FvH4_3g38290

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013422
Physical Location & Seq
Forward (+)
32676808 .. 32678590
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38290.t1

Sequence Viewer

Length: 1107 bp
ATGGCGACCATATCATCATTCTTCAACAGATTCCTCTCTTTCTTCCTCCTCCTCTTCCACCTCAGCTGCTTCACTATCACCCCCACCGCCGCCGCAGCCACCGCCATCAATCCCCACCGCCGTAAACGCAGACTCTCTTCACTTCTCTCCAAACCCTCTCTAAAACCCCAAAAGGCCATTTCTTCTTCTTGGTCCTTTCTCAAGAAACTCTTCAAGTCCTCCAACACCCAAACTCACCACCTCTCCACCTCGCCTCGCTCCTCCAGCCACTCCCTCGTCTCCCTCGTCGTCCCAACCCAAATCAAACCCGACGTCCCTAAACACTCCGACGACTCCGATGTCTTCTCCGGCGACCACCACTTCTTCCCTCTCCGAAACGACATCTTCCCCTGCACAACTTGCGGCGAGATTTTCCATAAGCCTCAAGCTCTCGACCACCACCAAGCAGTCAAGCACGCCGTGTCGGAGCTCCACAACGGCGACACCGGTAAGAACATAGTCCAAATCATATTCCAAACAGGCTGGAACGCTAACGACACGCGGAAAACGCCACTGATCCACCGCATTCTGAAGATCCACAACAGTGCCAAGACACTTGCCAGGTTCGAAGAGTACAGAGAGTTCGTCAAGTCCAAGGCCGCGAGAAACAGCGCCGTCAGAAGAGACGAGAGGTGCGTGGCGGACGGGAATGAGCTGCTGAGATTTCACTGCTCGACTTTCCTCTGCGACTTGGGAATCGGCGGGAGCTCCGGGATTTGCAGCCAGCAGTACTGCAGCGTTTGCGGGATCATCAAGTCAGGGTTCTCACCTAAGTTGGACGGAATCTCCACGCTGTCTAGCAGCTCCAGGGCGCACGTGGCGATCCCGGAGGAGATCGAGGAGGAGTTCAAGTTCTTGAACGTGAAGAGGGCCATGCTGGTCTGCCGTGTCGTGGCGGGTCGGGTCGGGTGCGACTCAGACGATGACGTGGACAAGGACGGTGGCGGGTTTGACTCGGTCGTGGGGAGGAGTGGGAGTGGGACCCAGATGAGGGTGGATGAGGAGGAGCTCCTGGTGTTTAACCCGAGGGCTGTGCTCCCCTGCTTTGTGATTGTGTATACCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

40.78

Weight (kDa)

8.98

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 1097
AccII CGCG 2 cut(s) 541, 641
AclWI GGATC 4 cut(s) 550, 568, 794, 856
AcuI CTGAAG 1 cut(s) 590
AcvI CACGTG 1 cut(s) 856
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 2 cut(s) 614, 770
AfiI CCNNNNNNNGG 3 cut(s) 931, 1029, 1030
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 4 cut(s) 25, 214, 889, 898
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 599, 845, 1050
AleI CACNNNNGTG 1 cut(s) 582
AloI GAACNNNNNNTCC 2 cut(s) 875, 907
AluBI AGCT 7 cut(s) 66, 428, 469, 694, 747, 843, 1048
AluI AGCT 7 cut(s) 66, 428, 469, 694, 747, 843, 1048
Alw21I GWGCWC 4 cut(s) 471, 749, 1050, 1077
Alw26I GTCTC 2 cut(s) 283, 657
AlwI GGATC 4 cut(s) 550, 568, 794, 856
Ama87I CYCGRG 1 cut(s) 1063
AoxI GGCC 3 cut(s) 174, 636, 909
ApeKI GCWGC 6 cut(s) 66, 95, 694, 759, 774, 840
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AsiGI ACCGGT 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 653, 853
AspS9I GGNCC 3 cut(s) 192, 909, 1020
AsuC2I CCSGG 2 cut(s) 751, 866
AsuHPI GGTGA 3 cut(s) 70, 227, 798
AsuII TTCGAA 1 cut(s) 606
AvaI CYCGRG 1 cut(s) 1063
AvaII GGWCC 2 cut(s) 192, 1020
BanII GRGCYC 3 cut(s) 471, 749, 1050
BbrPI CACGTG 1 cut(s) 856
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 4 cut(s) 471, 749, 1050, 1077
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 6 cut(s) 53, 107, 681, 771, 786, 852
BccI CCATC 1 cut(s) 113
BceAI ACGGC 5 cut(s) 105, 443, 493, 638, 909
BcgI CGANNNNNNTGC 2 cut(s) 1054, 1088
BciT130I CCWGG 3 cut(s) 601, 847, 1052
BcnI CCSGG 2 cut(s) 751, 866
BcoDI GTCTC 2 cut(s) 283, 657
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 772
BfoI RGCGCY 1 cut(s) 654
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 5 cut(s) 601, 751, 847, 866, 1052
Bme18I GGWCC 2 cut(s) 192, 1020
BmeT110I CYCGRG 1 cut(s) 1063
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 3 cut(s) 192, 909, 1020
BmiI GGNNCC 2 cut(s) 1021, 1022
BmrFI CCNGG 5 cut(s) 601, 751, 847, 866, 1052
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 247, 829
Bpu10I CCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 185, 408
BpuMI CCSGG 2 cut(s) 751, 866
BsaAI YACGTR 1 cut(s) 856
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 633, 846, 1064
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 8 cut(s) 227, 257, 809, 839, 875, 905, 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 931, 1029, 1030
Bse118I RCCGGY 1 cut(s) 485
BseBI CCWGG 3 cut(s) 601, 847, 1052
BseDI CCNNGG 3 cut(s) 633, 846, 1064
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 3 cut(s) 931, 1029, 1030
BseMII CTCAG 3 cut(s) 76, 689, 969
BseRI GAGGAG 9 cut(s) 38, 41, 250, 884, 893, 896, 1021, 1055, 1058
BseXI GCAGC 6 cut(s) 53, 107, 681, 771, 786, 852
BsgI GTGCAG 1 cut(s) 376
Bsh1236I CGCG 2 cut(s) 541, 641
Bsh1285I CGRYCG 1 cut(s) 999
BshFI GGCC 3 cut(s) 176, 638, 911
BshTI ACCGGT 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 999
BsiHKAI GWGCWC 4 cut(s) 471, 749, 1050, 1077
BsiHKCI CYCGRG 1 cut(s) 1063
BsiSI CCGG 4 cut(s) 348, 486, 750, 866
BslFI GGGAC 3 cut(s) 275, 299, 1033
BslI CCNNNNNNNGG 3 cut(s) 931, 1029, 1030
BsmAI GTCTC 2 cut(s) 283, 657
BsmBI CGTCTC 2 cut(s) 283, 657
BsmFI GGGAC 3 cut(s) 275, 299, 1033
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 3 cut(s) 176, 638, 911
BsoBI CYCGRG 1 cut(s) 1063
Bsp119I TTCGAA 1 cut(s) 606
Bsp1286I GDGCHC 4 cut(s) 471, 749, 1050, 1077
Bsp143I GATC 5 cut(s) 555, 573, 786, 861, 873
BspANI GGCC 3 cut(s) 176, 638, 911
BspCNI CTCAG 3 cut(s) 75, 690, 968
BspFNI CGCG 2 cut(s) 541, 641
BspLI GGNNCC 2 cut(s) 1021, 1022
BspMAI CTGCAG 1 cut(s) 776
BspPI GGATC 4 cut(s) 550, 568, 794, 856
BspT104I TTCGAA 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 633, 846, 1064
BssMI GATC 5 cut(s) 555, 573, 786, 861, 873
BssNAI GTATAC 1 cut(s) 1098
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 633
Bst1107I GTATAC 1 cut(s) 1098
Bst2UI CCWGG 3 cut(s) 601, 847, 1052
Bst4CI ACNGT 3 cut(s) 584, 980, 1102
Bst6I CTCTTC 6 cut(s) 59, 142, 215, 603, 655, 899
BstACI GRCGYC 1 cut(s) 312
BstAPI GCANNNNNTGC 2 cut(s) 399, 780
BstBAI YACGTR 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 456, 764
BstDEI CTNAG 4 cut(s) 62, 698, 810, 955
BstF5I GGATG 1 cut(s) 1042
BstFNI CGCG 2 cut(s) 541, 641
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 2 cut(s) 653, 853
BstKTI GATC 5 cut(s) 558, 576, 789, 864, 876
BstMAI GTCTC 2 cut(s) 283, 657
BstMBI GATC 5 cut(s) 555, 573, 786, 861, 873
BstMCI CGRYCG 1 cut(s) 999
BstMWI GCNNNNNNNGC 8 cut(s) 95, 101, 126, 264, 399, 547, 780, 857
BstNI CCWGG 3 cut(s) 601, 847, 1052
BstSCI CCNGG 5 cut(s) 599, 749, 845, 864, 1050
BstSFI CTRYAG 1 cut(s) 772
BstUI CGCG 2 cut(s) 541, 641
BstV1I GCAGC 6 cut(s) 53, 107, 681, 771, 786, 852
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BstZ17I GTATAC 1 cut(s) 1098
BsuRI GGCC 3 cut(s) 176, 638, 911
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 1 cut(s) 1042
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 3 cut(s) 551, 589, 706
Cac8I GCNNGC 2 cut(s) 456, 764
CfoI GCGC 2 cut(s) 653, 853
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 3 cut(s) 192, 909, 1020
Csp6I GTAC 2 cut(s) 613, 769
CspAI ACCGGT 1 cut(s) 485
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 1 cut(s) 913
CviQI GTAC 2 cut(s) 613, 769
DdeI CTNAG 4 cut(s) 62, 698, 810, 955
DpnI GATC 5 cut(s) 557, 575, 788, 863, 875
DpnII GATC 5 cut(s) 555, 573, 786, 861, 873
DraIII CACNNNGTG 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 6 cut(s) 59, 142, 215, 603, 655, 899
EarI CTCTTC 6 cut(s) 59, 142, 215, 603, 655, 899
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 3 cut(s) 469, 747, 1048
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 3 cut(s) 471, 749, 1050
Eco47I GGWCC 2 cut(s) 192, 1020
Eco53kI GAGCTC 3 cut(s) 469, 747, 1048
Eco57I CTGAAG 1 cut(s) 590
Eco72I CACGTG 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 1063
EcoICRI GAGCTC 3 cut(s) 469, 747, 1048
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRII CCWGG 3 cut(s) 599, 845, 1050
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 3 cut(s) 471, 749, 1050
ErhI CCWWGG 1 cut(s) 633
Esp3I CGTCTC 2 cut(s) 283, 657
FaeI CATG 1 cut(s) 916
FaiI YATR 6 cut(s) 11, 417, 497, 509, 914, 1098
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 3 cut(s) 275, 299, 1033
FatI CATG 1 cut(s) 912
FauI CCCGC 4 cut(s) 734, 776, 928, 977
FblI GTMKAC 1 cut(s) 1097
FokI GGATG 1 cut(s) 1049
FriOI GRGCYC 3 cut(s) 471, 749, 1050
FspBI CTAG 1 cut(s) 837
GlaI GCGC 2 cut(s) 652, 852
GsuI CTGGAG 2 cut(s) 247, 829
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 3 cut(s) 176, 638, 911
HapII CCGG 4 cut(s) 348, 486, 750, 866
HhaI GCGC 2 cut(s) 653, 853
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 916
Hin6I GCGC 2 cut(s) 651, 851
HinP1I GCGC 2 cut(s) 651, 851
HinfI GANTC 7 cut(s) 30, 132, 332, 735, 822, 953, 992
HpaII CCGG 4 cut(s) 348, 486, 750, 866
HphI GGTGA 3 cut(s) 70, 227, 798
Hpy166II GTNNAC 3 cut(s) 125, 970, 1098
Hpy188I TCNGA 7 cut(s) 328, 337, 374, 466, 570, 659, 958
Hpy188III TCNNGA 3 cut(s) 202, 431, 895
Hpy8I GTNNAC 3 cut(s) 125, 970, 1098
Hpy99I CGWCG 3 cut(s) 290, 314, 332
HpyCH4III ACNGT 3 cut(s) 584, 980, 1102
HpyCH4IV ACGT 4 cut(s) 312, 855, 900, 966
HpyCH4V TGCA 3 cut(s) 393, 759, 774
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 101, 126, 264, 399, 547, 780, 857
HpyF3I CTNAG 4 cut(s) 62, 698, 810, 955
HpySE526I ACGT 4 cut(s) 312, 855, 900, 966
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 916
HspAI GCGC 2 cut(s) 651, 851
KflI GGGWCCC 1 cut(s) 1020
Kzo9I GATC 5 cut(s) 555, 573, 786, 861, 873
LmnI GCTCC 9 cut(s) 263, 466, 474, 744, 752, 848, 1045, 1053, 1080
Lsp1109I GCAGC 6 cut(s) 53, 107, 681, 771, 786, 852
MaeI CTAG 1 cut(s) 837
MaeII ACGT 4 cut(s) 312, 855, 900, 966
MalI GATC 5 cut(s) 557, 575, 788, 863, 875
MboI GATC 5 cut(s) 555, 573, 786, 861, 873
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 4 cut(s) 471, 749, 1050, 1077
MlyI GAGTC 4 cut(s) 126, 326, 947, 986
MmeI TCCRAC 4 cut(s) 246, 351, 444, 795
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 1059
MslI CAYNNNNRTG 1 cut(s) 582
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 4 cut(s) 348, 486, 750, 866
MspR9I CCNGG 5 cut(s) 601, 751, 847, 866, 1052
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 3 cut(s) 601, 847, 1052
MvnI CGCG 2 cut(s) 541, 641
MwoI GCNNNNNNNGC 8 cut(s) 95, 101, 126, 264, 399, 547, 780, 857
NciI CCSGG 2 cut(s) 751, 866
NdeII GATC 5 cut(s) 555, 573, 786, 861, 873
NlaIII CATG 1 cut(s) 916
NlaIV GGNNCC 2 cut(s) 1021, 1022
NspV TTCGAA 1 cut(s) 606
OliI CACNNNNGTG 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 672
PctI GAATGC 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 30, 735, 822
PflFI GACNNNGTC 1 cut(s) 995
PfoI TCCNGGA 2 cut(s) 749, 864
PinAI ACCGGT 1 cut(s) 485
PleI GAGTC 4 cut(s) 126, 326, 947, 986
PmaCI CACGTG 1 cut(s) 856
PmlI CACGTG 1 cut(s) 856
PpsI GAGTC 4 cut(s) 126, 326, 947, 986
Ppu21I YACGTR 1 cut(s) 856
PpuMI RGGWCCY 1 cut(s) 1020
Psp124BI GAGCTC 3 cut(s) 471, 749, 1050
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 3 cut(s) 599, 845, 1050
PspCI CACGTG 1 cut(s) 856
PspGI CCWGG 3 cut(s) 599, 845, 1050
PspN4I GGNNCC 2 cut(s) 1021, 1022
PspPI GGNCC 3 cut(s) 192, 909, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PsrI GAACNNNNNNTAC 2 cut(s) 605, 637
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 995
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 2 cut(s) 614, 770
RsaNI GTAC 2 cut(s) 613, 769
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 3 cut(s) 471, 749, 1050
SaqAI TTAA 1 cut(s) 1059
Sau3AI GATC 5 cut(s) 555, 573, 786, 861, 873
Sau96I GGNCC 3 cut(s) 192, 909, 1020
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 4 cut(s) 126, 326, 947, 986
ScrFI CCNGG 5 cut(s) 601, 751, 847, 866, 1052
SduI GDGCHC 4 cut(s) 471, 749, 1050, 1077
SfcI CTRYAG 1 cut(s) 772
SfuI TTCGAA 1 cut(s) 606
SinI GGWCC 2 cut(s) 192, 1020
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 200, 423
SmoI CTYRAG 2 cut(s) 200, 423
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 3 cut(s) 471, 749, 1050
StyD4I CCNGG 5 cut(s) 599, 749, 845, 864, 1050
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 3 cut(s) 584, 980, 1102
TaiI ACGT 4 cut(s) 315, 858, 903, 969
TaqI TCGA 4 cut(s) 432, 606, 713, 876
TaqII GACCGA 1 cut(s) 985
TatI WGTACW 2 cut(s) 612, 768
TauI GCSGC 4 cut(s) 92, 95, 405, 641
TfiI GAWTC 3 cut(s) 30, 735, 822
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 3 cut(s) 558, 589, 713
TseI GCWGC 6 cut(s) 66, 95, 694, 759, 774, 840
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 3 cut(s) 558, 589, 713
Tth111I GACNNNGTC 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 192, 1020
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 1097
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 837
ZraI GACGTC 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.