Rh5DG482600

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013422
Physical Location & Seq
Forward (+)
76020052 .. 76022386
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG482600.1

Sequence Viewer

Length: 1110 bp
ATGGCAACCATATCATCATTCTTCAACAGGTTCCTCTCTTTCTTCCTCCTTCTCTTCCACCTCAGCTGCTTCACTATCACCCCCACCGCCGCCGCCGCCGCCGCCTCCACCACCAATCCCCACCGCCATAAACGCAGACTCACTTCATTCCTCTCCAAACCCTCTCTAAAACCCCAAAAGGCTCTTTCCTCCTCTTGGTCCTTTCTCAAGAAAGTCTTCAAGTCCTCCAAAACCCAAACCCACCACCTCTCCACGCCGCCTCGCTCCTCCAGCCACTCCCTCGTCTCCCTCGTCCTCCCCGCCCAAATCAAATCAGACCCTCCGCCCAAAAACTCCGATGACTCTGATATCTTCTCCGGCGATCACCACTTTTTCCCTCTTCGAAACGACATCTTCCCCTGCACAACTTGCGGCGAGATTTTCCATAAACCTCAGGCTCTCGACCACCACCAAGCAGTCAAGCACGCCGTGTCGGAGCTCCACAACGGCGACACCGGTAAGAACATAGTCCAGATCATATTCAAAACAGGCTGGACCGACACCCAGAAAAGCCCAGTGATCCACCGCATTCTAAAGATCCACAACAGCGTCAAGATACTTGCCAGGTTCGAAGAGTACAGAGAGTTAGTGAAGTCCAAAGCAGCGAGAAACGGCGCTGTTGGAAGAGACGAAAGGTGCGTAGCTGATGGGAACGAGCTGCTGAGATTTCACTGCTCGACTTTTCTCTGCGACTTGGGAGTCGGCGGGAGCTCCGGGATTTGCAACCAGCAGTATTGCAGCGTTTGCGGGATTATCAAGTCAGGGTTCTCACCCAAGTTGGACGGAATCTCCACGCTGTCGAGCAGCTCCAGGGCACACGTGGCCATCCCGGAAGAGATCGAGGAGGAGTTCAAGTTCATGAACGTGAAGCGGGCCATGCTGGTCTGCCGCGTCGTGGCGGGTCGGGTCGGGTGCGACTCTGATGATGACGTGGACAAGGAGGGTGGCGGGTTTGAATCGGTGGTGGGGAGGAGTGGGAGTGGGACCCAGATGAGGGTGGATGAGGAGGAGCTCTTGGTCTTTAACCCGAGGGCTGTGCTTCCCTGCTTTGTGATTGTGTATACCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

40.71

Weight (kDa)

8.87

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
AccI GTMKAC 1 cut(s) 1100
AccII CGCG 1 cut(s) 930
AclWI GGATC 2 cut(s) 553, 571
AcoI YGGCCR 1 cut(s) 861
AcvI CACGTG 1 cut(s) 859
AdeI CACNNNGTG 1 cut(s) 469
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 4 cut(s) 195, 934, 1032, 1033
AflIII ACRYGT 1 cut(s) 856
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 5 cut(s) 25, 220, 523, 892, 995
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 2 cut(s) 602, 848
AloI GAACNNNNNNTCC 2 cut(s) 878, 910
AluBI AGCT 7 cut(s) 66, 478, 683, 697, 750, 846, 1051
AluI AGCT 7 cut(s) 66, 478, 683, 697, 750, 846, 1051
Alw21I GWGCWC 3 cut(s) 480, 752, 1053
Alw26I GTCTC 2 cut(s) 289, 660
AlwI GGATC 2 cut(s) 553, 571
Ama87I CYCGRG 1 cut(s) 1066
AoxI GGCC 2 cut(s) 861, 912
ApeKI GCWGC 5 cut(s) 66, 641, 697, 777, 843
AsiGI ACCGGT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 4 cut(s) 198, 534, 912, 1023
AsuC2I CCSGG 2 cut(s) 754, 869
AsuHPI GGTGA 3 cut(s) 70, 356, 801
AsuII TTCGAA 2 cut(s) 382, 609
AvaI CYCGRG 1 cut(s) 1066
AvaII GGWCC 3 cut(s) 198, 534, 1023
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 856
BalI TGGCCA 1 cut(s) 863
BanII GRGCYC 3 cut(s) 480, 752, 1053
BbrPI CACGTG 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 3 cut(s) 480, 752, 1053
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 5 cut(s) 53, 653, 684, 789, 855
BccI CCATC 2 cut(s) 680, 872
BceAI ACGGC 3 cut(s) 452, 502, 667
BcgI CGANNNNNNTGC 2 cut(s) 1057, 1091
BciT130I CCWGG 2 cut(s) 604, 850
BcnI CCSGG 2 cut(s) 754, 869
BcoDI GTCTC 2 cut(s) 289, 660
BfoI RGCGCY 1 cut(s) 657
Bme1390I CCNGG 4 cut(s) 604, 754, 850, 869
Bme18I GGWCC 3 cut(s) 198, 534, 1023
BmeT110I CYCGRG 1 cut(s) 1066
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 4 cut(s) 198, 534, 912, 1023
BmiI GGNNCC 3 cut(s) 32, 1024, 1025
BmrFI CCNGG 4 cut(s) 604, 754, 850, 869
BmrI ACTGGG 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 253, 832
Bpu10I CCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 2 cut(s) 382, 609
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 754, 869
BsaAI YACGTR 1 cut(s) 859
BsaJI CCNNGG 2 cut(s) 849, 1067
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 8 cut(s) 233, 263, 812, 842, 878, 908, 1003, 1033
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 934, 1032, 1033
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 554
Bse21I CCTNAGG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 604, 850
BseDI CCNNGG 2 cut(s) 849, 1067
BseGI GGATG 2 cut(s) 864, 1045
BseLI CCNNNNNNNGG 4 cut(s) 195, 934, 1032, 1033
BseMII CTCAG 3 cut(s) 76, 446, 692
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 7 cut(s) 181, 256, 896, 899, 1024, 1058, 1061
BseSI GKGCMC 1 cut(s) 856
BseXI GCAGC 5 cut(s) 53, 653, 684, 789, 855
BsgI GTGCAG 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 930
BshFI GGCC 2 cut(s) 863, 914
BshTI ACCGGT 1 cut(s) 494
BsiHKAI GWGCWC 3 cut(s) 480, 752, 1053
BsiHKCI CYCGRG 1 cut(s) 1066
BsiSI CCGG 4 cut(s) 357, 495, 753, 869
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 4 cut(s) 195, 934, 1032, 1033
BsmAI GTCTC 2 cut(s) 289, 660
BsmBI CGTCTC 2 cut(s) 289, 660
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 2 cut(s) 863, 914
BsoBI CYCGRG 1 cut(s) 1066
Bsp119I TTCGAA 2 cut(s) 382, 609
Bsp1286I GDGCHC 4 cut(s) 480, 752, 856, 1053
Bsp143I GATC 5 cut(s) 361, 513, 558, 576, 876
BspANI GGCC 2 cut(s) 863, 914
BspCNI CTCAG 3 cut(s) 75, 445, 693
BspFNI CGCG 1 cut(s) 930
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 3 cut(s) 32, 1024, 1025
BspPI GGATC 2 cut(s) 553, 571
BspT104I TTCGAA 2 cut(s) 382, 609
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 1 cut(s) 554
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 849, 1067
BssMI GATC 5 cut(s) 361, 513, 558, 576, 876
BssNAI GTATAC 1 cut(s) 1101
Bst1107I GTATAC 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 604, 850
Bst4CI ACNGT 1 cut(s) 1105
Bst6I CTCTTC 5 cut(s) 59, 384, 606, 658, 867
BstAPI GCANNNNNTGC 2 cut(s) 408, 783
BstBAI YACGTR 1 cut(s) 859
BstBI TTCGAA 2 cut(s) 382, 609
BstC8I GCNNGC 2 cut(s) 465, 912
BstDEI CTNAG 3 cut(s) 62, 432, 701
BstF5I GGATG 2 cut(s) 864, 1045
BstFNI CGCG 1 cut(s) 930
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 5 cut(s) 364, 516, 561, 579, 879
BstMAI GTCTC 2 cut(s) 289, 660
BstMBI GATC 5 cut(s) 361, 513, 558, 576, 876
BstMWI GCNNNNNNNGC 9 cut(s) 95, 98, 101, 132, 270, 408, 783, 860, 916
BstNI CCWGG 2 cut(s) 604, 850
BstSCI CCNGG 4 cut(s) 602, 752, 848, 867
BstSLI GKGCMC 1 cut(s) 856
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 5 cut(s) 53, 653, 684, 789, 855
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BstZ17I GTATAC 1 cut(s) 1101
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 2 cut(s) 863, 914
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 2 cut(s) 864, 1045
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 561, 709
Cac8I GCNNGC 2 cut(s) 465, 912
CciI TCATGA 1 cut(s) 897
CfoI GCGC 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 4 cut(s) 198, 534, 912, 1023
CseI GACGC 2 cut(s) 577, 919
Csp6I GTAC 1 cut(s) 616
CspAI ACCGGT 1 cut(s) 494
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 2 cut(s) 898, 916
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 3 cut(s) 62, 432, 701
DpnI GATC 5 cut(s) 363, 515, 560, 578, 878
DpnII GATC 5 cut(s) 361, 513, 558, 576, 876
DraIII CACNNNGTG 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 5 cut(s) 59, 384, 606, 658, 867
EarI CTCTTC 5 cut(s) 59, 384, 606, 658, 867
EciI GGCGGA 1 cut(s) 312
Ecl136II GAGCTC 3 cut(s) 478, 750, 1051
Eco24I GRGCYC 3 cut(s) 480, 752, 1053
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 3 cut(s) 198, 534, 1023
Eco53kI GAGCTC 3 cut(s) 478, 750, 1051
Eco72I CACGTG 1 cut(s) 859
Eco81I CCTNAGG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 1066
EcoICRI GAGCTC 3 cut(s) 478, 750, 1051
EcoO109I RGGNCCY 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 602, 848
EcoRV GATATC 1 cut(s) 349
EcoT38I GRGCYC 3 cut(s) 480, 752, 1053
Esp3I CGTCTC 2 cut(s) 289, 660
FaeI CATG 2 cut(s) 901, 919
FaiI YATR 8 cut(s) 11, 129, 426, 506, 518, 899, 917, 1101
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 1 cut(s) 1036
FatI CATG 2 cut(s) 897, 915
FauI CCCGC 6 cut(s) 307, 737, 779, 903, 931, 980
FblI GTMKAC 1 cut(s) 1100
FokI GGATG 2 cut(s) 851, 1052
FriOI GRGCYC 3 cut(s) 480, 752, 1053
GlaI GCGC 1 cut(s) 655
GsuI CTGGAG 2 cut(s) 253, 832
HaeII RGCGCY 1 cut(s) 657
HaeIII GGCC 2 cut(s) 863, 914
HapII CCGG 4 cut(s) 357, 495, 753, 869
HgaI GACGC 2 cut(s) 577, 919
HhaI GCGC 1 cut(s) 656
Hin1II CATG 2 cut(s) 901, 919
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HinfI GANTC 6 cut(s) 138, 341, 738, 825, 956, 995
HpaII CCGG 4 cut(s) 357, 495, 753, 869
HphI GGTGA 3 cut(s) 70, 356, 801
Hpy166II GTNNAC 2 cut(s) 973, 1101
Hpy188I TCNGA 5 cut(s) 316, 337, 346, 475, 961
Hpy188III TCNNGA 5 cut(s) 208, 440, 511, 592, 898
Hpy8I GTNNAC 2 cut(s) 973, 1101
Hpy99I CGWCG 1 cut(s) 935
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 1105
HpyCH4IV ACGT 3 cut(s) 858, 903, 969
HpyCH4V TGCA 3 cut(s) 402, 762, 777
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 98, 101, 132, 270, 408, 783, 860, 916
HpyF3I CTNAG 3 cut(s) 62, 432, 701
HpySE526I ACGT 3 cut(s) 858, 903, 969
Hsp92II CATG 2 cut(s) 901, 919
HspAI GCGC 1 cut(s) 654
KflI GGGWCCC 1 cut(s) 1023
Kzo9I GATC 5 cut(s) 361, 513, 558, 576, 876
LmnI GCTCC 7 cut(s) 269, 475, 483, 747, 755, 851, 1048
Lsp1109I GCAGC 5 cut(s) 53, 653, 684, 789, 855
MaeII ACGT 3 cut(s) 858, 903, 969
MalI GATC 5 cut(s) 363, 515, 560, 578, 878
MboI GATC 5 cut(s) 361, 513, 558, 576, 876
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 4 cut(s) 480, 752, 856, 1053
MlsI TGGCCA 1 cut(s) 863
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 4 cut(s) 132, 335, 747, 950
MmeI TCCRAC 3 cut(s) 453, 640, 798
Mox20I TGGCCA 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 215
MscI TGGCCA 1 cut(s) 863
MseI TTAA 1 cut(s) 1062
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 4 cut(s) 357, 495, 753, 869
MspR9I CCNGG 4 cut(s) 604, 754, 850, 869
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 2 cut(s) 604, 850
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 9 cut(s) 95, 98, 101, 132, 270, 408, 783, 860, 916
NciI CCSGG 2 cut(s) 754, 869
NdeII GATC 5 cut(s) 361, 513, 558, 576, 876
NlaIII CATG 2 cut(s) 901, 919
NlaIV GGNNCC 3 cut(s) 32, 1024, 1025
NspV TTCGAA 2 cut(s) 382, 609
PagI TCATGA 1 cut(s) 897
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 675
PctI GAATGC 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 825, 995
PfoI TCCNGGA 2 cut(s) 752, 867
PinAI ACCGGT 1 cut(s) 494
PleI GAGTC 4 cut(s) 132, 335, 746, 950
PmaCI CACGTG 1 cut(s) 859
PmlI CACGTG 1 cut(s) 859
PpsI GAGTC 4 cut(s) 132, 335, 746, 950
Ppu21I YACGTR 1 cut(s) 859
PpuMI RGGWCCY 1 cut(s) 1023
Psp124BI GAGCTC 3 cut(s) 480, 752, 1053
Psp5II RGGWCCY 1 cut(s) 1023
Psp6I CCWGG 2 cut(s) 602, 848
PspCI CACGTG 1 cut(s) 859
PspGI CCWGG 2 cut(s) 602, 848
PspN4I GGNNCC 3 cut(s) 32, 1024, 1025
PspPI GGNCC 4 cut(s) 198, 534, 912, 1023
PspPPI RGGWCCY 1 cut(s) 1023
PsuI RGATCY 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 3 cut(s) 480, 752, 1053
SaqAI TTAA 1 cut(s) 1062
Sau3AI GATC 5 cut(s) 361, 513, 558, 576, 876
Sau96I GGNCC 4 cut(s) 198, 534, 912, 1023
SchI GAGTC 4 cut(s) 132, 335, 747, 950
ScrFI CCNGG 4 cut(s) 604, 754, 850, 869
SduI GDGCHC 4 cut(s) 480, 752, 856, 1053
SfuI TTCGAA 2 cut(s) 382, 609
SinI GGWCC 3 cut(s) 198, 534, 1023
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SstI GAGCTC 3 cut(s) 480, 752, 1053
StyD4I CCNGG 4 cut(s) 602, 752, 848, 867
TaaI ACNGT 1 cut(s) 1105
TaiI ACGT 3 cut(s) 861, 906, 972
TaqI TCGA 6 cut(s) 382, 441, 609, 716, 839, 879
TaqII GACCGA 1 cut(s) 551
TatI WGTACW 1 cut(s) 615
TauI GCSGC 8 cut(s) 92, 95, 98, 101, 104, 259, 414, 930
TfiI GAWTC 2 cut(s) 825, 995
Tru1I TTAA 1 cut(s) 1062
Tru9I TTAA 1 cut(s) 1062
TscAI CASTG 2 cut(s) 561, 716
TseI GCWGC 5 cut(s) 66, 641, 697, 777, 843
TspDTI ATGAA 3 cut(s) 135, 886, 914
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 2 cut(s) 561, 716
VpaK11BI GGWCC 3 cut(s) 198, 534, 1023
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.