Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Forward (+)

4630849 .. 4633916

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1057700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTTCAGGGGACATTCCGCCTAACCAAACTATATACATTAAGAATCTCAACGAGAAAATCAAAAAAGAAGAATTGAAGAGGTCCCTCTATTGCTTATTCTCTCAATATGGCAGGATTTTGGATGTTGTTGCCTTGAAGACACCCAGGCTTCGGGGGCAAGCATGGGTTGCATTTCTAGAAGTGGCTTCTGCTAGTAATGCTGTGCGGCAGATGCAAAACTTTCCGTTTTATGATAAACCCATGCGGATTCAATACGCCAAAACAAAGTCAGATTGCATTGCTGAAGCAGAAGGAACCTTAGCTCCAAAAGAAAAGAAAAGGAAGCAGGAAGACAAAGCTGAAAGAAAGCGGCGAGGTGATGAAGGACAACAATATGCTACCGAAAATGGTGCAGCTGCTGAAAATGGAGGCAGAACGGCCCCGTCCCGCCATGGAAACTCGAATACACAGGAAGCTGCATCTCCAAACAATATCCTGTTCATTGAGAATTTGCCTCACGAAACTACCAGTGATATGCTGGAATTGCTCTTCAAACAGTTTGCAGGGTTTAGGGAAGTCAGGATGATTGATGCGAAGCCAGGCATTGCCTTTGTAGAGTATGAAGATGACATTCAGTCATCGGTCGCCATGCAGGCCCTTCAAGGCTTCAAAGTCACCCCTCAAAACGCCATCGCCATCACTTTTGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

26.09

Weight (kDa)

9.08

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 82	1.4e-08	RNA recognition motif
RRM_1	PF00076	160 - 219	8.3e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	20, 208, 247, 352, 430
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	6 cut(s)	79, 139, 254, 535, 644, 652
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	2 cut(s)	146, 580
AloI	GAACNNNNNNTCC	2 cut(s)	289, 321
AluBI	AGCT	4 cut(s)	305, 341, 398, 458
AluI	AGCT	4 cut(s)	305, 341, 398, 458
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	420, 636
ApeKI	GCWGC	3 cut(s)	395, 398, 458
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	84, 421, 637
AsuHPI	GGTGA	2 cut(s)	371, 649
AvaII	GGWCC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	146, 339
BbvI	GCAGC	3 cut(s)	385, 407, 445
BccI	CCATC	2 cut(s)	680, 686
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	2 cut(s)	148, 582
BfaI	CTAG	2 cut(s)	179, 195
BglI	GCCNNNNNGGC	1 cut(s)	635
BisI	GCNGC	5 cut(s)	209, 353, 396, 399, 459
BlsI	GCNGC	5 cut(s)	210, 354, 397, 400, 460
Bme1390I	CCNGG	2 cut(s)	148, 582
Bme18I	GGWCC	1 cut(s)	84
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmgT120I	GGNCC	3 cut(s)	84, 421, 637
BmiI	GGNNCC	3 cut(s)	86, 298, 423
BmrFI	CCNGG	2 cut(s)	148, 582
BmsI	GCATC	3 cut(s)	204, 470, 562
BpiI	GAAGAC	2 cut(s)	146, 339
Bpu10I	CCTNAGC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	146, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	279, 585
BseBI	CCWGG	2 cut(s)	148, 582
BseDI	CCNNGG	2 cut(s)	146, 433
BseGI	GGATG	2 cut(s)	130, 570
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	2 cut(s)	279, 585
BseNI	ACTGG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	385, 407, 445
BsgI	GTGCAG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	422, 638
BsiEI	CGRYCG	1 cut(s)	627
BslFI	GGGAC	3 cut(s)	26, 70, 412
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	3 cut(s)	26, 70, 412
BsnI	GGCC	2 cut(s)	422, 638
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	5 cut(s)	20, 208, 247, 352, 430
BspANI	GGCC	2 cut(s)	422, 638
BspLI	GGNNCC	3 cut(s)	86, 298, 423
BspQI	GCTCTTC	1 cut(s)	536
BsrDI	GCAATG	2 cut(s)	279, 585
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	146, 433
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	148, 582
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	74, 536
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	162, 636
BstDEI	CTNAG	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	2 cut(s)	130, 570
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 526, 635
BstNI	CCWGG	2 cut(s)	148, 582
BstSCI	CCNGG	2 cut(s)	146, 580
BstV1I	GCAGC	3 cut(s)	385, 407, 445
BstV2I	GAAGAC	2 cut(s)	146, 339
BsuRI	GGCC	2 cut(s)	422, 638
BtgI	CCRYGG	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	130, 570
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	162, 636
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	84, 421, 637
CviAII	CATG	4 cut(s)	165, 244, 434, 631
DdeI	CTNAG	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	74, 536
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	2 cut(s)	74, 536
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	84, 637
EcoRII	CCWGG	2 cut(s)	146, 580
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	4 cut(s)	168, 247, 437, 634
FaqI	GGGAC	3 cut(s)	26, 70, 412
FatI	CATG	4 cut(s)	164, 243, 433, 630
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	5 cut(s)	209, 353, 396, 399, 459
FokI	GGATG	2 cut(s)	137, 577
Fsp4HI	GCNGC	5 cut(s)	209, 353, 396, 399, 459
FspBI	CTAG	2 cut(s)	179, 195
GluI	GCNGC	5 cut(s)	209, 353, 396, 399, 459
HaeIII	GGCC	2 cut(s)	422, 638
Hin1II	CATG	4 cut(s)	168, 247, 437, 634
HinfI	GANTC	2 cut(s)	46, 250
HphI	GGTGA	2 cut(s)	371, 649
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	179, 500, 562
HpyAV	CCTTC	3 cut(s)	287, 359, 650
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	7 cut(s)	173, 217, 279, 395, 461, 545, 634
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 526, 635
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	168, 247, 437, 634
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	3 cut(s)	385, 407, 445
LweI	GCATC	3 cut(s)	204, 470, 562
MaeI	CTAG	2 cut(s)	179, 195
MaeIII	GTNAC	1 cut(s)	655
MboII	GAAGA	6 cut(s)	83, 91, 151, 344, 523, 617
MluCI	AATT	3 cut(s)	74, 490, 524
MnlI	CCTC	6 cut(s)	75, 98, 350, 404, 507, 672
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	148, 582
MvaI	CCWGG	2 cut(s)	148, 582
MwoI	GCNNNNNNNGC	6 cut(s)	157, 170, 200, 214, 526, 635
NcoI	CCATGG	1 cut(s)	433
NlaIII	CATG	4 cut(s)	168, 247, 437, 634
NlaIV	GGNNCC	3 cut(s)	86, 298, 423
NmuCI	GTSAC	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	46, 250
PkrI	GCNGC	5 cut(s)	210, 354, 397, 400, 460
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	146, 580
PspGI	CCWGG	2 cut(s)	146, 580
PspN4I	GGNNCC	3 cut(s)	86, 298, 423
PspPI	GGNCC	3 cut(s)	84, 421, 637
PspPPI	RGGWCCY	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	5 cut(s)	209, 353, 396, 399, 459
Sau96I	GGNCC	3 cut(s)	84, 421, 637
ScrFI	CCNGG	2 cut(s)	148, 582
SetI	ASST	7 cut(s)	86, 302, 307, 343, 361, 400, 460
SfaNI	GCATC	3 cut(s)	204, 470, 562
SinI	GGWCC	1 cut(s)	84
Sse9I	AATT	3 cut(s)	74, 490, 524
SsiI	CCGC	5 cut(s)	20, 208, 247, 352, 430
SspMI	CTAG	2 cut(s)	179, 195
StyD4I	CCNGG	2 cut(s)	146, 580
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	443
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	3 cut(s)	74, 490, 524
TauI	GCSGC	2 cut(s)	211, 355
TfiI	GAWTC	2 cut(s)	46, 250
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	395, 398, 458
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	3 cut(s)	378, 472, 618
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	1 cut(s)	490
XbaI	TCTAGA	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XspI	CTAG	2 cut(s)	179, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.