Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Reverse (-)

12905345 .. 12907665

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAACCTCAACGAAAGGATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGATACTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAGCTTGGGTTACTTTTAGTGAAGTCACTGCTGCTGGTCATGCTGTTCGTCAGATGCAAAATTTTCCCTTCTATGATAAACCAATGCGCTTACAATATGCAAAAGCAAAGTCAGATTGTCTAGCTAAAGCTGAGGGAACTTTCGTTCCAAAAGATAAGAAGAGGAAGCAAGAAGAAAAAGTTGAAAGAAAGCGTGAAGATTCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGTGCCAATAACGGAGTCCCTGCGCCTTCGTTCCAGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATACTCTTCATTCAGAATCTCCCACACGAGACAACAAGCATGATGCTACAGCTTCTCTTCGAACAGTACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAGAGTACGAAGATGATGTTCAAGCTTCCATAGCTATGCAACCTCTTCAAGGTTTCAAAATCACTCCCCAGAATCCAATGGTCATCTCTTTCGCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

26.24

Weight (kDa)

9.33

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 82	2e-08	RNA recognition motif
RRM_5	PF13893	129 - 231	8.7e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	160 - 219	2.3e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	447
AccII	CGCG	1 cut(s)	590
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	542, 602
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	7 cut(s)	79, 139, 344, 553, 617, 644, 652
AjnI	CCWGG	2 cut(s)	544, 580
AloI	GAACNNNNNNTCC	4 cut(s)	288, 289, 320, 321
AluBI	AGCT	7 cut(s)	151, 164, 284, 290, 526, 620, 629
AluI	AGCT	7 cut(s)	151, 164, 284, 290, 526, 620, 629
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	2 cut(s)	249, 430
AspS9I	GGNCC	2 cut(s)	386, 401
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	24, 393
BciT130I	CCWGG	2 cut(s)	546, 582
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	546, 582
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	386, 401
BmrFI	CCNGG	2 cut(s)	546, 582
BmsI	GCATC	2 cut(s)	204, 507
BpiI	GAAGAC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	154, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	546, 582
BseDI	CCNNGG	2 cut(s)	154, 544
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	119, 282
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	534
Bsp143I	GATC	3 cut(s)	60, 83, 567
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	2 cut(s)	118, 283
BspFNI	CGCG	1 cut(s)	590
BspPI	GGATC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	534
BsrBI	CCGCTC	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	154, 544
BssMI	GATC	3 cut(s)	60, 83, 567
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	2 cut(s)	546, 582
Bst4CI	ACNGT	2 cut(s)	95, 540
Bst6I	CTCTTC	5 cut(s)	74, 314, 485, 536, 645
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	105, 291
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	590
BstHHI	GCGC	2 cut(s)	249, 430
BstKTI	GATC	3 cut(s)	63, 86, 570
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	60, 83, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 448, 626
BstNI	CCWGG	2 cut(s)	546, 582
BstSCI	CCNGG	2 cut(s)	544, 580
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	2 cut(s)	249, 430
Cfr13I	GGNCC	2 cut(s)	386, 401
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	541, 601
CviAII	CATG	2 cut(s)	200, 514
CviQI	GTAC	2 cut(s)	541, 601
DdeI	CTNAG	2 cut(s)	105, 291
DpnI	GATC	3 cut(s)	62, 85, 569
DpnII	GATC	3 cut(s)	60, 83, 567
Eam1104I	CTCTTC	5 cut(s)	74, 314, 485, 536, 645
EarI	CTCTTC	5 cut(s)	74, 314, 485, 536, 645
Eco47I	GGWCC	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	544, 580
FaeI	CATG	2 cut(s)	203, 517
FaiI	YATR	8 cut(s)	17, 201, 234, 258, 476, 515, 626, 632
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	199, 513
FauI	CCCGC	1 cut(s)	440
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	2 cut(s)	248, 429
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	387
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	2 cut(s)	249, 430
Hin1II	CATG	2 cut(s)	203, 517
Hin6I	GCGC	2 cut(s)	247, 428
HinP1I	GCGC	2 cut(s)	247, 428
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	162, 618
HinfI	GANTC	8 cut(s)	25, 142, 359, 420, 490, 549, 585, 667
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	147, 155, 213, 274, 489
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	238, 441
HpyCH4III	ACNGT	2 cut(s)	95, 540
HpyCH4V	TGCA	3 cut(s)	217, 260, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 448, 626
HpyF3I	CTNAG	2 cut(s)	105, 291
Hsp92II	CATG	2 cut(s)	203, 517
HspAI	GCGC	2 cut(s)	247, 428
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	60, 83, 567
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	8 cut(s)	180, 438, 452, 531, 558, 567, 594, 677
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	204, 507
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	169, 184
MalI	GATC	3 cut(s)	62, 85, 569
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	3 cut(s)	60, 83, 567
MboII	GAAGA	9 cut(s)	91, 151, 331, 344, 368, 472, 523, 617, 632
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	2 cut(s)	74, 220
MlyI	GAGTC	2 cut(s)	136, 429
MnlI	CCTC	7 cut(s)	59, 64, 108, 149, 286, 315, 648
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	546, 582
MvaI	CCWGG	2 cut(s)	546, 582
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	3 cut(s)	200, 448, 626
NdeII	GATC	3 cut(s)	60, 83, 567
NlaIII	CATG	2 cut(s)	203, 517
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PfeI	GAWTC	6 cut(s)	25, 359, 490, 549, 585, 667
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	136, 428
PpsI	GAGTC	2 cut(s)	136, 428
Psp6I	CCWGG	2 cut(s)	544, 580
PspGI	CCWGG	2 cut(s)	544, 580
PspPI	GGNCC	2 cut(s)	386, 401
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	2 cut(s)	542, 602
RsaNI	GTAC	2 cut(s)	541, 601
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	60, 83, 567
Sau96I	GGNCC	2 cut(s)	386, 401
SchI	GAGTC	2 cut(s)	136, 429
ScrFI	CCNGG	2 cut(s)	546, 582
SfaNI	GCATC	2 cut(s)	204, 507
SfcI	CTRYAG	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	629
Sse9I	AATT	2 cut(s)	74, 220
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	544, 580
TaaI	ACNGT	2 cut(s)	95, 540
TaqI	TCGA	2 cut(s)	534, 570
TasI	AATT	2 cut(s)	74, 220
TfiI	GAWTC	6 cut(s)	25, 359, 490, 549, 585, 667
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	472
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	642
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.