Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016669

Physical Location & Seq

Genomic Coordinates Forward (+)

13161158 .. 13164719

Gene Structure 3562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1141000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGCGTCGGCCAACGCTCTTACTTCTGCTTCCGTCCTCTGCTCTCCCAAACAGAGTTTGAGAAGGGGGGTGAATCAGCAGCAAAACAATAGGGTGAATTACAGGCAATCAAGGGGTCGCTTTGTTGTGAAGTCCTCTGCAAAAGAAATTGCTTTTGACCAGCATTCAAGGCGTGCGCTACAGGCCGGAATTGATAAGCTTGCGGACGCTGTTGGCCTTACTCTTGGTCCAAGGGGGAGGAATGTTGTATTGGATGAGTATGGTAGTCCTAAAGTTGTCAATGATGGAGTCACTATTGCTAGAGCTATTGAGTTACCTGATGCGATGGAAAATGCTGGTGCAGCCCTAATTAGAGAGGTTGCTAGCAAGACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAATTCTTGCACGGGAGATAATCAAGCTAGGGCTCTTGAGTGTGACCTCTGGTGCAAATCCTGTTTCGATAAAGAAGGGTATTGAGAAAACGGTACAAGGGCTGGTGGAGGAGCTAGAGAATAAGTCTAGGCCTGTTAAGGGTCGTGATGACGTTAAAGCTGTCGCAACTATTTCTGCTGGAAACGATGAGCAAATTGGGACAATGATTGCTGATGCTATTGACAAGGTTGGACCTGATGGTGTCCTGTCGATTGAGTCATCCTCCTCATTTGAGACTACCGTCGAGGTAGAAGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAATTTGTTACAAACCCTGAGAAATTGGTTGTTGAATTCGAGAATGCAAGAGTTTTGGTTACTGACCAGAAGATTTCAGCTATCAAGGACATAATTCCATTGTTGGAGAAGACCACTCAGTTGAGAGCCCCTCTGCTTATAATTGCTGAGGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTGAACAAGTTGAGGGGTATACTGAATGTTGCCGCTATCAAAGCTCCTGGTTTTGGTGAACGGAGAAAGGCTCTCCTCCAAGATATTGCCATTTTGACAGGGGCTGAGTTTCAAGCCAGTGACCTGAGTCTACTGGTTGAGAACACCTCAGTTGAGCAGCTTGGTTTGGCCCGAAAGGTGACAATCTCAAAGGACTCCACTACCATTATTGCTGATGCAGCATCAAAAGATGAGTTGCAAGCCAGAATTGCACAGCTGAAGAAAGAGCTGTCTGAGACAGATTCTGTTTATGACTCGGAAAAACTGGCTGAGAGGATTGCCAAATTATCAGGTGGAGTTGCTGTTATAAAGGTCGGTGCTGCTACAGAAACTGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCTACTTTTGCTGCCATAGAGGAAGGGATTGTGCCTGGTGGTGGTGCTGCTTTGGTGCATCTCTCAGCATATGTTCCTGCCATCAAGGAAAAACTTATCGATGCAGATGAGCGGCTAGGTGCTGACATTGTCCAGAAGGCACTGGTAGCACCAGCAGCATTGATAGCTCAAAACGCAGGAATTGAAGGCGAAGTGGTGGTGGAGAAAATAAGGGATAGTGAATGGGAGGTTGGTTACAATGCAATGACAGACAAGTACGAGAACTTGGTGGATGCCGGTGTTATCGACCCAGCAAAGGTAACAAGATGTGCTTTGCAGAACGCAGCTTCGGTTGCCGGAATGGTCTTGACCACTCAGGCCATTGTGGTGGAAAAGGCCAAGCCCAAGTCGGCCGCAGCAGCTGCCCCACAAGGCATGACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

586

Amino Acids

61.85

Weight (kDa)

5.15

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	67 - 569	5.2e-77	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28000
fragaria_vesca	FvH4_3g31450
malus_domestica	MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica	Prupe.6G106800_v2.0.a1
pyrus_communis	pycom11g11710
rosa_chinensis	RchiOBHm_Chr5g0058151
rosa_laevigata	RLG00000035195
rosa_multiflora	Rmu_sc0000367.1_g000017
rosa_roxburghii	Rroxscaffold_1G00022440
rosa_rugosa	Rorug05G0311700
rosa_samantha	Rh5AG380000 Rh5CG414900
rosa_wichuraiana	Rw5G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	875, 1265
AccBSI	CCGCTC	1 cut(s)	1444
AccI	GTMKAC	2 cut(s)	937, 1048
AciI	CCGC	4 cut(s)	203, 951, 1444, 1725
AcoI	YGGCCR	2 cut(s)	9, 1722
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	1 cut(s)	1196
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	501, 1589
AfiI	CCNNNNNNNGG	5 cut(s)	545, 971, 1318, 1373, 1627
AgsI	TTSAA	4 cut(s)	168, 770, 1031, 1517
AjnI	CCWGG	2 cut(s)	964, 1366
AjuI	GAANNNNNNNTTGG	4 cut(s)	233, 265, 1545, 1577
Alw26I	GTCTC	3 cut(s)	674, 895, 1187
AlwNI	CAGNNNCTG	4 cut(s)	1022, 1202, 1289, 1733
AoxI	GGCC	8 cut(s)	9, 183, 214, 536, 1086, 1689, 1707, 1722
ApoI	RAATTY	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	4 cut(s)	227, 638, 1087, 1300
AsuHPI	GGTGA	5 cut(s)	82, 106, 398, 986, 1108
AsuNHI	GCTAGC	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	227, 638, 1300
BanII	GRGCYC	2 cut(s)	441, 865
BbsI	GAAGAC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	882
BccI	CCATC	5 cut(s)	278, 319, 383, 638, 1421
BciT130I	CCWGG	2 cut(s)	966, 1368
BcoDI	GTCTC	3 cut(s)	674, 895, 1187
BfaI	CTAG	6 cut(s)	300, 363, 434, 521, 534, 1448
BfmI	CTRYAG	2 cut(s)	179, 1281
Bme1390I	CCNGG	2 cut(s)	966, 1368
Bme18I	GGWCC	3 cut(s)	227, 638, 1300
BmgT120I	GGNCC	4 cut(s)	227, 638, 1087, 1300
BmrFI	CCNGG	2 cut(s)	966, 1368
BmsI	GCATC	9 cut(s)	310, 413, 610, 1123, 1148, 1312, 1399, 1423, 1594
BmtI	GCTAGC	1 cut(s)	366
BoxI	GACNNNNGTC	2 cut(s)	686, 1044
BpiI	GAAGAC	1 cut(s)	851
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	463, 1316
Bsa29I	ATCGAT	1 cut(s)	1431
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	1245, 1275
Bsc4I	CCNNNNNNNGG	5 cut(s)	545, 971, 1318, 1373, 1627
Bse118I	RCCGGY	1 cut(s)	1607
Bse1I	ACTGG	4 cut(s)	1035, 1056, 1227, 1479
Bse3DI	GCAATG	1 cut(s)	1581
BseBI	CCWGG	2 cut(s)	966, 1368
BseCI	ATCGAT	1 cut(s)	1431
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	5 cut(s)	259, 665, 892, 1327, 1609
BseLI	CCNNNNNNNGG	5 cut(s)	545, 971, 1318, 1373, 1627
BseMI	GCAATG	1 cut(s)	1581
BseNI	ACTGG	4 cut(s)	1035, 1056, 1227, 1479
BseRI	GAGGAG	3 cut(s)	530, 661, 983
BseX3I	CGGCCG	1 cut(s)	1722
BseYI	CCCAGC	1 cut(s)	1621
BsgI	GTGCAG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	1725
BshFI	GGCC	8 cut(s)	11, 185, 216, 538, 1088, 1691, 1709, 1724
BshVI	ATCGAT	1 cut(s)	1431
BsiEI	CGRYCG	1 cut(s)	1725
BsiSI	CCGG	3 cut(s)	186, 1608, 1668
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	5 cut(s)	545, 971, 1318, 1373, 1627
BsmAI	GTCTC	3 cut(s)	674, 895, 1187
BsmFI	GGGAC	1 cut(s)	619
BsmI	GAATGC	3 cut(s)	163, 784, 1336
BsnI	GGCC	8 cut(s)	11, 185, 216, 538, 1088, 1691, 1709, 1724
Bsp1286I	GDGCHC	2 cut(s)	441, 865
BspACI	CCGC	4 cut(s)	203, 951, 1444, 1725
BspANI	GGCC	8 cut(s)	11, 185, 216, 538, 1088, 1691, 1709, 1724
BspDI	ATCGAT	1 cut(s)	1431
BspOI	GCTAGC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	1444
BsrDI	GCAATG	1 cut(s)	1581
BsrFI	RCCGGY	1 cut(s)	1607
BsrI	ACTGG	4 cut(s)	1035, 1056, 1227, 1479
BssAI	RCCGGY	1 cut(s)	1607
BssECI	CCNNGG	1 cut(s)	230
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	230
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	2 cut(s)	966, 1368
Bst4CI	ACNGT	4 cut(s)	499, 688, 1304, 1753
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1733
BstC8I	GCNNGC	4 cut(s)	174, 201, 364, 1158
BstF5I	GGATG	5 cut(s)	259, 665, 892, 1327, 1609
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	3 cut(s)	674, 895, 1187
BstMCI	CGRYCG	1 cut(s)	1725
BstNI	CCWGG	2 cut(s)	966, 1368
BstPAI	GACNNNNGTC	2 cut(s)	686, 1044
BstSCI	CCNGG	2 cut(s)	964, 1366
BstSFI	CTRYAG	2 cut(s)	179, 1281
BstV2I	GAAGAC	1 cut(s)	851
BstXI	CCANNNNNNTGG	1 cut(s)	1699
BstZ17I	GTATAC	1 cut(s)	938
BstZI	CGGCCG	1 cut(s)	1722
Bsu15I	ATCGAT	1 cut(s)	1431
BsuRI	GGCC	8 cut(s)	11, 185, 216, 538, 1088, 1691, 1709, 1724
BsuTUI	ATCGAT	1 cut(s)	1431
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	5 cut(s)	259, 665, 892, 1327, 1609
BtsIMutI	CAGTG	2 cut(s)	1042, 1472
Cac8I	GCNNGC	4 cut(s)	174, 201, 364, 1158
CaiI	CAGNNNCTG	4 cut(s)	1022, 1202, 1289, 1733
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	1607
Cfr13I	GGNCC	4 cut(s)	227, 638, 1087, 1300
ClaI	ATCGAT	1 cut(s)	1431
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	500, 1588
CviAII	CATG	1 cut(s)	1747
CviQI	GTAC	2 cut(s)	500, 1588
EaeI	YGGCCR	2 cut(s)	9, 1722
EagI	CGGCCG	1 cut(s)	1722
EclXI	CGGCCG	1 cut(s)	1722
Eco130I	CCWWGG	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	2 cut(s)	441, 865
Eco47I	GGWCC	3 cut(s)	227, 638, 1300
Eco52I	CGGCCG	1 cut(s)	1722
Eco57I	CTGAAG	1 cut(s)	1196
EcoRI	GAATTC	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	964, 1366
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	2 cut(s)	441, 865
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	1750
FalI	AAGNNNNNCTT	2 cut(s)	1627, 1659
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	1 cut(s)	1746
FauNDI	CATATG	1 cut(s)	1402
FblI	GTMKAC	2 cut(s)	937, 1048
FokI	GGATG	5 cut(s)	266, 652, 899, 1334, 1616
FriOI	GRGCYC	2 cut(s)	441, 865
FspBI	CTAG	6 cut(s)	300, 363, 434, 521, 534, 1448
GlaI	GCGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	1625
HaeIII	GGCC	8 cut(s)	11, 185, 216, 538, 1088, 1691, 1709, 1724
HapII	CCGG	3 cut(s)	186, 1608, 1668
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	1750
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	9 cut(s)	73, 288, 377, 662, 910, 1045, 1112, 1199, 1211
HpaII	CCGG	3 cut(s)	186, 1608, 1668
HphI	GGTGA	5 cut(s)	82, 106, 398, 986, 1108
Hpy166II	GTNNAC	4 cut(s)	922, 938, 977, 1049
Hpy188I	TCNGA	2 cut(s)	1192, 1216
Hpy188III	TCNNGA	5 cut(s)	442, 551, 775, 1465, 1678
Hpy8I	GTNNAC	4 cut(s)	922, 938, 977, 1049
Hpy99I	CGWCG	2 cut(s)	10, 692
HpyAV	CCTTC	6 cut(s)	57, 475, 695, 1349, 1462, 1511
HpyCH4III	ACNGT	4 cut(s)	499, 688, 1304, 1753
HpyCH4IV	ACGT	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	1750
HspAI	GCGC	1 cut(s)	176
LmnI	GCTCC	3 cut(s)	517, 967, 1314
LweI	GCATC	9 cut(s)	310, 413, 610, 1123, 1148, 1312, 1399, 1423, 1594
MaeI	CTAG	6 cut(s)	300, 363, 434, 521, 534, 1448
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	9 cut(s)	289, 312, 448, 742, 793, 1037, 1096, 1565, 1630
MbiI	CCGCTC	1 cut(s)	1444
MboII	GAAGA	4 cut(s)	710, 817, 856, 1189
MhlI	GDGCHC	2 cut(s)	441, 865
MlyI	GAGTC	7 cut(s)	297, 371, 671, 904, 1054, 1106, 1205
MmeI	TCCRAC	2 cut(s)	616, 819
MseI	TTAA	2 cut(s)	543, 561
MslI	CAYNNNNRTG	2 cut(s)	1697, 1751
MspA1I	CMGCKG	2 cut(s)	1174, 1733
MspI	CCGG	3 cut(s)	186, 1608, 1668
MspR9I	CCNGG	2 cut(s)	966, 1368
Mva1269I	GAATGC	3 cut(s)	163, 784, 1336
MvaI	CCWGG	2 cut(s)	966, 1368
NdeI	CATATG	1 cut(s)	1402
NheI	GCTAGC	1 cut(s)	362
NlaIII	CATG	1 cut(s)	1750
NmuCI	GTSAC	4 cut(s)	289, 448, 1037, 1096
PceI	AGGCCT	1 cut(s)	538
PctI	GAATGC	3 cut(s)	163, 784, 1336
PfeI	GAWTC	2 cut(s)	73, 1199
PflFI	GACNNNGTC	1 cut(s)	1460
PleI	GAGTC	7 cut(s)	296, 371, 670, 904, 1053, 1106, 1205
PpsI	GAGTC	7 cut(s)	296, 371, 670, 904, 1053, 1106, 1205
PshAI	GACNNNNGTC	2 cut(s)	686, 1044
PsiI	TTATAA	2 cut(s)	875, 1265
Psp6I	CCWGG	2 cut(s)	964, 1366
PspFI	CCCAGC	1 cut(s)	1621
PspGI	CCWGG	2 cut(s)	964, 1366
PspPI	GGNCC	4 cut(s)	227, 638, 1087, 1300
PstNI	CAGNNNCTG	4 cut(s)	1022, 1202, 1289, 1733
PsyI	GACNNNGTC	1 cut(s)	1460
PvuII	CAGCTG	2 cut(s)	1174, 1733
RsaI	GTAC	2 cut(s)	501, 1589
RsaNI	GTAC	2 cut(s)	500, 1588
RseI	CAYNNNNRTG	2 cut(s)	1697, 1751
SaqAI	TTAA	2 cut(s)	543, 561
Sau96I	GGNCC	4 cut(s)	227, 638, 1087, 1300
SchI	GAGTC	7 cut(s)	297, 371, 671, 904, 1054, 1106, 1205
ScrFI	CCNGG	2 cut(s)	966, 1368
SduI	GDGCHC	2 cut(s)	441, 865
SfaNI	GCATC	9 cut(s)	310, 413, 610, 1123, 1148, 1312, 1399, 1423, 1594
SfcI	CTRYAG	2 cut(s)	179, 1281
SinI	GGWCC	3 cut(s)	227, 638, 1300
SmiMI	CAYNNNNRTG	2 cut(s)	1697, 1751
SmlI	CTYRAG	2 cut(s)	442, 1295
SmoI	CTYRAG	2 cut(s)	442, 1295
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	4 cut(s)	203, 951, 1444, 1725
SspMI	CTAG	6 cut(s)	300, 363, 434, 521, 534, 1448
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	964, 1366
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	4 cut(s)	499, 688, 1304, 1753
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	6 cut(s)	473, 656, 690, 774, 1431, 1617
TauI	GCSGC	3 cut(s)	953, 1447, 1727
TfiI	GAWTC	2 cut(s)	73, 1199
Tru1I	TTAA	2 cut(s)	543, 561
Tru9I	TTAA	2 cut(s)	543, 561
TscAI	CASTG	2 cut(s)	1042, 1479
TseFI	GTSAC	4 cut(s)	289, 448, 1037, 1096
Tsp45I	GTSAC	4 cut(s)	289, 448, 1037, 1096
TspGWI	ACGGA	3 cut(s)	22, 994, 1301
TspRI	CASTG	2 cut(s)	1042, 1479
Tth111I	GACNNNGTC	1 cut(s)	1460
VpaK11BI	GGWCC	3 cut(s)	227, 638, 1300
XapI	RAATTY	1 cut(s)	770
XmiI	GTMKAC	2 cut(s)	937, 1048
XspI	CTAG	6 cut(s)	300, 363, 434, 521, 534, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.