Prupe.6G060000_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013422
Physical Location & Seq
Reverse (-)
4167049 .. 4169256
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G060000.1

Sequence Viewer

Length: 1122 bp
ATGGCCAACATATCGACACTCTTCCACAAGTTCCTATCTCTCTTCATCCTCCTCCTCCACCTTGGCTGCTTCACTTTCACCACCAACAACCACCACCCTCCAACCAAAAAACACAAGCTCTCTTCCCTTCTCTCTAAACCCACCCTAAAACCCCAAAAAGCCCTCACAGCCTCCTGGTCCTATCTCAAGCGCATCTTCACCTCCCCAAGAACCTGCAAGATCACCTGCACCAACATCATCCAATCCCACCTCTCCACGCCTCCTCGCTCCTCCCACCACTCCATCGTCTCCCTCGTCCAACCCGACCCGGACTCCAAATACCCATCTGGCTCCTTCCCCGAATCCGACATTTCGGCCGCTTCCCACCCCTTCTTCCCTCTCCGAAACGATATCTTCCCCTGCACCGCCTGCGGCGAAATCTTCCCGAAACCAGAGACTCTCGACAACCACCAAGCTACCCGCCACGCCGTTTCGGAGCTCATCGACGGAGACTCGGGCAAAAACATCGTCCGGATCATTTTCAAAACAGGCTGGACCGATACCAGAAAAGCCCCCGAAATTCGCCGGATCTTGAAGATCCACAACAGCGAAAAAATCCTGTCGAGGTTCGAGGAGTACCGAGAGGCCGTGAAGTGCAAAGCGGCGCGAAATGGCCCCGTTCGTAGGAGGGACGAGCGGTGCATCGCCGACGGGAACGAGCTTCTCCGATTTCACTGCTCGACTTTCGTGTGCGATTTGGGACTCAACGGGAATTCCGGGATTTGTAATCGCGAGTACTGTAGCGTCTGCGGGATTATTAAATCCGGATTCTCACCCAAGTTGGACGGCATTTCCACGCTGTCGAGTAGCTCCAGGGCACACGTGGCGATCCCGGAGGACATCGAGCAGGAGTTTGAGTTCATGAACGTGAAACGTGCCATGCTTGTTTGTCGGGTCGTGGCGGGTCGGGTCGGGTGTGACTCGGAGGAGGATCTGCATGACGTGGACAAGGAGGGCGGCGGGTTTGACTCGGTGGTGGGGAGAGGAGGGAGTGGGGCCCACACGAGGGTGGATGAGGAGGAGCTCTTGGTGTTTAATCCGAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTACACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

8.57

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 2 cut(s) 221, 233
AccBSI CCGCTC 1 cut(s) 676
AccII CGCG 2 cut(s) 646, 771
AccIII TCCGGA 2 cut(s) 510, 803
AclWI GGATC 5 cut(s) 521, 571, 575, 862, 978
AcoI YGGCCR 2 cut(s) 3, 354
AcsI RAATTY 2 cut(s) 558, 751
AcvI CACGTG 1 cut(s) 862
AdeI CACNNNGTG 1 cut(s) 1119
AfaI GTAC 3 cut(s) 617, 776, 1112
AfiI CCNNNNNNNGG 3 cut(s) 663, 1044, 1045
AflIII ACRYGT 1 cut(s) 859
AgsI TTSAA 2 cut(s) 523, 574
AjiI CACGTC 1 cut(s) 982
AjnI CCWGG 2 cut(s) 173, 851
AleI CACNNNNGTG 1 cut(s) 1046
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
AluBI AGCT 6 cut(s) 118, 455, 478, 700, 849, 1063
AluI AGCT 6 cut(s) 118, 455, 478, 700, 849, 1063
Alw21I GWGCWC 2 cut(s) 480, 1065
Alw26I GTCTC 3 cut(s) 292, 428, 483
AlwI GGATC 5 cut(s) 521, 571, 575, 862, 978
Ama87I CYCGRG 1 cut(s) 493
Aor13HI TCCGGA 2 cut(s) 510, 803
AoxI GGCC 5 cut(s) 3, 354, 624, 652, 1035
ApaI GGGCCC 1 cut(s) 1039
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 558, 751
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
AspLEI GCGC 2 cut(s) 192, 646
AspS9I GGNCC 5 cut(s) 177, 534, 653, 1035, 1036
AsuC2I CCSGG 3 cut(s) 308, 757, 872
AsuHPI GGTGA 4 cut(s) 70, 190, 214, 804
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 2 cut(s) 177, 534
BaeGI GKGCMC 2 cut(s) 859, 1039
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 480, 1039, 1065
BauI CACGAG 1 cut(s) 1042
BbrPI CACGTG 1 cut(s) 862
Bbv12I GWGCWC 2 cut(s) 480, 1065
BbvI GCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 290, 331
BceAI ACGGC 3 cut(s) 452, 611, 841
BcgI CGANNNNNNTGC 6 cut(s) 487, 521, 696, 730, 1069, 1103
BciT130I CCWGG 2 cut(s) 175, 853
BcnI CCSGG 3 cut(s) 308, 757, 872
BcoDI GTCTC 3 cut(s) 292, 428, 483
BfmI CTRYAG 1 cut(s) 778
BfuAI ACCTGC 2 cut(s) 221, 233
BisI GCNGC 5 cut(s) 67, 357, 412, 642, 997
BlsI GCNGC 5 cut(s) 68, 358, 413, 643, 998
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 5 cut(s) 175, 308, 757, 853, 872
Bme18I GGWCC 2 cut(s) 177, 534
BmeT110I CYCGRG 1 cut(s) 493
BmgBI CACGTC 1 cut(s) 982
BmgT120I GGNCC 5 cut(s) 177, 534, 653, 1035, 1036
BmiI GGNNCC 4 cut(s) 331, 655, 1036, 1037
BmrFI CCNGG 5 cut(s) 175, 308, 757, 853, 872
BmsI GCATC 2 cut(s) 201, 690
BpmI CTGGAG 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 3 cut(s) 308, 757, 872
BsaAI YACGTR 1 cut(s) 862
BsaJI CCNNGG 3 cut(s) 61, 852, 1079
BsaWI WCCGGW 2 cut(s) 510, 803
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 881, 911
Bsc4I CCNNNNNNNGG 3 cut(s) 663, 1044, 1045
BseAI TCCGGA 2 cut(s) 510, 803
BseBI CCWGG 2 cut(s) 175, 853
BseDI CCNNGG 3 cut(s) 61, 852, 1079
BseGI GGATG 3 cut(s) 45, 237, 1057
BseLI CCNNNNNNNGG 3 cut(s) 663, 1044, 1045
BseRI GAGGAG 9 cut(s) 41, 44, 252, 259, 626, 980, 1038, 1070, 1073
BseSI GKGCMC 2 cut(s) 859, 1039
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 2 cut(s) 211, 385
Bsh1236I CGCG 2 cut(s) 646, 771
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 5 cut(s) 5, 356, 626, 654, 1037
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 480, 1065
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 6 cut(s) 308, 511, 565, 756, 804, 872
BslFI GGGAC 2 cut(s) 683, 753
BslI CCNNNNNNNGG 3 cut(s) 663, 1044, 1045
BsmAI GTCTC 3 cut(s) 292, 428, 483
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 683, 753
BsnI GGCC 5 cut(s) 5, 356, 626, 654, 1037
BsoBI CYCGRG 1 cut(s) 493
Bsp120I GGGCCC 1 cut(s) 1035
Bsp1286I GDGCHC 4 cut(s) 480, 859, 1039, 1065
Bsp13I TCCGGA 2 cut(s) 510, 803
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 6 cut(s) 219, 513, 567, 576, 867, 970
Bsp68I TCGCGA 1 cut(s) 771
BspANI GGCC 5 cut(s) 5, 356, 626, 654, 1037
BspEI TCCGGA 2 cut(s) 510, 803
BspFNI CGCG 2 cut(s) 646, 771
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 4 cut(s) 331, 655, 1036, 1037
BspMI ACCTGC 2 cut(s) 221, 233
BspPI GGATC 5 cut(s) 521, 571, 575, 862, 978
BsrBI CCGCTC 1 cut(s) 676
BsrGI TGTACA 1 cut(s) 1110
BssECI CCNNGG 3 cut(s) 61, 852, 1079
BssMI GATC 6 cut(s) 219, 513, 567, 576, 867, 970
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 2 cut(s) 175, 853
Bst4CI ACNGT 2 cut(s) 779, 1117
Bst6I CTCTTC 3 cut(s) 26, 47, 127
BstAPI GCANNNNNTGC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 1110
BstBAI YACGTR 1 cut(s) 862
BstC8I GCNNGC 1 cut(s) 409
BstF5I GGATG 3 cut(s) 45, 237, 1057
BstFNI CGCG 2 cut(s) 646, 771
BstHHI GCGC 2 cut(s) 192, 646
BstKTI GATC 6 cut(s) 222, 516, 570, 579, 870, 973
BstMAI GTCTC 3 cut(s) 292, 428, 483
BstMBI GATC 6 cut(s) 219, 513, 567, 576, 867, 970
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 3 cut(s) 167, 408, 863
BstNI CCWGG 2 cut(s) 175, 853
BstSCI CCNGG 5 cut(s) 173, 306, 755, 851, 870
BstSFI CTRYAG 1 cut(s) 778
BstSLI GKGCMC 2 cut(s) 859, 1039
BstUI CGCG 2 cut(s) 646, 771
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 3 cut(s) 567, 576, 970
BstYI RGATCY 3 cut(s) 567, 576, 970
BstZI CGGCCG 1 cut(s) 354
BsuRI GGCC 5 cut(s) 5, 356, 626, 654, 1037
BtgZI GCGATG 1 cut(s) 667
BtrI CACGTC 1 cut(s) 982
BtsCI GGATG 3 cut(s) 45, 237, 1057
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 712, 1113
BtuMI TCGCGA 1 cut(s) 771
BveI ACCTGC 2 cut(s) 221, 233
Cac8I GCNNGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 900
CfoI GCGC 2 cut(s) 192, 646
Cfr13I GGNCC 5 cut(s) 177, 534, 653, 1035, 1036
CseI GACGC 1 cut(s) 772
Csp6I GTAC 3 cut(s) 616, 775, 1111
CviAII CATG 3 cut(s) 901, 919, 977
CviQI GTAC 3 cut(s) 616, 775, 1111
DpnI GATC 6 cut(s) 221, 515, 569, 578, 869, 972
DpnII GATC 6 cut(s) 219, 513, 567, 576, 867, 970
DraIII CACNNNGTG 1 cut(s) 1119
EaeI YGGCCR 2 cut(s) 3, 354
EagI CGGCCG 1 cut(s) 354
Eam1104I CTCTTC 3 cut(s) 26, 47, 127
EarI CTCTTC 3 cut(s) 26, 47, 127
Ecl136II GAGCTC 2 cut(s) 478, 1063
EclXI CGGCCG 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 3 cut(s) 480, 1039, 1065
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 177, 534
Eco52I CGGCCG 1 cut(s) 354
Eco53kI GAGCTC 2 cut(s) 478, 1063
Eco72I CACGTG 1 cut(s) 862
Eco88I CYCGRG 1 cut(s) 493
EcoICRI GAGCTC 2 cut(s) 478, 1063
EcoO109I RGGNCCY 1 cut(s) 1035
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 173, 851
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 3 cut(s) 480, 1039, 1065
ErhI CCWWGG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 3 cut(s) 904, 922, 980
FaiI YATR 4 cut(s) 11, 902, 920, 978
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 683, 753
FatI CATG 3 cut(s) 900, 918, 976
FauI CCCGC 4 cut(s) 467, 782, 934, 992
Fnu4HI GCNGC 5 cut(s) 67, 357, 412, 642, 997
FokI GGATG 3 cut(s) 32, 224, 1064
FriOI GRGCYC 3 cut(s) 480, 1039, 1065
Fsp4HI GCNGC 5 cut(s) 67, 357, 412, 642, 997
GlaI GCGC 2 cut(s) 191, 645
GluI GCNGC 5 cut(s) 67, 357, 412, 642, 997
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 5 cut(s) 5, 356, 626, 654, 1037
HapII CCGG 6 cut(s) 308, 511, 565, 756, 804, 872
HgaI GACGC 1 cut(s) 772
HhaI GCGC 2 cut(s) 192, 646
Hin1II CATG 3 cut(s) 904, 922, 980
Hin6I GCGC 2 cut(s) 190, 644
HinP1I GCGC 2 cut(s) 190, 644
HinfI GANTC 8 cut(s) 311, 341, 436, 491, 741, 807, 959, 1007
HpaII CCGG 6 cut(s) 308, 511, 565, 756, 804, 872
HphI GGTGA 4 cut(s) 70, 190, 214, 804
Hpy166II GTNNAC 3 cut(s) 985, 1111, 1113
Hpy188I TCNGA 6 cut(s) 346, 383, 475, 707, 964, 1080
Hpy188III TCNNGA 7 cut(s) 424, 440, 511, 571, 770, 804, 901
Hpy8I GTNNAC 3 cut(s) 985, 1111, 1113
Hpy99I CGWCG 2 cut(s) 488, 692
HpyAV CCTTC 3 cut(s) 137, 343, 379
HpyCH4III ACNGT 2 cut(s) 779, 1117
HpyCH4IV ACGT 4 cut(s) 861, 906, 913, 981
HpyCH4V TGCA 6 cut(s) 216, 228, 402, 636, 681, 976
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 408, 863
HpySE526I ACGT 4 cut(s) 861, 906, 913, 981
Hsp92II CATG 3 cut(s) 904, 922, 980
HspAI GCGC 2 cut(s) 190, 644
Kpn2I TCCGGA 2 cut(s) 510, 803
Kzo9I GATC 6 cut(s) 219, 513, 567, 576, 867, 970
LmnI GCTCC 5 cut(s) 272, 335, 475, 854, 1060
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 201, 690
MaeII ACGT 4 cut(s) 861, 906, 913, 981
MaeIII GTNAC 1 cut(s) 956
MalI GATC 6 cut(s) 221, 515, 569, 578, 869, 972
MbiI CCGCTC 1 cut(s) 676
MboI GATC 6 cut(s) 219, 513, 567, 576, 867, 970
MboII GAAGA 8 cut(s) 13, 34, 114, 187, 364, 385, 412, 586
MflI RGATCY 3 cut(s) 567, 576, 970
MhlI GDGCHC 4 cut(s) 480, 859, 1039, 1065
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 558, 751
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 6 cut(s) 305, 430, 485, 735, 953, 1001
MmeI TCCRAC 4 cut(s) 125, 322, 369, 801
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 510, 803
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 798, 1074
MslI CAYNNNNRTG 2 cut(s) 905, 1046
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 6 cut(s) 308, 511, 565, 756, 804, 872
MspR9I CCNGG 5 cut(s) 175, 308, 757, 853, 872
MvaI CCWGG 2 cut(s) 175, 853
MvnI CGCG 2 cut(s) 646, 771
MwoI GCNNNNNNNGC 3 cut(s) 167, 408, 863
NciI CCSGG 3 cut(s) 308, 757, 872
NdeII GATC 6 cut(s) 219, 513, 567, 576, 867, 970
NlaIII CATG 3 cut(s) 904, 922, 980
NlaIV GGNNCC 4 cut(s) 331, 655, 1036, 1037
NmuCI GTSAC 1 cut(s) 956
NruI TCGCGA 1 cut(s) 771
OliI CACNNNNGTG 1 cut(s) 1046
PagI TCATGA 1 cut(s) 900
PaqCI CACCTGC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 300
PfeI GAWTC 2 cut(s) 341, 807
PfoI TCCNGGA 2 cut(s) 755, 870
PkrI GCNGC 5 cut(s) 68, 358, 413, 643, 998
PleI GAGTC 6 cut(s) 305, 430, 485, 735, 953, 1001
PmaCI CACGTG 1 cut(s) 862
PmlI CACGTG 1 cut(s) 862
PpsI GAGTC 6 cut(s) 305, 430, 485, 735, 953, 1001
Ppu21I YACGTR 1 cut(s) 862
Psp124BI GAGCTC 2 cut(s) 480, 1065
Psp6I CCWGG 2 cut(s) 173, 851
PspCI CACGTG 1 cut(s) 862
PspGI CCWGG 2 cut(s) 173, 851
PspN4I GGNNCC 4 cut(s) 331, 655, 1036, 1037
PspOMI GGGCCC 1 cut(s) 1035
PspPI GGNCC 5 cut(s) 177, 534, 653, 1035, 1036
PsuI RGATCY 3 cut(s) 567, 576, 970
RruI TCGCGA 1 cut(s) 771
RsaI GTAC 3 cut(s) 617, 776, 1112
RsaNI GTAC 3 cut(s) 616, 775, 1111
RseI CAYNNNNRTG 2 cut(s) 905, 1046
SacI GAGCTC 2 cut(s) 480, 1065
SaqAI TTAA 2 cut(s) 798, 1074
SatI GCNGC 5 cut(s) 67, 357, 412, 642, 997
Sau3AI GATC 6 cut(s) 219, 513, 567, 576, 867, 970
Sau96I GGNCC 5 cut(s) 177, 534, 653, 1035, 1036
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 6 cut(s) 305, 430, 485, 735, 953, 1001
ScrFI CCNGG 5 cut(s) 175, 308, 757, 853, 872
SduI GDGCHC 4 cut(s) 480, 859, 1039, 1065
SfaNI GCATC 2 cut(s) 201, 690
SfcI CTRYAG 1 cut(s) 778
SinI GGWCC 2 cut(s) 177, 534
SmiMI CAYNNNNRTG 2 cut(s) 905, 1046
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 558, 751
SstI GAGCTC 2 cut(s) 480, 1065
StyD4I CCNGG 5 cut(s) 173, 306, 755, 851, 870
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 779, 1117
TaiI ACGT 4 cut(s) 864, 909, 916, 984
TaqI TCGA 8 cut(s) 14, 441, 483, 602, 609, 719, 842, 882
TaqII GACCGA 1 cut(s) 551
TasI AATT 2 cut(s) 558, 751
TatI WGTACW 2 cut(s) 774, 1110
TauI GCSGC 4 cut(s) 359, 414, 644, 999
TfiI GAWTC 2 cut(s) 341, 807
Tru1I TTAA 2 cut(s) 798, 1074
Tru9I TTAA 2 cut(s) 798, 1074
TscAI CASTG 2 cut(s) 719, 1120
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 3 cut(s) 34, 889, 917
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 719, 1120
VpaK11BI GGWCC 2 cut(s) 177, 534
XapI RAATTY 2 cut(s) 558, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.