Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025243.1

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Reverse (-)

421 .. 2062

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggttctggttaactttgggtgcctattggatcttgaaactcgaggaaacaacaaattgaagaggtccctctattgcttattctctcagtatggaaggattttggatgttgttgccttgaagacacccaagcttcgagggcaagcatgggttgcatttcttgaagtgacatctgccagtaatgctgtgcgccaaatgcagaactttccgttctatgataaacccatggtgactgctgatagaaagcggcgaactgaagaagggccacaatctgctccagcaaatggtggagctactgaaaatggaggcagaactcagacctcataccgcagtggtaatccaaatgcaaacgaaacagcagctcctaacaatattctgttcatagagaatttgcctcatgaaaccactagtgcaatgctggaactgctcttcaaacaatacccagggtttagggaagttagaatgattgatgcaaagccaggcattgcctttgtagaatttgaagacgacgtacagtcatccatggccatgcaggcccttcaaggcttcaaagtcaccccgcaaaatcccatgggcatcagttttgccaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

198

Amino Acids

22.03

Weight (kDa)

9.12

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	284
AciI	CCGC	3 cut(s)	247, 328, 560
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	388, 497
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	8 cut(s)	38, 61, 121, 164, 433, 503, 542, 550
AhdI	GACNNNNNGTC	1 cut(s)	514
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	442, 478
AluBI	AGCT	3 cut(s)	133, 293, 362
AluI	AGCT	3 cut(s)	133, 293, 362
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	3 cut(s)	263, 525, 534
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	388, 497
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	66, 263, 535
AsuHPI	GGTGA	2 cut(s)	241, 547
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
BbsI	GAAGAC	2 cut(s)	128, 510
BbvI	GCAGC	1 cut(s)	371
BciT130I	CCWGG	2 cut(s)	444, 480
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	533
BisI	GCNGC	2 cut(s)	248, 360
BlsI	GCNGC	2 cut(s)	249, 361
Bme1390I	CCNGG	2 cut(s)	444, 480
Bme18I	GGWCC	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	66, 263, 535
BmiI	GGNNCC	2 cut(s)	23, 68
BmrFI	CCNGG	2 cut(s)	444, 480
BmsI	GCATC	2 cut(s)	460, 585
BpiI	GAAGAC	2 cut(s)	128, 510
BpmI	CTGGAG	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	225, 442, 443, 522, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	420, 483
BseBI	CCWGG	2 cut(s)	444, 480
BseDI	CCNNGG	5 cut(s)	225, 442, 443, 522, 570
BseGI	GGATG	2 cut(s)	112, 518
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	2 cut(s)	420, 483
BseMII	CTCAG	2 cut(s)	101, 329
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	371
BshFI	GGCC	3 cut(s)	265, 527, 536
BshNI	GGYRCC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	265, 527, 536
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	3 cut(s)	225, 522, 570
BspACI	CCGC	3 cut(s)	247, 328, 560
BspANI	GGCC	3 cut(s)	265, 527, 536
BspCNI	CTCAG	2 cut(s)	100, 328
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	23, 68
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	420, 483
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	5 cut(s)	225, 442, 443, 522, 570
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	3 cut(s)	225, 522, 570
Bst2UI	CCWGG	2 cut(s)	444, 480
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	2 cut(s)	56, 434
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	144, 534
BstDEI	CTNAG	2 cut(s)	87, 315
BstDSI	CCRYGG	3 cut(s)	225, 522, 570
BstF5I	GGATG	2 cut(s)	112, 518
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 152, 182, 196, 424, 533
BstNI	CCWGG	2 cut(s)	444, 480
BstSCI	CCNGG	2 cut(s)	442, 478
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	2 cut(s)	128, 510
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	265, 527, 536
BtgI	CCRYGG	3 cut(s)	225, 522, 570
BtsCI	GGATG	2 cut(s)	112, 518
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	144, 534
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	66, 263, 535
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	6 cut(s)	147, 226, 398, 523, 529, 571
CviJI	RGCY	8 cut(s)	133, 265, 293, 362, 478, 527, 536, 546
CviKI_1	RGCY	8 cut(s)	133, 265, 293, 362, 478, 527, 536, 546
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	2 cut(s)	87, 315
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DriI	GACNNNNNGTC	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	56, 434
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	2 cut(s)	56, 434
Eco130I	CCWWGG	3 cut(s)	225, 522, 570
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	66, 535
EcoRII	CCWGG	2 cut(s)	442, 478
EcoT14I	CCWWGG	3 cut(s)	225, 522, 570
ErhI	CCWWGG	3 cut(s)	225, 522, 570
FaeI	CATG	6 cut(s)	150, 229, 401, 526, 532, 574
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	6 cut(s)	146, 225, 397, 522, 528, 570
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	248, 360
FokI	GGATG	2 cut(s)	119, 505
Fsp4HI	GCNGC	2 cut(s)	248, 360
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	248, 360
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	265, 527, 536
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	150, 229, 401, 526, 532, 574
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	131
HpaI	GTTAAC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	241, 547
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	3 cut(s)	35, 161, 398
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	90, 254, 548
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	6 cut(s)	155, 199, 347, 413, 473, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 152, 182, 196, 424, 533
HpyF3I	CTNAG	2 cut(s)	87, 315
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	150, 229, 401, 526, 532, 574
HspAI	GCGC	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	280, 290, 367
LpnPI	CCDG	8 cut(s)	190, 291, 404, 429, 456, 465, 492, 518
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	2 cut(s)	460, 585
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	166, 229, 553
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	5 cut(s)	73, 133, 269, 421, 515
MflI	RGATCY	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	3 cut(s)	56, 388, 497
MluNI	TGGCCA	1 cut(s)	527
MnlI	CCTC	7 cut(s)	38, 57, 80, 131, 299, 331, 405
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	444, 480
MvaI	CCWGG	2 cut(s)	444, 480
MwoI	GCNNNNNNNGC	6 cut(s)	139, 152, 182, 196, 424, 533
NcoI	CCATGG	3 cut(s)	225, 522, 570
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	6 cut(s)	150, 229, 401, 526, 532, 574
NlaIV	GGNNCC	2 cut(s)	23, 68
NmuCI	GTSAC	3 cut(s)	166, 229, 553
PaeR7I	CTCGAG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	397
PasI	CCCWGGG	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	249, 361
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	442, 478
PspGI	CCWGG	2 cut(s)	442, 478
PspN4I	GGNNCC	2 cut(s)	23, 68
PspPI	GGNCC	3 cut(s)	66, 263, 535
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	248, 360
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	66, 263, 535
ScrFI	CCNGG	2 cut(s)	444, 480
SetI	ASST	6 cut(s)	68, 135, 295, 323, 364, 513
SfaNI	GCATC	2 cut(s)	460, 585
SfiI	GGCCNNNNNGGCC	1 cut(s)	533
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	3 cut(s)	56, 388, 497
SsiI	CCGC	3 cut(s)	247, 328, 560
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	442, 478
StyI	CCWWGG	3 cut(s)	225, 522, 570
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	43, 136
TasI	AATT	3 cut(s)	56, 388, 497
TauI	GCSGC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	3 cut(s)	166, 229, 553
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	3 cut(s)	166, 229, 553
TspDTI	ATGAA	2 cut(s)	370, 414
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	2 cut(s)	388, 497
XhoI	CTCGAG	1 cut(s)	42
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.