AT2G30880

Pleckstrin homology domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012240
Physical Location & Seq
Reverse (-)
13142665 .. 13146060
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30880.2

Sequence Viewer

Length: 1515 bp
ATGGCTTCCAACGGCGCTTCTCCGAGAATTGTTGATGCTACTGAGAACAGCTTGGATAAGATCAAGCGACAATTGGCATCTGGCTCTGGTCGGAACTTGCTACAAGGACCTCTTTTCAAGCGATCTGAAACTCTGAGAAAATGGAACGAACGATGGGTGATACTTGATCCAACAACAGGGAAAATGGAGTATAAGACGAGGCGAAATGAGCCAACTATCAAGGGAACAATTTTGTTTGACGAAAATAGCACAATCTCCATCTCTCCTGTCAACTTCCAGGGGCTTCCAAAATATAATGGTTGCTGTATTTATATTGGTACCCCACAGAAGAAAGATTACTTTTTGTGTGCAGAGACTCCTGGTGCAGCTAAAGCTTGGGTCACAACCTTACATGCGACACAGCTAGTTCTAAAGGCCCATAAGGAGGCTGTCGAATCTCTAAGTGGAAGTGGTTCTGCAACACTTGGTACCGTTGCAACCGTTGTTGCCGCTGCCAATTCAACAGCATTGGAATGTTCCAGAGAAATTCAAGCAGCAATGCAGATCTCTTTGAGGAATGCATTGAAAATAACGCCAAATAAACCGATTGATGGACCACTAGATGATTTGACAATAATGAAGGAAACTCTGCGTGTCAAAGATGAAGAATTACATAATTTAGCCAGGGAACTTCGTTCTCGTGACTCAATGATAAAGGAAATAGCAGATAAGCTATCTGAGACTGCTGAAGCAGCTGTAGCTGCAGCATCTGCTGCTCATACAATGGATGAACAAAGGAAAATCGTTTGTGTGGAATTTGAGCGCTTGACTACAGACTCACAGAGACAGCAAGAAGCCACAAAATTAAAGCTCAAGGAATTGGAAGAGAAGACCTTTACTTTGAGTAAGGAAAAAGATCAATTGGTTAAGGAAAGAGACGCTGCTCTCCAAGAGGCACATATGTGGCGGTCTGAGCTTGGGAAAGCCAGAGAGCGTGTTGTCATACTTGAAGGAGCTGTTGTGAGGGCCGAAGAGAAAGTGAGGGTTGCAGAAGCAAGCGGTGAAGCAAAATCAAAAGAGGCTTCTCAGAGAGAAGCAACTGCTTGGACAGAGAAGCAAGAGCTTTTAGCATATGTGAATATGTTACAAACTCAGCTTCAAAGGCAGCAACTAGAGACAAAGCAAGTGTGTGAGGAGAAGACTGAGTCTACTAACGGCGAAGCTTCTCTTCCAATGACAAAGGAAACAGAAAAGAATGTGGATAAAGCATGTCTGAGCATTTCAAGAACAGCCTCTATACCGGGAGAGAATGTAGTCCATATGAGTGAAGAGCAGGTAGTAAACGCTCAGCCTCCGGTGGGAGAAAACGAATGGAATGATATTCAGGCAACAGAGGCAAGAGTTTCTGATGTAAGAGAAATATCTGCAGAGACTGAACGGGACAGAAGAAACAGCTTGGATATCCCGGTAGTGTCTCCTGAACCTAACGTTCCACGCAATGATCCGCCTTCCGAATCATTTCATCACCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

504

Amino Acids

56.02

Weight (kDa)

5.67

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 34 - 132 6.8e-07 PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1303
Acc65I GGTACC 2 cut(s) 317, 467
AccB1I GGYRCC 2 cut(s) 317, 467
AccI GTMKAC 1 cut(s) 1187
AciI CCGC 4 cut(s) 489, 946, 1038, 1484
AclI AACGTT 1 cut(s) 1467
AclWI GGATC 2 cut(s) 161, 1475
AcsI RAATTY 2 cut(s) 525, 794
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 2 cut(s) 319, 469
AfeI AGCGCT 1 cut(s) 803
AfiI CCNNNNNNNGG 4 cut(s) 176, 424, 590, 1337
AgsI TTSAA 7 cut(s) 118, 501, 530, 565, 989, 1139, 1263
AjnI CCWGG 3 cut(s) 276, 358, 662
AleI CACNNNNGTG 1 cut(s) 940
Alw26I GTCTC 7 cut(s) 347, 713, 817, 909, 1148, 1403, 1458
AlwI GGATC 2 cut(s) 161, 1475
AlwNI CAGNNNCTG 2 cut(s) 749, 1412
Aor51HI AGCGCT 1 cut(s) 803
AoxI GGCC 2 cut(s) 414, 1005
ApeKI GCWGC 9 cut(s) 365, 491, 533, 731, 740, 743, 752, 920, 1144
ApoI RAATTY 2 cut(s) 525, 794
ArsI GACNNNNNNTTYG 2 cut(s) 862, 894
Asp700I GAANNNNTTC 2 cut(s) 451, 1497
Asp718I GGTACC 2 cut(s) 317, 467
AspLEI GCGC 2 cut(s) 17, 804
AspS9I GGNCC 4 cut(s) 107, 415, 593, 1005
AsuC2I CCSGG 2 cut(s) 1281, 1445
AsuHPI GGTGA 3 cut(s) 169, 1052, 1496
AvaII GGWCC 2 cut(s) 107, 593
BanI GGYRCC 2 cut(s) 317, 467
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 2 cut(s) 875, 1184
BbvI GCAGC 9 cut(s) 377, 478, 545, 727, 739, 743, 755, 907, 1156
BccI CCATC 3 cut(s) 147, 266, 584
BceAI ACGGC 2 cut(s) 28, 1210
BciT130I CCWGG 3 cut(s) 278, 360, 664
BcnI CCSGG 2 cut(s) 1281, 1445
BcoDI GTCTC 7 cut(s) 347, 713, 817, 909, 1148, 1403, 1458
BfaI CTAG 3 cut(s) 404, 599, 1151
BfmI CTRYAG 4 cut(s) 735, 741, 810, 1404
BfoI RGCGCY 2 cut(s) 18, 805
BfuAI ACCTGC 1 cut(s) 1303
BglII AGATCT 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 1326
Bme1390I CCNGG 5 cut(s) 278, 360, 664, 1281, 1445
Bme18I GGWCC 2 cut(s) 107, 593
BmgT120I GGNCC 4 cut(s) 107, 415, 593, 1005
BmiI GGNNCC 2 cut(s) 319, 469
BmrFI CCNGG 5 cut(s) 278, 360, 664, 1281, 1445
BmsI GCATC 3 cut(s) 25, 86, 755
BpiI GAAGAC 2 cut(s) 875, 1184
Bpu1102I GCTNAGC 1 cut(s) 1326
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 2 cut(s) 1281, 1445
BsaJI CCNNGG 2 cut(s) 277, 663
BsaWI WCCGGW 1 cut(s) 1333
BsaXI ACNNNNNCTCC 4 cut(s) 984, 1014, 1275, 1305
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 424, 590, 1337
Bse3DI GCAATG 2 cut(s) 543, 1483
BseBI CCWGG 3 cut(s) 278, 360, 664
BseDI CCNNGG 2 cut(s) 277, 663
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 4 cut(s) 176, 424, 590, 1337
BseMI GCAATG 2 cut(s) 543, 1483
BseMII CTCAG 9 cut(s) 33, 125, 708, 942, 1079, 1145, 1173, 1244, 1340
BseRI GAGGAG 1 cut(s) 1187
BseXI GCAGC 9 cut(s) 377, 478, 545, 727, 739, 743, 755, 907, 1156
BsgI GTGCAG 2 cut(s) 369, 384
BshFI GGCC 2 cut(s) 416, 1007
BshNI GGYRCC 2 cut(s) 317, 467
BsiSI CCGG 3 cut(s) 1280, 1334, 1445
BslFI GGGAC 1 cut(s) 1433
BslI CCNNNNNNNGG 4 cut(s) 176, 424, 590, 1337
BsmAI GTCTC 7 cut(s) 347, 713, 817, 909, 1148, 1403, 1458
BsmBI CGTCTC 1 cut(s) 909
BsmFI GGGAC 1 cut(s) 1433
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 416, 1007
Bsp143I GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
Bsp1720I GCTNAGC 1 cut(s) 1326
BspACI CCGC 4 cut(s) 489, 946, 1038, 1484
BspANI GGCC 2 cut(s) 416, 1007
BspCNI CTCAG 9 cut(s) 34, 126, 709, 943, 1078, 1144, 1174, 1245, 1339
BspLI GGNNCC 2 cut(s) 319, 469
BspMAI CTGCAG 2 cut(s) 745, 1408
BspMI ACCTGC 1 cut(s) 1303
BspPI GGATC 2 cut(s) 161, 1475
BspQI GCTCTTC 1 cut(s) 1302
BspT107I GGYRCC 2 cut(s) 317, 467
BsrDI GCAATG 2 cut(s) 543, 1483
BssECI CCNNGG 2 cut(s) 277, 663
BssMI GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
BssSI CACGAG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 3 cut(s) 278, 360, 664
Bst4CI ACNGT 2 cut(s) 472, 481
Bst6I CTCTTC 4 cut(s) 858, 1005, 1212, 1302
BstAPI GCANNNNNTGC 2 cut(s) 749, 752
BstC8I GCNNGC 1 cut(s) 1036
BstF5I GGATG 1 cut(s) 772
BstH2I RGCGCY 2 cut(s) 18, 805
BstHHI GCGC 2 cut(s) 17, 804
BstKTI GATC 6 cut(s) 63, 125, 169, 546, 898, 1483
BstMAI GTCTC 7 cut(s) 347, 713, 817, 909, 1148, 1403, 1458
BstMBI GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
BstNI CCWGG 3 cut(s) 278, 360, 664
BstNSI RCATGY 2 cut(s) 395, 1251
BstSCI CCNGG 5 cut(s) 276, 358, 662, 1279, 1443
BstSFI CTRYAG 4 cut(s) 735, 741, 810, 1404
BstV1I GCAGC 9 cut(s) 377, 478, 545, 727, 739, 743, 755, 907, 1156
BstV2I GAAGAC 2 cut(s) 875, 1184
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 2 cut(s) 416, 1007
BtsCI GGATG 1 cut(s) 772
BveI ACCTGC 1 cut(s) 1303
Cac8I GCNNGC 1 cut(s) 1036
CaiI CAGNNNCTG 2 cut(s) 749, 1412
CfoI GCGC 2 cut(s) 17, 804
Cfr13I GGNCC 4 cut(s) 107, 415, 593, 1005
CseI GACGC 1 cut(s) 926
Csp6I GTAC 2 cut(s) 318, 468
CviAII CATG 2 cut(s) 392, 1248
CviQI GTAC 2 cut(s) 318, 468
DpnI GATC 6 cut(s) 62, 124, 168, 545, 897, 1482
DpnII GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
Eam1104I CTCTTC 4 cut(s) 858, 1005, 1212, 1302
EarI CTCTTC 4 cut(s) 858, 1005, 1212, 1302
EciI GGCGGA 1 cut(s) 1473
Eco32I GATATC 1 cut(s) 1441
Eco47I GGWCC 2 cut(s) 107, 593
Eco47III AGCGCT 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 276, 358, 662
EcoRV GATATC 1 cut(s) 1441
EcoT22I ATGCAT 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 909
FaeI CATG 2 cut(s) 395, 1251
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 1191, 1223
FaqI GGGAC 1 cut(s) 1433
FatI CATG 2 cut(s) 391, 1247
FauNDI CATATG 3 cut(s) 939, 1111, 1299
FblI GTMKAC 1 cut(s) 1187
FokI GGATG 1 cut(s) 779
FspBI CTAG 3 cut(s) 404, 599, 1151
GlaI GCGC 2 cut(s) 16, 803
HaeII RGCGCY 2 cut(s) 18, 805
HaeIII GGCC 2 cut(s) 416, 1007
HapII CCGG 3 cut(s) 1280, 1334, 1445
HgaI GACGC 1 cut(s) 926
HhaI GCGC 2 cut(s) 17, 804
Hin1II CATG 2 cut(s) 395, 1251
Hin6I GCGC 2 cut(s) 15, 802
HinP1I GCGC 2 cut(s) 15, 802
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 372, 1200
HinfI GANTC 6 cut(s) 355, 434, 683, 815, 1184, 1493
HpaII CCGG 3 cut(s) 1280, 1334, 1445
HphI GGTGA 3 cut(s) 169, 1052, 1496
Hpy166II GTNNAC 3 cut(s) 271, 1188, 1321
Hpy188III TCNNGA 4 cut(s) 519, 680, 1263, 1457
Hpy8I GTNNAC 3 cut(s) 271, 1188, 1321
HpyAV CCTTC 3 cut(s) 613, 983, 1497
HpyCH4III ACNGT 2 cut(s) 472, 481
HpyCH4IV ACGT 1 cut(s) 1467
HpyCH4V TGCA 9 cut(s) 350, 365, 458, 476, 541, 560, 743, 1028, 1406
HpySE526I ACGT 1 cut(s) 1467
Hsp92II CATG 2 cut(s) 395, 1251
HspAI GCGC 2 cut(s) 15, 802
KpnI GGTACC 2 cut(s) 321, 471
Kzo9I GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
LguI GCTCTTC 1 cut(s) 1302
LmnI GCTCC 1 cut(s) 992
Lsp1109I GCAGC 9 cut(s) 377, 478, 545, 727, 739, 743, 755, 907, 1156
LweI GCATC 3 cut(s) 25, 86, 755
MaeI CTAG 3 cut(s) 404, 599, 1151
MaeII ACGT 1 cut(s) 1467
MaeIII GTNAC 3 cut(s) 379, 680, 1122
MalI GATC 6 cut(s) 62, 124, 168, 545, 897, 1482
MboI GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
MboII GAAGA 9 cut(s) 340, 656, 875, 880, 1022, 1189, 1199, 1319, 1437
MfeI CAATTG 2 cut(s) 71, 899
MflI RGATCY 1 cut(s) 543
MlyI GAGTC 4 cut(s) 349, 677, 809, 1193
MmeI TCCRAC 3 cut(s) 33, 71, 194
Mph1103I ATGCAT 1 cut(s) 562
MroXI GAANNNNTTC 2 cut(s) 451, 1497
MseI TTAA 2 cut(s) 845, 906
MslI CAYNNNNRTG 3 cut(s) 511, 940, 1302
MspA1I CMGCKG 2 cut(s) 491, 734
MspI CCGG 3 cut(s) 1280, 1334, 1445
MspR9I CCNGG 5 cut(s) 278, 360, 664, 1281, 1445
MunI CAATTG 2 cut(s) 71, 899
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 3 cut(s) 278, 360, 664
NciI CCSGG 2 cut(s) 1281, 1445
NdeI CATATG 3 cut(s) 939, 1111, 1299
NdeII GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
NlaIII CATG 2 cut(s) 395, 1251
NlaIV GGNNCC 2 cut(s) 319, 469
NmuCI GTSAC 2 cut(s) 379, 680
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 2 cut(s) 395, 1251
OliI CACNNNNGTG 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 1302
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 2 cut(s) 451, 1497
PfeI GAWTC 2 cut(s) 434, 1493
PflFI GACNNNGTC 1 cut(s) 1183
PleI GAGTC 4 cut(s) 349, 677, 809, 1192
PpsI GAGTC 4 cut(s) 349, 677, 809, 1192
PpuMI RGGWCCY 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 1467
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 3 cut(s) 276, 358, 662
PspGI CCWGG 3 cut(s) 276, 358, 662
PspN4I GGNNCC 2 cut(s) 319, 469
PspPI GGNCC 4 cut(s) 107, 415, 593, 1005
PspPPI RGGWCCY 1 cut(s) 107
PstI CTGCAG 2 cut(s) 745, 1408
PstNI CAGNNNCTG 2 cut(s) 749, 1412
PsuI RGATCY 1 cut(s) 543
PsyI GACNNNGTC 1 cut(s) 1183
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 319, 469
RsaNI GTAC 2 cut(s) 318, 468
RseI CAYNNNNRTG 3 cut(s) 511, 940, 1302
SapI GCTCTTC 1 cut(s) 1302
SaqAI TTAA 2 cut(s) 845, 906
Sau3AI GATC 6 cut(s) 60, 122, 166, 543, 895, 1480
Sau96I GGNCC 4 cut(s) 107, 415, 593, 1005
SchI GAGTC 4 cut(s) 349, 677, 809, 1193
ScrFI CCNGG 5 cut(s) 278, 360, 664, 1281, 1445
SfaNI GCATC 3 cut(s) 25, 86, 755
SfcI CTRYAG 4 cut(s) 735, 741, 810, 1404
SinI GGWCC 2 cut(s) 107, 593
SmiMI CAYNNNNRTG 3 cut(s) 511, 940, 1302
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SsiI CCGC 4 cut(s) 489, 946, 1038, 1484
SspMI CTAG 3 cut(s) 404, 599, 1151
StyD4I CCNGG 5 cut(s) 276, 358, 662, 1279, 1443
TaaI ACNGT 2 cut(s) 472, 481
TaiI ACGT 1 cut(s) 1470
TaqI TCGA 1 cut(s) 432
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 2 cut(s) 434, 1493
Tru1I TTAA 2 cut(s) 845, 906
Tru9I TTAA 2 cut(s) 845, 906
TseFI GTSAC 2 cut(s) 379, 680
TseI GCWGC 9 cut(s) 365, 491, 533, 731, 740, 743, 752, 920, 1144
Tsp45I GTSAC 2 cut(s) 379, 680
TspDTI ATGAA 4 cut(s) 632, 657, 783, 1490
Tth111I GACNNNGTC 1 cut(s) 1183
VpaK11BI GGWCC 2 cut(s) 107, 593
XapI RAATTY 2 cut(s) 525, 794
XceI RCATGY 2 cut(s) 395, 1251
XmiI GTMKAC 1 cut(s) 1187
XmnI GAANNNNTTC 2 cut(s) 451, 1497
XspI CTAG 3 cut(s) 404, 599, 1151
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.