Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Forward (+)

5217793 .. 5220695

Gene Structure 2903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1060000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTTCAGGGGACATTCCACCGAACCAAACCATATACATTAAGAACCTCAACGAGAAAATCAAAAAAGAAGAATTGAAGAGGTCCCTCTATTGCTTATTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCCTTGAAGACACCCAGGCTTCGGGGGCAAGCATGGGTTGCATTTCTAGAAGTGGCTTCTGCCAGTAATGCTGTGCGGCAGATGCAAAACTTTCCGTTTTATGATAAACCCATGCGGATTCAATATGCCAAAACAAAGTCAGATTGCATTGCTGAAGCAGAAGGAACCTTAGCTCCAAAAGAAAAGAAAAGGAAGCAGGAAGACAAAGCTGAAAGAAAGCGGCGAGGTGATGAAGGGCAACAACCTGCTACCGAAAATGGTGCAGCTGCTGAAAATGGAGGCAGAACGGCCCCATCCCGCCATGGTAACTCAAATGCACAGGAAGCAGCAGCTCCGAACAATATTCTGTTCATTGAGAATTTGCCCCACGAAACCACTAGCGATATGCTTGAACTGCTCTTCAAACAGTTTGCAGGGTTTAGGGAAGTCAGGATGATTGATGCAAAGCCAGGCATCGCCTTTGTAGAGTATGAGGATGACATTCAGTCATCGATCGCCATGCAGGCCCTTCAAGGCTTCAAAGTCACCCCTCAAAATGCCGTTGCCATCACTTTTGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

25.98

Weight (kDa)

9.1

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 82	1.4e-08	RNA recognition motif
RRM_1	PF00076	160 - 219	2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AciI	CCGC	4 cut(s)	208, 247, 352, 430
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	7 cut(s)	79, 139, 254, 524, 535, 644, 652
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	2 cut(s)	146, 580
AloI	GAACNNNNNNTCC	2 cut(s)	289, 321
AluBI	AGCT	4 cut(s)	305, 341, 398, 464
AluI	AGCT	4 cut(s)	305, 341, 398, 464
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	420, 636
ApeKI	GCWGC	4 cut(s)	395, 398, 458, 461
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	84, 421, 637
AsuHPI	GGTGA	2 cut(s)	371, 649
AvaII	GGWCC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	146, 339
BbvI	GCAGC	4 cut(s)	385, 407, 470, 473
BccI	CCATC	2 cut(s)	433, 686
BceAI	ACGGC	2 cut(s)	435, 656
BcgI	CGANNNNNNTGC	4 cut(s)	374, 408, 613, 647
BciT130I	CCWGG	2 cut(s)	148, 582
BfaI	CTAG	2 cut(s)	179, 510
BfuAI	ACCTGC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	635
BisI	GCNGC	6 cut(s)	209, 353, 396, 399, 459, 462
BlsI	GCNGC	6 cut(s)	210, 354, 397, 400, 460, 463
Bme1390I	CCNGG	2 cut(s)	148, 582
Bme18I	GGWCC	1 cut(s)	84
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmgT120I	GGNCC	3 cut(s)	84, 421, 637
BmiI	GGNNCC	3 cut(s)	86, 298, 423
BmrFI	CCNGG	2 cut(s)	148, 582
BmsI	GCATC	3 cut(s)	204, 562, 594
BpiI	GAAGAC	2 cut(s)	146, 339
Bpu10I	CCTNAGC	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	146, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	148, 582
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	146, 433
BseGI	GGATG	4 cut(s)	130, 425, 570, 613
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	385, 407, 470, 473
BsgI	GTGCAG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	422, 638
BshVI	ATCGAT	1 cut(s)	623
BsiEI	CGRYCG	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	26, 70
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	26, 70
BsnI	GGCC	2 cut(s)	422, 638
Bsp143I	GATC	1 cut(s)	624
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	4 cut(s)	208, 247, 352, 430
BspANI	GGCC	2 cut(s)	422, 638
BspDI	ATCGAT	1 cut(s)	623
BspLI	GGNNCC	3 cut(s)	86, 298, 423
BspMI	ACCTGC	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	146, 433
BssMI	GATC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	148, 582
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	74, 536
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	162, 636
BstDEI	CTNAG	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	130, 425, 570, 613
BstKTI	GATC	1 cut(s)	627
BstMBI	GATC	1 cut(s)	624
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 455, 526, 635
BstNI	CCWGG	2 cut(s)	148, 582
BstSCI	CCNGG	2 cut(s)	146, 580
BstV1I	GCAGC	4 cut(s)	385, 407, 470, 473
BstV2I	GAAGAC	2 cut(s)	146, 339
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	422, 638
BsuTUI	ATCGAT	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	571
BtsCI	GGATG	4 cut(s)	130, 425, 570, 613
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	162, 636
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	84, 421, 637
ClaI	ATCGAT	1 cut(s)	623
CviAII	CATG	4 cut(s)	165, 244, 434, 631
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	74, 536
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	2 cut(s)	74, 536
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	84, 637
EcoRII	CCWGG	2 cut(s)	146, 580
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	4 cut(s)	168, 247, 437, 634
FaqI	GGGAC	2 cut(s)	26, 70
FatI	CATG	4 cut(s)	164, 243, 433, 630
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	6 cut(s)	209, 353, 396, 399, 459, 462
FokI	GGATG	4 cut(s)	137, 412, 577, 620
Fsp4HI	GCNGC	6 cut(s)	209, 353, 396, 399, 459, 462
FspBI	CTAG	2 cut(s)	179, 510
GluI	GCNGC	6 cut(s)	209, 353, 396, 399, 459, 462
HaeIII	GGCC	2 cut(s)	422, 638
Hin1II	CATG	4 cut(s)	168, 247, 437, 634
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	2 cut(s)	371, 649
Hpy188I	TCNGA	2 cut(s)	274, 468
Hpy188III	TCNNGA	2 cut(s)	179, 562
HpyAV	CCTTC	4 cut(s)	108, 287, 359, 650
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	8 cut(s)	173, 217, 279, 395, 449, 545, 575, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 455, 526, 635
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	168, 247, 437, 634
Kzo9I	GATC	1 cut(s)	624
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	310, 469
Lsp1109I	GCAGC	4 cut(s)	385, 407, 470, 473
LweI	GCATC	3 cut(s)	204, 562, 594
MaeI	CTAG	2 cut(s)	179, 510
MaeIII	GTNAC	2 cut(s)	437, 655
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	5 cut(s)	83, 91, 151, 344, 523
MluCI	AATT	2 cut(s)	74, 490
MnlI	CCTC	7 cut(s)	59, 75, 98, 350, 404, 598, 672
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	148, 582
MvaI	CCWGG	2 cut(s)	148, 582
MwoI	GCNNNNNNNGC	7 cut(s)	157, 170, 200, 214, 455, 526, 635
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	4 cut(s)	168, 247, 437, 634
NlaIV	GGNNCC	3 cut(s)	86, 298, 423
NmuCI	GTSAC	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	6 cut(s)	210, 354, 397, 400, 460, 463
Ple19I	CGATCG	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	146, 580
PspGI	CCWGG	2 cut(s)	146, 580
PspN4I	GGNNCC	3 cut(s)	86, 298, 423
PspPI	GGNCC	3 cut(s)	84, 421, 637
PspPPI	RGGWCCY	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	6 cut(s)	209, 353, 396, 399, 459, 462
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	3 cut(s)	84, 421, 637
ScrFI	CCNGG	2 cut(s)	148, 582
SetI	ASST	9 cut(s)	51, 86, 302, 307, 343, 361, 379, 400, 466
SfaNI	GCATC	3 cut(s)	204, 562, 594
SinI	GGWCC	1 cut(s)	84
Sse9I	AATT	2 cut(s)	74, 490
SsiI	CCGC	4 cut(s)	208, 247, 352, 430
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	179, 510
StyD4I	CCNGG	2 cut(s)	146, 580
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	623
TasI	AATT	2 cut(s)	74, 490
TauI	GCSGC	2 cut(s)	211, 355
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	4 cut(s)	395, 398, 458, 461
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	2 cut(s)	378, 472
TspGWI	ACGGA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	1 cut(s)	490
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	2 cut(s)	179, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.