RchiOBHm_Chr5g0058151
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
62271242 .. 62275026
3785 bp
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UTR
Exon/CDS
Intron
PRQ33485

Sequence Viewer

Length: 1758 bp
ATGGCGTCTGCCAACGCTCTCACCTCTGCTTCCATTCTCTGCTCGCCCAGACAGAGCTTGAGTAGGAGGGTAAATCAGCAGCAAATCAACAGGCTGAATTACAAGCAGTCGAGGGGGCGGTTTGCTGTGAAAGCCGCTGCGAAAGACATAGCCTTCGACCAGCAGTCGAGGCGTGCTATGCAAGCCGGCATTGATAAGCTTGCTGATGCTGTTGGCCTTACTCTTGGTCCCAGAGGGAGGAATGTTGTGTTGGATGAGTACGGTAGCCCTAAAGTGGTGAATGATGGAGTGACAATTGCTAGAGCTATTGAGCTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTCATTAGGGAGGTTGCTAGTAAGACCAATGATTCTGCTGGTGACGGCACAACAACAGCATCCATTCTTGCACGTGAGATAATCAAGCTTGGGCTTTTGAGTGTCACCTCTGGTGCAAATCCGGTTTCAATTAAGAAGGGGATTGATAAAACTGTACAGGCATTGGTGGACGAACTAGAGAACAAGTCTAGGCCTGTTAAGGGTCGTGATGATGTTAAAGCTGTTGCATCTATTTCTGCTGGGAATGATGAGCAAATTGGAACAATGATTGCTGATGCTATCGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCATTTGAGACGACCGTCGAAGTGGAAGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAATTTGTTACAAACCCAGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGTCTTGATTACAGACCAGAAGATTTCAGCTATCAAGGACATAATTCCCCTGTTAGAAAAGACCACTCAATTGAGAAGCCCTCTGCTTATTATTGCTGAGGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATCCTTAATGTTGCTGCCATCAAAGCTCCAGGTTTTGGTGAGCGCAGAAAGGCTCTCCTCCAAGATATTGCCATTTTGACTGGTGCCGAGTTTCAAGCCAATGATCTTGGTCTACTGATTGAGAACACCACAGTTGAGCAGCTTGGTTTGGCCAGAAAGGTGACAATCTCGAAGGACTCCACTACCATCATTGCTGATCAAGCTTCAAAGGATGAGTTGCAATCCAGAATTGCACAATTGAAAAAGGAGTTGTCTGAAACAGATTCTGTATATGACACTGAGAAATTGGCTGAGAGGATTGCCAAACTATCTGGGGGAGTTGCTGTTATAAAGGTTGGTGCTGCTACTGAAACCGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCCACTTTTGCTGCCATAGAGGAAGGGATTGTTCCCGGTGGCGGTGCTGCATTGGTACATCTTTCAACATATGTCCCTGCAATCAAGGACAGACTTGAAGATGCAGATGAGAAGCTAGGCGCTGACATTGTGCAGAAGGCTCTGGTAGCACCAGCAGCATTGATAGCTCAAAATGCTGGAATTGAAGGTGAAGTGGTGGTGGAGAAACTAAAAGAGAGTGAATGGGAGGTCGGCTACAACGCAATGACAGACACATACGAGAACCTAGTGGATGCTGGTGTTATCGACCCAGCAAAGGTTACAAGATGTGCTCTGCAGAATGCTGCCTCAGTTGCAGGAATGGTCTTGACCACTCAGGCTATTGTGGTGGAGAAGGCTAAGCCCAAGTCACCTGCTGCTGCTGCTGCACAAGGACTTACTGTGTAA

Protein Analysis

585

Amino Acids

61.95

Weight (kDa)

5.02

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 67 - 569 1.6e-76 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28000
fragaria_vesca FvH4_3g31450
malus_domestica MD03G1124000.v1.1 MD11G1141000.v1.1
prunus_persica Prupe.6G106800_v2.0.a1
pyrus_communis pycom11g11710
rosa_chinensis RchiOBHm_Chr5g0058151
rosa_laevigata RLG00000035195
rosa_multiflora Rmu_sc0000367.1_g000017
rosa_roxburghii Rroxscaffold_1G00022440
rosa_rugosa Rorug05G0311700
rosa_samantha Rh5AG380000 Rh5CG414900
rosa_wichuraiana Rw5G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1265
AarI CACCTGC 1 cut(s) 1732
Acc36I ACCTGC 1 cut(s) 1732
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 971
AccI GTMKAC 1 cut(s) 1048
AciI CCGC 3 cut(s) 118, 135, 1374
AcoI YGGCCR 1 cut(s) 1086
AcvI CACGTG 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 260, 501, 1389
AfiI CCNNNNNNNGG 7 cut(s) 237, 274, 545, 971, 1318, 1373, 1627
AgsI TTSAA 7 cut(s) 474, 1031, 1143, 1177, 1398, 1430, 1517
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 964
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
Alw21I GWGCWC 1 cut(s) 1645
Alw26I GTCTC 2 cut(s) 674, 895
AlwNI CAGNNNCTG 1 cut(s) 1202
AoxI GGCC 3 cut(s) 214, 536, 1086
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspLEI GCGC 2 cut(s) 981, 1454
AspS9I GGNCC 3 cut(s) 227, 638, 1300
AsuC2I CCSGG 1 cut(s) 1368
AsuHPI GGTGA 8 cut(s) 13, 289, 398, 442, 986, 1108, 1532, 1713
AvaII GGWCC 3 cut(s) 227, 638, 1300
BalI TGGCCA 1 cut(s) 1088
BanI GGYRCC 1 cut(s) 1019
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 1645
BbvCI CCTCAGC 1 cut(s) 882
BccI CCATC 4 cut(s) 278, 638, 962, 1130
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 966
BciVI GTATCC 1 cut(s) 947
BclI TGATCA 1 cut(s) 1132
BcnI CCSGG 1 cut(s) 1368
BcoDI GTCTC 2 cut(s) 674, 895
BfaI CTAG 6 cut(s) 300, 363, 521, 534, 1448, 1598
BfmI CTRYAG 1 cut(s) 1646
BfoI RGCGCY 1 cut(s) 1455
BfuAI ACCTGC 1 cut(s) 1732
BfuI GTATCC 1 cut(s) 947
BlpI GCTNAGC 1 cut(s) 1710
Bme1390I CCNGG 2 cut(s) 966, 1368
Bme18I GGWCC 3 cut(s) 227, 638, 1300
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 227, 638, 1300
BmiI GGNNCC 2 cut(s) 229, 1021
BmrFI CCNGG 2 cut(s) 966, 1368
BmsI GCATC 8 cut(s) 196, 310, 413, 581, 610, 1312, 1423, 1594
BoxI GACNNNNGTC 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 657
BplI GAGNNNNNCTC 4 cut(s) 850, 882, 875, 907
BpmI CTGGAG 1 cut(s) 948
Bpu10I CCTNAGC 1 cut(s) 882
Bpu1102I GCTNAGC 1 cut(s) 1710
BpuEI CTTGAG 2 cut(s) 79, 1316
BpuMI CCSGG 1 cut(s) 1368
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 1245, 1275
Bsc4I CCNNNNNNNGG 7 cut(s) 237, 274, 545, 971, 1318, 1373, 1627
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 1021
Bse3DI GCAATG 2 cut(s) 1125, 1581
BseBI CCWGG 1 cut(s) 966
BseGI GGATG 7 cut(s) 259, 404, 668, 892, 1153, 1327, 1609
BseLI CCNNNNNNNGG 7 cut(s) 237, 274, 545, 971, 1318, 1373, 1627
BseMI GCAATG 2 cut(s) 1125, 1581
BseMII CTCAG 5 cut(s) 873, 1206, 1218, 1674, 1700
BseNI ACTGG 1 cut(s) 1021
BseRI GAGGAG 1 cut(s) 983
BseYI CCCAGC 2 cut(s) 584, 1621
BsgI GTGCAG 3 cut(s) 360, 1484, 1722
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 3 cut(s) 216, 538, 1088
BshNI GGYRCC 1 cut(s) 1019
BsiEI CGRYCG 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 1645
BsiSI CCGG 3 cut(s) 186, 467, 1368
BslFI GGGAC 2 cut(s) 213, 1391
BslI CCNNNNNNNGG 7 cut(s) 237, 274, 545, 971, 1318, 1373, 1627
BsmAI GTCTC 2 cut(s) 674, 895
BsmBI CGTCTC 1 cut(s) 674
BsmFI GGGAC 2 cut(s) 213, 1391
BsmI GAATGC 3 cut(s) 784, 1336, 1657
BsnI GGCC 3 cut(s) 216, 538, 1088
Bsp1286I GDGCHC 1 cut(s) 1645
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 2 cut(s) 1039, 1132
Bsp1720I GCTNAGC 1 cut(s) 1710
BspACI CCGC 3 cut(s) 118, 135, 1374
BspANI GGCC 3 cut(s) 216, 538, 1088
BspCNI CTCAG 5 cut(s) 874, 1207, 1219, 1673, 1699
BspLI GGNNCC 2 cut(s) 229, 1021
BspMAI CTGCAG 1 cut(s) 1650
BspMI ACCTGC 1 cut(s) 1732
BspT107I GGYRCC 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 1125, 1581
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 1 cut(s) 1021
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 1039, 1132
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 6 cut(s) 263, 499, 688, 1069, 1304, 1753
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 499
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 5 cut(s) 44, 174, 183, 187, 201
BstDEI CTNAG 6 cut(s) 882, 1215, 1227, 1660, 1686, 1710
BstF5I GGATG 7 cut(s) 259, 404, 668, 892, 1153, 1327, 1609
BstH2I RGCGCY 1 cut(s) 1455
BstHHI GCGC 2 cut(s) 981, 1454
BstKTI GATC 2 cut(s) 1042, 1135
BstMAI GTCTC 2 cut(s) 674, 895
BstMBI GATC 2 cut(s) 1039, 1132
BstMCI CGRYCG 1 cut(s) 687
BstNI CCWGG 1 cut(s) 966
BstPAI GACNNNNGTC 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 964, 1366
BstSFI CTRYAG 1 cut(s) 1646
BstV2I GAAGAC 1 cut(s) 657
BsuI GTATCC 1 cut(s) 947
BsuRI GGCC 3 cut(s) 216, 538, 1088
BtsCI GGATG 7 cut(s) 259, 404, 668, 892, 1153, 1327, 1609
BtsIMutI CAGTG 1 cut(s) 1212
BveI ACCTGC 1 cut(s) 1732
Cac8I GCNNGC 5 cut(s) 44, 174, 183, 187, 201
CaiI CAGNNNCTG 1 cut(s) 1202
CfoI GCGC 2 cut(s) 981, 1454
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 227, 638, 1300
Csp6I GTAC 3 cut(s) 259, 500, 1388
CviQI GTAC 3 cut(s) 259, 500, 1388
DdeI CTNAG 6 cut(s) 882, 1215, 1227, 1660, 1686, 1710
DpnI GATC 2 cut(s) 1041, 1134
DpnII GATC 2 cut(s) 1039, 1132
DriI GACNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 1086
Eam1105I GACNNNNNGTC 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 538
Eco47I GGWCC 3 cut(s) 227, 638, 1300
Eco72I CACGTG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 964
Esp3I CGTCTC 1 cut(s) 674
FaqI GGGAC 2 cut(s) 213, 1391
FauNDI CATATG 1 cut(s) 1402
FbaI TGATCA 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 1048
FokI GGATG 7 cut(s) 266, 391, 655, 899, 1160, 1334, 1616
FspBI CTAG 6 cut(s) 300, 363, 521, 534, 1448, 1598
GlaI GCGC 2 cut(s) 980, 1453
GsaI CCCAGC 2 cut(s) 588, 1625
GsuI CTGGAG 1 cut(s) 948
HaeII RGCGCY 1 cut(s) 1455
HaeIII GGCC 3 cut(s) 216, 538, 1088
HapII CCGG 3 cut(s) 186, 467, 1368
HhaI GCGC 2 cut(s) 981, 1454
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 2 cut(s) 979, 1452
HinP1I GCGC 2 cut(s) 979, 1452
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HindIII AAGCTT 3 cut(s) 197, 431, 1137
HinfI GANTC 6 cut(s) 377, 662, 786, 910, 1112, 1199
HpaII CCGG 3 cut(s) 186, 467, 1368
HphI GGTGA 8 cut(s) 13, 289, 398, 442, 986, 1108, 1532, 1713
Hpy166II GTNNAC 3 cut(s) 514, 922, 1049
Hpy188I TCNGA 1 cut(s) 1192
Hpy188III TCNNGA 5 cut(s) 551, 790, 1105, 1161, 1678
Hpy8I GTNNAC 3 cut(s) 514, 922, 1049
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 8 cut(s) 163, 475, 695, 1102, 1349, 1462, 1511, 1699
HpyCH4III ACNGT 6 cut(s) 263, 499, 688, 1069, 1304, 1753
HpyCH4IV ACGT 1 cut(s) 418
HpyF3I CTNAG 6 cut(s) 882, 1215, 1227, 1660, 1686, 1710
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 2 cut(s) 979, 1452
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 1132
Kzo9I GATC 2 cut(s) 1039, 1132
LmnI GCTCC 2 cut(s) 967, 1314
LweI GCATC 8 cut(s) 196, 310, 413, 581, 610, 1312, 1423, 1594
MaeI CTAG 6 cut(s) 300, 363, 521, 534, 1448, 1598
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 7 cut(s) 289, 386, 448, 742, 1096, 1630, 1719
MalI GATC 2 cut(s) 1041, 1134
MboI GATC 2 cut(s) 1039, 1132
MboII GAAGA 4 cut(s) 657, 710, 817, 1442
MfeI CAATTG 3 cut(s) 294, 854, 1172
MhlI GDGCHC 1 cut(s) 1645
MlsI TGGCCA 1 cut(s) 1088
MluNI TGGCCA 1 cut(s) 1088
MlyI GAGTC 4 cut(s) 671, 795, 904, 1106
MmeI TCCRAC 2 cut(s) 231, 616
Mox20I TGGCCA 1 cut(s) 1088
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 1088
MseI TTAA 4 cut(s) 477, 543, 561, 942
Msp20I TGGCCA 1 cut(s) 1088
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 186, 467, 1368
MspR9I CCNGG 2 cut(s) 966, 1368
MunI CAATTG 3 cut(s) 294, 854, 1172
Mva1269I GAATGC 3 cut(s) 784, 1336, 1657
MvaI CCWGG 1 cut(s) 966
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 1368
NdeI CATATG 1 cut(s) 1402
NdeII GATC 2 cut(s) 1039, 1132
NgoMIV GCCGGC 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 229, 1021
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 5 cut(s) 289, 386, 448, 1096, 1719
PaqCI CACCTGC 1 cut(s) 1732
PceI AGGCCT 1 cut(s) 538
PctI GAATGC 3 cut(s) 784, 1336, 1657
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 377, 1199
PflMI CCANNNNNTGG 1 cut(s) 971
PleI GAGTC 4 cut(s) 670, 794, 904, 1106
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 4 cut(s) 670, 794, 904, 1106
Ppu21I YACGTR 1 cut(s) 419
PshAI GACNNNNGTC 1 cut(s) 686
PsiI TTATAA 1 cut(s) 1265
Psp6I CCWGG 1 cut(s) 964
PspCI CACGTG 1 cut(s) 419
PspFI CCCAGC 2 cut(s) 584, 1621
PspGI CCWGG 1 cut(s) 964
PspN4I GGNNCC 2 cut(s) 229, 1021
PspPI GGNCC 3 cut(s) 227, 638, 1300
PstI CTGCAG 1 cut(s) 1650
PstNI CAGNNNCTG 1 cut(s) 1202
RsaI GTAC 3 cut(s) 260, 501, 1389
RsaNI GTAC 3 cut(s) 259, 500, 1388
SaqAI TTAA 4 cut(s) 477, 543, 561, 942
Sau3AI GATC 2 cut(s) 1039, 1132
Sau96I GGNCC 3 cut(s) 227, 638, 1300
SchI GAGTC 4 cut(s) 671, 795, 904, 1106
ScrFI CCNGG 2 cut(s) 966, 1368
SduI GDGCHC 1 cut(s) 1645
SfaNI GCATC 8 cut(s) 196, 310, 413, 581, 610, 1312, 1423, 1594
SfcI CTRYAG 1 cut(s) 1646
SinI GGWCC 3 cut(s) 227, 638, 1300
SmlI CTYRAG 2 cut(s) 58, 1295
SmoI CTYRAG 2 cut(s) 58, 1295
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 3 cut(s) 118, 135, 1374
SspMI CTAG 6 cut(s) 300, 363, 521, 534, 1448, 1598
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 2 cut(s) 964, 1366
TaaI ACNGT 6 cut(s) 263, 499, 688, 1069, 1304, 1753
TaiI ACGT 1 cut(s) 421
TaqI TCGA 7 cut(s) 110, 156, 167, 627, 690, 1106, 1617
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 377, 1199
Tru1I TTAA 4 cut(s) 477, 543, 561, 942
Tru9I TTAA 4 cut(s) 477, 543, 561, 942
TscAI CASTG 1 cut(s) 1219
TseFI GTSAC 5 cut(s) 289, 386, 448, 1096, 1719
Tsp45I GTSAC 5 cut(s) 289, 386, 448, 1096, 1719
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 1 cut(s) 1301
TspRI CASTG 1 cut(s) 1219
Van91I CCANNNNNTGG 1 cut(s) 971
VpaK11BI GGWCC 3 cut(s) 227, 638, 1300
XmiI GTMKAC 1 cut(s) 1048
XspI CTAG 6 cut(s) 300, 363, 521, 534, 1448, 1598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.