AT2G29660

zinc finger (C2H2 type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013422
Physical Location & Seq
Forward (+)
12678890 .. 12680737
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29660.1

Sequence Viewer

Length: 1122 bp
ATGGCGGCTCGAAAACTAGGGTCGTTGTTACGTCAATACTTTTTCTCTCTATGCTTCCTCTTCCTCGGTTGCTTCTTCTTCCCTAAAGACGCAGACTATAAACAAAAGAGAAGAAAGAAGAAGCTTAGAAGAGTTTCTTCTTCTTCTGGTTCATCTCTATCCTCTTCTTGGACGTATTTAAAACGAGTTTTCTTATCCACGACAAGGATATCCAAATCCCGTAACCAAACACATCCTAACGTTACTTTAACATCCGCAAGATCATCTCAAAACTCCCTCGTCACTCTCGTCCAACCCGATACCACAAACCAACCCGACCCGGAAACACGTATTCATCAGCAAACCGAATTCGAGATCTCCTCTTCCGACGAGATTTTCCCTTGTAACTCGTGTGGCGAGATTTTCCCAAAAATCAATCTCCTCGAGAATCACATCGCGATCAAACACGCCGTGTCGGAGCTAATCGCCGGAGAATCAAGCACGAACATCGTCAAGATCATATTCAAATCTGGTTGGCCGGAGCAAGGTAATTACAAATCTCCGGTGATCAATCGAATCTTAAAAATCCACAACAGTTCAAAGATTCTCACCAGATTCGAAGAGTATCGTGAGTTCGTGAAAGCTAAAGCCGCTCGTAGCAACGGCGGTGGAAGACGGTGGGACGATGAACGTTGCGTCGCCGACGGAAACGAACTTTTACGATTTTACTGCTCGACGTTTATGTGTGATTTAGGGCAAAACGGTAAATCAAATCTCTGTGGTCATCAGTATTGTAGTATCTGTGGTATCATCGGATCTGGATTCTCGCCGAAGCTCGACGGGATCGCGACGTTGGCGACGGGGTGGAGAGGACACGTGGCGGTTCCGGAGGAGGTTGAAGAAGAGTTTGGGTTTATGAATGTGAAACGGGCCATGTTGGTTTGTCGGGTTGTAGCGGGTCGGGTCGGGTGTGATTTGATTGATGATGATGACGTGGATAAGAGTGATGGTGGAGGGTATGATTCTCTGGTTGGGCAGAGTGGGAACAAGAGTGGGGCTCTGTTGAGGATCGACGATGATGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTTCCTTGTTTTGTTATTGTGTATACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

41.6

Weight (kDa)

8.72

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 632
AccI GTMKAC 1 cut(s) 1112
AccII CGCG 2 cut(s) 437, 827
AccIII TCCGGA 1 cut(s) 865
AciI CCGC 6 cut(s) 5, 255, 630, 645, 860, 935
AclI AACGTT 2 cut(s) 240, 670
AclWI GGATC 3 cut(s) 802, 830, 1055
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 347
AcvI CACGTG 1 cut(s) 856
AdeI CACNNNGTG 1 cut(s) 451
AfiI CCNNNNNNNGG 3 cut(s) 168, 204, 524
AflIII ACRYGT 2 cut(s) 326, 853
AgsI TTSAA 3 cut(s) 505, 579, 878
AjiI CACGTC 1 cut(s) 973
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AluBI AGCT 5 cut(s) 124, 460, 623, 814, 1063
AluI AGCT 5 cut(s) 124, 460, 623, 814, 1063
AlwI GGATC 3 cut(s) 802, 830, 1055
Ama87I CYCGRG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 865
AoxI GGCC 2 cut(s) 515, 909
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 909
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 556, 580
AsuII TTCGAA 1 cut(s) 597
AvaI CYCGRG 1 cut(s) 422
BanII GRGCYC 1 cut(s) 1039
BauI CACGAG 1 cut(s) 388
BbrPI CACGTG 1 cut(s) 856
BbsI GAAGAC 1 cut(s) 658
BccI CCATC 1 cut(s) 980
BceAI ACGGC 2 cut(s) 434, 658
BcgI CGANNNNNNTGC 4 cut(s) 469, 503, 690, 724
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 320
BfaI CTAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 6, 630
BlsI GCNGC 2 cut(s) 7, 631
Bme1390I CCNGG 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 1 cut(s) 864
BmrFI CCNGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 658
BplI GAGNNNNNCTC 4 cut(s) 344, 376, 1021, 1053
Bpu14I TTCGAA 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 320
BsaAI YACGTR 2 cut(s) 329, 856
BsaJI CCNNGG 2 cut(s) 64, 1079
BsaWI WCCGGW 2 cut(s) 541, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 204, 524
BseAI TCCGGA 1 cut(s) 865
BseDI CCNNGG 2 cut(s) 64, 1079
BseGI GGATG 2 cut(s) 232, 251
BseLI CCNNNNNNNGG 3 cut(s) 168, 204, 524
BseRI GAGGAG 3 cut(s) 349, 410, 884
Bsh1236I CGCG 2 cut(s) 437, 827
BshFI GGCC 2 cut(s) 517, 911
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 5 cut(s) 320, 468, 518, 542, 866
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 168, 204, 524
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 2 cut(s) 517, 911
BsoBI CYCGRG 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 1039
Bsp13I TCCGGA 1 cut(s) 865
Bsp143I GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
Bsp68I TCGCGA 2 cut(s) 437, 827
BspACI CCGC 6 cut(s) 5, 255, 630, 645, 860, 935
BspANI GGCC 2 cut(s) 517, 911
BspEI TCCGGA 1 cut(s) 865
BspFNI CGCG 2 cut(s) 437, 827
BspLI GGNNCC 1 cut(s) 864
BspPI GGATC 3 cut(s) 802, 830, 1055
BspT104I TTCGAA 1 cut(s) 597
BsrBI CCGCTC 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 64, 1079
BssMI GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
BssNAI GTATAC 1 cut(s) 1113
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 1079
Bst1107I GTATAC 1 cut(s) 1113
Bst2BI CACGAG 1 cut(s) 388
Bst4CI ACNGT 4 cut(s) 575, 657, 743, 1117
Bst6I CTCTTC 6 cut(s) 65, 124, 169, 367, 594, 876
BstBAI YACGTR 2 cut(s) 329, 856
BstBI TTCGAA 1 cut(s) 597
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 232, 251
BstFNI CGCG 2 cut(s) 437, 827
BstKTI GATC 8 cut(s) 263, 357, 441, 498, 549, 797, 825, 1050
BstMBI GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 629, 833
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 2 cut(s) 437, 827
BstV2I GAAGAC 1 cut(s) 658
BstX2I RGATCY 2 cut(s) 354, 794
BstYI RGATCY 2 cut(s) 354, 794
BstZ17I GTATAC 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 517, 911
BtgZI GCGATG 1 cut(s) 418
BtrI CACGTC 1 cut(s) 973
BtsCI GGATG 2 cut(s) 232, 251
BtuMI TCGCGA 2 cut(s) 437, 827
Cfr13I GGNCC 1 cut(s) 909
CseI GACGC 2 cut(s) 98, 664
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 1 cut(s) 913
DdeI CTNAG 1 cut(s) 125
DpnI GATC 8 cut(s) 262, 356, 440, 497, 548, 796, 824, 1049
DpnII GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
DraI TTTAAA 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 6 cut(s) 65, 124, 169, 367, 594, 876
EarI CTCTTC 6 cut(s) 65, 124, 169, 367, 594, 876
Eco130I CCWWGG 1 cut(s) 1079
Eco24I GRGCYC 1 cut(s) 1039
Eco32I GATATC 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 347
EcoRV GATATC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 1079
EcoT38I GRGCYC 1 cut(s) 1039
ErhI CCWWGG 1 cut(s) 1079
FaeI CATG 1 cut(s) 916
FaiI YATR 8 cut(s) 52, 99, 500, 722, 896, 914, 999, 1113
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FaqI GGGAC 1 cut(s) 674
FatI CATG 1 cut(s) 912
FauI CCCGC 1 cut(s) 928
FbaI TGATCA 1 cut(s) 546
FblI GTMKAC 1 cut(s) 1112
Fnu4HI GCNGC 2 cut(s) 6, 630
FokI GGATG 2 cut(s) 219, 238
FriOI GRGCYC 1 cut(s) 1039
Fsp4HI GCNGC 2 cut(s) 6, 630
FspBI CTAG 1 cut(s) 17
GluI GCNGC 2 cut(s) 6, 630
HaeIII GGCC 2 cut(s) 517, 911
HapII CCGG 5 cut(s) 320, 468, 518, 542, 866
HgaI GACGC 2 cut(s) 98, 664
Hin1II CATG 1 cut(s) 916
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 7 cut(s) 427, 473, 555, 583, 594, 801, 1001
HpaII CCGG 5 cut(s) 320, 468, 518, 542, 866
HphI GGTGA 2 cut(s) 556, 580
Hpy166II GTNNAC 1 cut(s) 1113
Hpy188I TCNGA 3 cut(s) 367, 457, 794
Hpy188III TCNNGA 9 cut(s) 352, 424, 436, 493, 608, 616, 798, 826, 866
Hpy8I GTNNAC 1 cut(s) 1113
Hpy99I CGWCG 8 cut(s) 371, 680, 686, 718, 821, 832, 841, 1055
HpyCH4III ACNGT 4 cut(s) 575, 657, 743, 1117
HpyCH4IV ACGT 9 cut(s) 31, 173, 240, 328, 670, 716, 830, 855, 972
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 833
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 9 cut(s) 31, 173, 240, 328, 670, 716, 830, 855, 972
Hsp92II CATG 1 cut(s) 916
Kpn2I TCCGGA 1 cut(s) 865
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
LmnI GCTCC 2 cut(s) 457, 520
MaeI CTAG 1 cut(s) 17
MaeII ACGT 9 cut(s) 31, 173, 240, 328, 670, 716, 830, 855, 972
MaeIII GTNAC 5 cut(s) 27, 221, 241, 280, 383
MalI GATC 8 cut(s) 262, 356, 440, 497, 548, 796, 824, 1049
MbiI CCGCTC 1 cut(s) 632
MboI GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
MflI RGATCY 2 cut(s) 354, 794
MhlI GDGCHC 1 cut(s) 1039
MluCI AATT 2 cut(s) 347, 529
MmeI TCCRAC 3 cut(s) 316, 390, 435
MroI TCCGGA 1 cut(s) 865
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 4 cut(s) 179, 248, 560, 1074
MspI CCGG 5 cut(s) 320, 468, 518, 542, 866
MspR9I CCNGG 1 cut(s) 320
MvnI CGCG 2 cut(s) 437, 827
MwoI GCNNNNNNNGC 2 cut(s) 629, 833
NciI CCSGG 1 cut(s) 320
NdeII GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
NlaIII CATG 1 cut(s) 916
NlaIV GGNNCC 1 cut(s) 864
NmuCI GTSAC 1 cut(s) 280
NruI TCGCGA 2 cut(s) 437, 827
NspV TTCGAA 1 cut(s) 597
PaeR7I CTCGAG 1 cut(s) 422
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 294
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 7 cut(s) 427, 473, 555, 583, 594, 801, 1001
PkrI GCNGC 2 cut(s) 7, 631
PmaCI CACGTG 1 cut(s) 856
PmlI CACGTG 1 cut(s) 856
Ppu21I YACGTR 2 cut(s) 329, 856
Psp1406I AACGTT 2 cut(s) 240, 670
PspCI CACGTG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 909
PsrI GAACNNNNNNTAC 2 cut(s) 596, 628
PsuI RGATCY 2 cut(s) 354, 794
RruI TCGCGA 2 cut(s) 437, 827
SaqAI TTAA 4 cut(s) 179, 248, 560, 1074
SatI GCNGC 2 cut(s) 6, 630
Sau3AI GATC 8 cut(s) 260, 354, 438, 495, 546, 794, 822, 1047
Sau96I GGNCC 1 cut(s) 909
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 1039
Sfr274I CTCGAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 347, 529
SsiI CCGC 6 cut(s) 5, 255, 630, 645, 860, 935
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 1079
TaaI ACNGT 4 cut(s) 575, 657, 743, 1117
TaiI ACGT 9 cut(s) 34, 176, 243, 331, 673, 719, 833, 858, 975
TaqI TCGA 8 cut(s) 10, 351, 423, 553, 597, 713, 816, 1050
TasI AATT 2 cut(s) 347, 529
TauI GCSGC 2 cut(s) 8, 632
TfiI GAWTC 7 cut(s) 427, 473, 555, 583, 594, 801, 1001
Tru1I TTAA 4 cut(s) 179, 248, 560, 1074
Tru9I TTAA 4 cut(s) 179, 248, 560, 1074
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 141, 323, 681, 911
TspGWI ACGGA 1 cut(s) 699
XapI RAATTY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 1112
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.