Rorug05G0393400

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013422
Physical Location & Seq
Forward (+)
53869048 .. 53869614
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0393400.1

Sequence Viewer

Length: 435 bp
ATGTTTTTTGAAACATTGGAAGAGGCAGGAAGGTATTATGAAGATTATGGTCGACAAGAAGGTTTTTGGACTCGTATTCAAAGTTCATCAAAGTCTAGATCACAGTCAAATGAAGTGACGAGTAGATTATTTGTTTGTGCACATCAAGGTAAACATGTCATGCAGACTCAAAAAGAGGATGATATGATAGAGGAAGAAGAGAAAGATGAGGAAGAAATATGTGACCAACAGACTGGAAAGAAGAGGCGGAGAAGTTGTTCAATAGTTAAATGTGGGTGTGAGGCTAGTATGCGAGTTCTTCATGACAAATGGACTGACAAATGGAAAGTATCAGTTTTCAGTGACATTCACAATCATAAAATTGTGACACCAGCTCGTAGGATGATGATGAAGTCGAATAGACATATGCTCAATGCAGCAAAAGATTTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

17.03

Weight (kDa)

7.68

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 11 - 122 2.5e-15 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 3 cut(s) 11, 80, 261
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw21I GWGCWC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 428
BfaI CTAG 2 cut(s) 96, 285
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 184, 387
BseNI ACTGG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 1 cut(s) 247
BspHI TCATGA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 238
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 3 cut(s) 15, 192, 236
BstF5I GGATG 2 cut(s) 184, 387
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 184, 387
BtsIMutI CAGTG 1 cut(s) 346
CciI TCATGA 1 cut(s) 301
CviAII CATG 3 cut(s) 155, 160, 302
CviJI RGCY 2 cut(s) 284, 374
CviKI_1 RGCY 2 cut(s) 284, 374
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 15, 192, 236
EarI CTCTTC 3 cut(s) 15, 192, 236
EciI GGCGGA 1 cut(s) 262
FaeI CATG 3 cut(s) 158, 163, 305
FatI CATG 3 cut(s) 154, 159, 301
FauNDI CATATG 1 cut(s) 405
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 191, 394
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 96, 285
GluI GCNGC 1 cut(s) 417
Hin1II CATG 3 cut(s) 158, 163, 305
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 2 cut(s) 70, 166
Hpy166II GTNNAC 3 cut(s) 53, 140, 152
Hpy188III TCNNGA 2 cut(s) 96, 302
Hpy8I GTNNAC 3 cut(s) 53, 140, 152
HpyAV CCTTC 2 cut(s) 24, 53
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 140, 163, 416
Hsp92II CATG 3 cut(s) 158, 163, 305
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 12, 219, 384
Lsp1109I GCAGC 1 cut(s) 428
MaeI CTAG 2 cut(s) 96, 285
MaeIII GTNAC 4 cut(s) 115, 221, 341, 364
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 7 cut(s) 32, 53, 206, 209, 224, 253, 290
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 360
MlyI GAGTC 2 cut(s) 64, 160
MnlI CCTC 6 cut(s) 16, 169, 184, 202, 237, 274
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 2 cut(s) 267, 428
NdeI CATATG 1 cut(s) 405
NdeII GATC 1 cut(s) 98
NlaIII CATG 3 cut(s) 158, 163, 305
NmuCI GTSAC 4 cut(s) 115, 221, 341, 364
NspI RCATGY 1 cut(s) 158
PagI TCATGA 1 cut(s) 301
PciI ACATGT 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 2 cut(s) 64, 160
PpsI GAGTC 2 cut(s) 64, 160
PscI ACATGT 1 cut(s) 154
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SalI GTCGAC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 267, 428
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 2 cut(s) 64, 160
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 35, 64, 151, 376
Sse9I AATT 1 cut(s) 360
SsiI CCGC 1 cut(s) 247
SspMI CTAG 2 cut(s) 96, 285
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 52, 395
TasI AATT 1 cut(s) 360
Tru1I TTAA 2 cut(s) 267, 428
Tru9I TTAA 2 cut(s) 267, 428
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 4 cut(s) 115, 221, 341, 364
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 4 cut(s) 115, 221, 341, 364
TspDTI ATGAA 5 cut(s) 54, 75, 126, 290, 404
TspRI CASTG 1 cut(s) 346
VneI GTGCAC 1 cut(s) 138
XbaI TCTAGA 1 cut(s) 95
XceI RCATGY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 2 cut(s) 96, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.