1366
TaaI	ACNGT	7 cut(s)	263, 499, 647, 688, 1069, 1304, 1753
TaqI	TCGA	6 cut(s)	110, 167, 627, 690, 1106, 1617
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	377, 1199
Tru1I	TTAA	4 cut(s)	477, 543, 561, 942
Tru9I	TTAA	4 cut(s)	477, 543, 561, 942
TscAI	CASTG	2 cut(s)	142, 1042
TseFI	GTSAC	5 cut(s)	386, 448, 1096, 1630, 1719
Tsp45I	GTSAC	5 cut(s)	386, 448, 1096, 1630, 1719
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	1301
TspRI	CASTG	2 cut(s)	142, 1042
Van91I	CCANNNNNTGG	1 cut(s)	971
VpaK11BI	GGWCC	3 cut(s)	227, 638, 1300
XceI	RCATGY	2 cut(s)	532, 1404
XmiI	GTMKAC	1 cut(s)	1048
XspI	CTAG	6 cut(s)	300, 363, 521, 534, 1161, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.