Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Reverse (-)

33795381 .. 33797757

Gene Structure 2377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTTCCGGGGACATACCACCGAACCAGACCATATACATTAAGAATCTGAACGAGAAAGTCAAAAAAGAAGAATTGAAGAGGTCTCTCTATTGCTTGTTCTCTCAGTATGGAAAGATCTTGGATGTTGTCGCATTGAAGACACCCAAGCTCCGAGGGCAAGCATGGGTTGCATTTCTTGAAGTGACATCTGCCAGCAATGCTGTGCGGCAGATGCAGAATTTTCCGTTCTATGATAAACCCATGAGGATTCAATATGCAAAAACAAAGTCAGACTGCATCGCCAAAGAAGAAGGAAGCTTTGTTCCAAGAGATAAGAAAAGGAAGCAAGAAGAAAGAGCTGCTGATAGAAAGCGGCGAACTGAAGAAGGGCCACAATCTGCTCCAGCAAATGGTGGAGCTACTGAAAATGGAGTTAGAACCAGCTCATACCGCAATGGTCATCCAAATGCAAAAGAAACAGCTGCTCCAAATAACATTCTGTTCATAGAGAATTTGCCCTATGAAACCACTAGCGATATGCTGGAAGTACTCTTCAAACAATTCCCAGGATTTAAGGAAGTTCGAATGATTGATGCAAAGCCAGGCATTGCCTTTGTAGAATATGAAGACGACATACAGTCATCCATGGCCATGCAGTCCCTTCAAGGCTTCAAAGTCACCCCTCAAAGTCCCATCACCATCAGTTTTGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

234

Amino Acids

26.37

Weight (kDa)

9.34

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	12 - 82	1.2e-08	RNA recognition motif
RRM_1	PF00076	161 - 220	1.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AciI	CCGC	3 cut(s)	208, 355, 433
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	220, 493
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	7 cut(s)	79, 139, 182, 254, 538, 647, 655
AhdI	GACNNNNNGTC	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	547, 583
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	6 cut(s)	151, 300, 341, 401, 426, 464
AluI	AGCT	6 cut(s)	151, 300, 341, 401, 426, 464
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	2 cut(s)	371, 630
ApeKI	GCWGC	2 cut(s)	341, 464
ApoI	RAATTY	2 cut(s)	220, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	652, 670
AsuII	TTCGAA	1 cut(s)	565
BalI	TGGCCA	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbsI	GAAGAC	2 cut(s)	146, 615
BbvI	GCAGC	2 cut(s)	328, 451
BccI	CCATC	2 cut(s)	683, 689
BciT130I	CCWGG	2 cut(s)	549, 585
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	4 cut(s)	209, 342, 356, 465
BlsI	GCNGC	4 cut(s)	210, 343, 357, 466
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	10, 549, 585
BmeRI	GACNNNNNGTC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	371
BmrFI	CCNGG	3 cut(s)	10, 549, 585
BmsI	GCATC	3 cut(s)	204, 288, 565
BpiI	GAAGAC	2 cut(s)	146, 615
BpmI	CTGGAG	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	565
BpuMI	CCSGG	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	9, 154, 547, 627
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse3DI	GCAATG	3 cut(s)	205, 442, 588
BseBI	CCWGG	2 cut(s)	549, 585
BseDI	CCNNGG	4 cut(s)	9, 154, 547, 627
BseGI	GGATG	3 cut(s)	130, 442, 623
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	3 cut(s)	205, 442, 588
BseMII	CTCAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	328, 451
BshFI	GGCC	2 cut(s)	373, 632
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	26, 625, 657
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	26, 625, 657
BsnI	GGCC	2 cut(s)	373, 632
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	565
Bsp143I	GATC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	3 cut(s)	208, 355, 433
BspANI	GGCC	2 cut(s)	373, 632
BspCNI	CTCAG	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	3 cut(s)	205, 442, 588
BssECI	CCNNGG	4 cut(s)	9, 154, 547, 627
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	549, 585
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	2 cut(s)	74, 539
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	162, 196
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	130, 442, 623
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 170, 200, 214, 432
BstNI	CCWGG	2 cut(s)	549, 585
BstSCI	CCNGG	3 cut(s)	8, 547, 583
BstV1I	GCAGC	2 cut(s)	328, 451
BstV2I	GAAGAC	2 cut(s)	146, 615
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	373, 632
BtgI	CCRYGG	1 cut(s)	627
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	130, 442, 623
Cac8I	GCNNGC	2 cut(s)	162, 196
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	4 cut(s)	165, 244, 628, 634
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DriI	GACNNNNNGTC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	74, 539
Eam1105I	GACNNNNNGTC	1 cut(s)	619
EarI	CTCTTC	2 cut(s)	74, 539
Eco130I	CCWWGG	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	547, 583
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	4 cut(s)	168, 247, 631, 637
FaqI	GGGAC	3 cut(s)	26, 625, 657
FatI	CATG	4 cut(s)	164, 243, 627, 633
Fnu4HI	GCNGC	4 cut(s)	209, 342, 356, 465
FokI	GGATG	3 cut(s)	137, 429, 610
Fsp4HI	GCNGC	4 cut(s)	209, 342, 356, 465
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	4 cut(s)	209, 342, 356, 465
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	373, 632
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	4 cut(s)	168, 247, 631, 637
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	2 cut(s)	46, 250
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	652, 670
Hpy188I	TCNGA	3 cut(s)	51, 155, 274
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	287, 362, 653
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4V	TGCA	7 cut(s)	173, 217, 260, 279, 452, 578, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 170, 200, 214, 432
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	168, 247, 631, 637
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	4 cut(s)	156, 388, 398, 472
Lsp1109I	GCAGC	2 cut(s)	328, 451
LweI	GCATC	3 cut(s)	204, 288, 565
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	184, 658
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	8 cut(s)	83, 91, 151, 302, 344, 377, 526, 620
MflI	RGATCY	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	4 cut(s)	74, 220, 493, 542
MluNI	TGGCCA	1 cut(s)	632
MnlI	CCTC	4 cut(s)	75, 149, 240, 675
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	2 cut(s)	42, 555
MslI	CAYNNNNRTG	2 cut(s)	447, 632
Msp20I	TGGCCA	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 549, 585
MvaI	CCWGG	2 cut(s)	549, 585
MwoI	GCNNNNNNNGC	5 cut(s)	157, 170, 200, 214, 432
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	4 cut(s)	168, 247, 631, 637
NmuCI	GTSAC	2 cut(s)	184, 658
NspV	TTCGAA	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	46, 250
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	210, 343, 357, 466
Psp6I	CCWGG	2 cut(s)	547, 583
PspGI	CCWGG	2 cut(s)	547, 583
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	2 cut(s)	447, 632
SaqAI	TTAA	2 cut(s)	42, 555
SatI	GCNGC	4 cut(s)	209, 342, 356, 465
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	371
ScaI	AGTACT	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	10, 549, 585
SetI	ASST	7 cut(s)	86, 153, 302, 343, 403, 428, 466
SfaNI	GCATC	3 cut(s)	204, 288, 565
SfuI	TTCGAA	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	447, 632
Sse9I	AATT	4 cut(s)	74, 220, 493, 542
SsiI	CCGC	3 cut(s)	208, 355, 433
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	8, 547, 583
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	565
TasI	AATT	4 cut(s)	74, 220, 493, 542
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	2 cut(s)	211, 358
TfiI	GAWTC	2 cut(s)	46, 250
Tru1I	TTAA	2 cut(s)	42, 555
Tru9I	TTAA	2 cut(s)	42, 555
TseFI	GTSAC	2 cut(s)	184, 658
TseI	GCWGC	2 cut(s)	341, 464
Tsp45I	GTSAC	2 cut(s)	184, 658
TspDTI	ATGAA	3 cut(s)	475, 519, 621
TspGWI	ACGGA	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	220, 493
XspI	CTAG	1 cut(s)	513
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.