Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Reverse (-)

78165233 .. 78167946

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG491000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTTCAGGGGACATTCCACCAAACCAGACCATATACATTAAGAATCTCAATGAGAAAATCAAAAAAGAAGAATTGAAGAGGTCCCTCTATTGCTTATTCTCTCAGTATGGAAGGATTTTGGATGTTGTTGCCTTGAAGACACCCAAGCTTCGAGGGCAAGCATGGGTTGCATTTCTTGAAGTGACATCTGCCAGTAATGCTGTGCGCCAGATGCAGAACTTTCCGTTCTATGATAAACCCATGAGGATTCAATATGCAAAAACAAAGTCAGATTGCATTGCTAAAGTAGAAGGAAGTTTTGTTCCAAGAGATAAGAAAAGGAAGCAAGATGAAAGAGCTGCTGATAGAAAGCGGCGAACTGAAGAAGGGCCACAATCTGCTCCAGCAAATGGTGGAGCTACTGAAAATGGAGGCAGAACTACCTCATACCGCAGTGGTAATCCAAATGCAAACGAAACAGCAGCTCCTAACAATATTCTGTTCATAGAGAATTTGCCTCATGAAACCACTAGTGCAATGCTGGAACTGCTCTTCAAACAATACCCAGGGTTTAGGGAAGTTAGAATGATTGATGCAAAGCCAGGCATTGCCTTTGTAGAATTTGAAGACGACGTACAGTCATCCATGGCCATGCAGGCCCTTCAAGGCTTCAAAGTCACCCCGCAAAATCCCATGGGCATCAGTTTTGCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

26.22

Weight (kDa)

9.5

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 82	2.3e-08	RNA recognition motif
RRM_1	PF00076	161 - 220	3.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AciI	CCGC	3 cut(s)	355, 433, 665
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	493, 602
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	8 cut(s)	79, 139, 182, 254, 538, 608, 647, 655
AhdI	GACNNNNNGTC	1 cut(s)	619
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	2 cut(s)	547, 583
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	151, 341, 401, 467
AluI	AGCT	4 cut(s)	151, 341, 401, 467
AoxI	GGCC	3 cut(s)	371, 630, 639
ApeKI	GCWGC	2 cut(s)	341, 464
ApoI	RAATTY	2 cut(s)	493, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	84, 371, 640
AsuHPI	GGTGA	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbsI	GAAGAC	2 cut(s)	146, 615
BbvI	GCAGC	2 cut(s)	328, 476
BciT130I	CCWGG	2 cut(s)	549, 585
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	3 cut(s)	342, 356, 465
BlsI	GCNGC	3 cut(s)	343, 357, 466
Bme1390I	CCNGG	2 cut(s)	549, 585
Bme18I	GGWCC	1 cut(s)	84
BmeRI	GACNNNNNGTC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	84, 371, 640
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	549, 585
BmsI	GCATC	3 cut(s)	204, 565, 690
BpiI	GAAGAC	2 cut(s)	146, 615
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	4 cut(s)	547, 548, 627, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	3 cut(s)	279, 525, 588
BseBI	CCWGG	2 cut(s)	549, 585
BseDI	CCNNGG	4 cut(s)	547, 548, 627, 675
BseGI	GGATG	2 cut(s)	130, 623
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	3 cut(s)	279, 525, 588
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	328, 476
BshFI	GGCC	3 cut(s)	373, 632, 641
BslFI	GGGAC	2 cut(s)	26, 70
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	26, 70
BsnI	GGCC	3 cut(s)	373, 632, 641
Bsp19I	CCATGG	2 cut(s)	627, 675
BspACI	CCGC	3 cut(s)	355, 433, 665
BspANI	GGCC	3 cut(s)	373, 632, 641
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	539
BsrDI	GCAATG	3 cut(s)	279, 525, 588
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	4 cut(s)	547, 548, 627, 675
BssT1I	CCWWGG	2 cut(s)	627, 675
Bst2UI	CCWGG	2 cut(s)	549, 585
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	2 cut(s)	74, 539
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	162, 639
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	2 cut(s)	627, 675
BstF5I	GGATG	2 cut(s)	130, 623
BstHHI	GCGC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 529, 638
BstNI	CCWGG	2 cut(s)	549, 585
BstSCI	CCNGG	2 cut(s)	547, 583
BstV1I	GCAGC	2 cut(s)	328, 476
BstV2I	GAAGAC	2 cut(s)	146, 615
BsuRI	GGCC	3 cut(s)	373, 632, 641
BtgI	CCRYGG	2 cut(s)	627, 675
BtsCI	GGATG	2 cut(s)	130, 623
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	162, 639
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	84, 371, 640
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	6 cut(s)	165, 244, 503, 628, 634, 676
CviJI	RGCY	9 cut(s)	151, 341, 373, 401, 467, 583, 632, 641, 651
CviKI_1	RGCY	9 cut(s)	151, 341, 373, 401, 467, 583, 632, 641, 651
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	1 cut(s)	105
DriI	GACNNNNNGTC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	74, 539
Eam1105I	GACNNNNNGTC	1 cut(s)	619
EarI	CTCTTC	2 cut(s)	74, 539
Eco130I	CCWWGG	2 cut(s)	627, 675
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	84, 640
EcoRII	CCWGG	2 cut(s)	547, 583
EcoT14I	CCWWGG	2 cut(s)	627, 675
ErhI	CCWWGG	2 cut(s)	627, 675
FaeI	CATG	6 cut(s)	168, 247, 506, 631, 637, 679
FaqI	GGGAC	2 cut(s)	26, 70
FatI	CATG	6 cut(s)	164, 243, 502, 627, 633, 675
FauI	CCCGC	1 cut(s)	672
Fnu4HI	GCNGC	3 cut(s)	342, 356, 465
FokI	GGATG	2 cut(s)	137, 610
Fsp4HI	GCNGC	3 cut(s)	342, 356, 465
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	3 cut(s)	342, 356, 465
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	373, 632, 641
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	6 cut(s)	168, 247, 506, 631, 637, 679
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	46, 250
HphI	GGTGA	1 cut(s)	652
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	179, 503
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	4 cut(s)	108, 287, 362, 653
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	8 cut(s)	173, 217, 260, 279, 452, 518, 578, 637
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 529, 638
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	6 cut(s)	168, 247, 506, 631, 637, 679
HspAI	GCGC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	539
LmnI	GCTCC	3 cut(s)	388, 398, 472
Lsp1109I	GCAGC	2 cut(s)	328, 476
LweI	GCATC	3 cut(s)	204, 565, 690
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	184, 658
MboII	GAAGA	6 cut(s)	83, 91, 151, 377, 526, 620
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	3 cut(s)	74, 493, 602
MluNI	TGGCCA	1 cut(s)	632
MnlI	CCTC	7 cut(s)	75, 98, 149, 240, 407, 436, 510
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	632
MspR9I	CCNGG	2 cut(s)	549, 585
MvaI	CCWGG	2 cut(s)	549, 585
MwoI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 529, 638
NcoI	CCATGG	2 cut(s)	627, 675
NlaIII	CATG	6 cut(s)	168, 247, 506, 631, 637, 679
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	184, 658
PagI	TCATGA	1 cut(s)	502
PasI	CCCWGGG	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	46, 250
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	343, 357, 466
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	547, 583
PspGI	CCWGG	2 cut(s)	547, 583
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	3 cut(s)	84, 371, 640
PspPPI	RGGWCCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	342, 356, 465
Sau96I	GGNCC	3 cut(s)	84, 371, 640
ScrFI	CCNGG	2 cut(s)	549, 585
SetI	ASST	7 cut(s)	86, 153, 343, 403, 428, 469, 618
SfaNI	GCATC	3 cut(s)	204, 565, 690
SfiI	GGCCNNNNNGGCC	1 cut(s)	638
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	632
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	3 cut(s)	74, 493, 602
SsiI	CCGC	3 cut(s)	355, 433, 665
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	547, 583
StyI	CCWWGG	2 cut(s)	627, 675
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	154
TasI	AATT	3 cut(s)	74, 493, 602
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	46, 250
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	184, 658
TseI	GCWGC	2 cut(s)	341, 464
Tsp45I	GTSAC	2 cut(s)	184, 658
TspDTI	ATGAA	3 cut(s)	348, 475, 519
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	2 cut(s)	493, 602
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.