Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Reverse (-)

3356244 .. 3359500

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G046700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTTCAGGGGACATACCGCCTAACCAAACAATATACATTAAGAACCTCAACGAGAAAATCAAAAAAGAAGAATTGAAGAGGTCCCTGTATTGCTTATTCTCGCAATATGGAAAGATTTTGGATGTTGTAGCTTTGAAGACACCCAAGCTTCGTGGGCAAGCATGGGTTGCATTTCTAGAAGTGACTTCTGCCAGTAATGCTGTGCGTCAGATGCAAAACTTCCCATTTTATGATAAACCCATGCGGATTCAATATGCAAAAACAAAGTCAGATTGCATAGCTGATGCAGATGGAAGCTTAGGTCCAAAAGAAAAGAAAAAGAAGCAGGATGATAAAGCTGAAAGAAAGAAGCGAGGTGATGAAGGGCAGCAATCTGCTACGGAAAATGGTGCAACTGCCGAAAATGGAGGCAGAACACAGGCCTCATCTCGGCAAGGCAACCCAAATGCACATGAAGCAGCAGCTCCAAACAGCATTCTGTTCATTGAGAATTTGCCCCATGAAACCACTAGTGCTATGCTGGAATTGCTGTTCAAACAATACCCAGGATTTAGGGAAGTCCGGTTGATTGAAGCAAAGCCAGGCATCGCCTTTGTAGAGTTTGAAGATGACATTCACTCATCAATGGCCATGACTGCCCTTCAAGGCTTCAGAATCACCCCTCAAAACTCCATGGCCATCTCTTTTGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

234

Amino Acids

26.01

Weight (kDa)

9.18

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 247
AcoI	YGGCCR	2 cut(s)	630, 678
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	637
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	7 cut(s)	79, 139, 254, 538, 575, 608, 647
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	2 cut(s)	547, 583
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	6 cut(s)	134, 151, 284, 300, 341, 467
AluI	AGCT	6 cut(s)	134, 151, 284, 300, 341, 467
AoxI	GGCC	3 cut(s)	423, 630, 678
ApeKI	GCWGC	3 cut(s)	370, 461, 464
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	2 cut(s)	84, 305
AsuHPI	GGTGA	2 cut(s)	371, 652
AvaII	GGWCC	2 cut(s)	84, 305
BalI	TGGCCA	2 cut(s)	632, 680
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	382, 473, 476
BccI	CCATC	2 cut(s)	287, 689
BciT130I	CCWGG	2 cut(s)	549, 585
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	179, 513
BisI	GCNGC	3 cut(s)	371, 462, 465
BlsI	GCNGC	3 cut(s)	372, 463, 466
Bme1390I	CCNGG	2 cut(s)	549, 585
Bme18I	GGWCC	2 cut(s)	84, 305
BmgT120I	GGNCC	2 cut(s)	84, 305
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	549, 585
BmsI	GCATC	3 cut(s)	204, 277, 597
BpiI	GAAGAC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	547, 675
BsaWI	WCCGGW	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	549, 585
BseDI	CCNNGG	2 cut(s)	547, 675
BseGI	GGATG	2 cut(s)	130, 337
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	382, 473, 476
BshFI	GGCC	3 cut(s)	425, 632, 680
BsiSI	CCGG	1 cut(s)	565
BslFI	GGGAC	2 cut(s)	26, 70
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	26, 70
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	425, 632, 680
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	2 cut(s)	20, 247
BspANI	GGCC	3 cut(s)	425, 632, 680
BspLI	GGNNCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	547, 675
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	549, 585
Bst6I	CTCTTC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	2 cut(s)	130, 337
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 458, 529, 638
BstNI	CCWGG	2 cut(s)	549, 585
BstSCI	CCNGG	2 cut(s)	547, 583
BstV1I	GCAGC	3 cut(s)	382, 473, 476
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	425, 632, 680
BtgI	CCRYGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	130, 337
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	84, 305
CseI	GACGC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	6 cut(s)	165, 244, 455, 503, 634, 676
DdeI	CTNAG	1 cut(s)	301
EaeI	YGGCCR	2 cut(s)	630, 678
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	675
Eco147I	AGGCCT	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	84, 305
Eco57I	CTGAAG	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	547, 583
EcoT14I	CCWWGG	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	6 cut(s)	168, 247, 458, 506, 637, 679
FaqI	GGGAC	2 cut(s)	26, 70
FatI	CATG	6 cut(s)	164, 243, 454, 502, 633, 675
Fnu4HI	GCNGC	3 cut(s)	371, 462, 465
FokI	GGATG	2 cut(s)	137, 344
Fsp4HI	GCNGC	3 cut(s)	371, 462, 465
FspBI	CTAG	2 cut(s)	179, 513
GluI	GCNGC	3 cut(s)	371, 462, 465
HaeIII	GGCC	3 cut(s)	425, 632, 680
HapII	CCGG	1 cut(s)	565
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	168, 247, 458, 506, 637, 679
HindIII	AAGCTT	2 cut(s)	149, 298
HinfI	GANTC	2 cut(s)	250, 657
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	2 cut(s)	371, 652
Hpy188I	TCNGA	3 cut(s)	213, 274, 656
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	359, 653
HpyCH4V	TGCA	7 cut(s)	173, 217, 260, 279, 290, 395, 452
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 458, 529, 638
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	6 cut(s)	168, 247, 458, 506, 637, 679
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	3 cut(s)	382, 473, 476
LweI	GCATC	3 cut(s)	204, 277, 597
MaeI	CTAG	2 cut(s)	179, 513
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	83, 91, 151, 620
MlsI	TGGCCA	2 cut(s)	632, 680
MluCI	AATT	3 cut(s)	74, 493, 527
MluNI	TGGCCA	2 cut(s)	632, 680
MnlI	CCTC	6 cut(s)	59, 75, 350, 404, 436, 675
Mox20I	TGGCCA	2 cut(s)	632, 680
MscI	TGGCCA	2 cut(s)	632, 680
MseI	TTAA	1 cut(s)	42
Msp20I	TGGCCA	2 cut(s)	632, 680
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	549, 585
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	2 cut(s)	549, 585
MwoI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 458, 529, 638
NcoI	CCATGG	1 cut(s)	675
NlaIII	CATG	6 cut(s)	168, 247, 458, 506, 637, 679
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	425
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	250, 657
PkrI	GCNGC	3 cut(s)	372, 463, 466
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	547, 583
PspGI	CCWGG	2 cut(s)	547, 583
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	84, 305
PspPPI	RGGWCCY	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	371, 462, 465
Sau96I	GGNCC	2 cut(s)	84, 305
ScrFI	CCNGG	2 cut(s)	549, 585
SfaNI	GCATC	3 cut(s)	204, 277, 597
SinI	GGWCC	2 cut(s)	84, 305
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	3 cut(s)	74, 493, 527
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	2 cut(s)	20, 247
SspMI	CTAG	2 cut(s)	179, 513
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	547, 583
StyI	CCWWGG	1 cut(s)	675
TasI	AATT	3 cut(s)	74, 493, 527
TfiI	GAWTC	2 cut(s)	250, 657
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	370, 461, 464
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	378, 471, 475, 519
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	84, 305
XapI	RAATTY	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	2 cut(s)	179, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.