Rmu_co8360207.1_g000001

Pleckstrin homology domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8360207.1
OG0012240
Physical Location & Seq
Reverse (-)
531 .. 878
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8360207.1_g000001.1.cds

Sequence Viewer

Length: 348 bp
atgaagcaagtgtttgaggagaagtcagagtcttgctcagatattggcaatagacccctgacaaaacatgtagacttatctgcggaaaatgttgataaagcatgcctcagtgtttctagatcggttccagtaccagctgagagtgtagttcacatggcaggggatcaggccaacttccggccagttggagatggtgagtggagtgatattcaggctacagagtcgaggatagctgatgtaagagaaatcgcccccgagtcagaagcaagcagcttagatattcctgttgttagccaaccagttggtaaccatcatgatcaagggggaaactcttttcaacagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

4.6

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 179
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 3 cut(s) 137, 233, 273
AluI AGCT 3 cut(s) 137, 233, 273
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 2 cut(s) 168, 179
ApeKI GCWGC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 254
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 185, 318
BclI TGATCA 1 cut(s) 316
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 3 cut(s) 128, 182, 299
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 3 cut(s) 51, 121, 129
BseNI ACTGG 3 cut(s) 128, 182, 299
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 170, 181
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 177
BsnI GGCC 2 cut(s) 170, 181
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 3 cut(s) 119, 163, 316
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 170, 181
BspCNI CTCAG 3 cut(s) 50, 120, 130
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 171
BsrI ACTGG 3 cut(s) 128, 182, 299
BssMI GATC 3 cut(s) 119, 163, 316
BstC8I GCNNGC 2 cut(s) 103, 268
BstDEI CTNAG 4 cut(s) 37, 107, 138, 274
BstEII GGTNACC 1 cut(s) 305
BstKTI GATC 3 cut(s) 122, 166, 319
BstMBI GATC 3 cut(s) 119, 163, 316
BstNSI RCATGY 2 cut(s) 71, 105
BstPI GGTNACC 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuRI GGCC 2 cut(s) 170, 181
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 103, 268
CciI TCATGA 1 cut(s) 313
Csp6I GTAC 1 cut(s) 131
CviAII CATG 4 cut(s) 68, 102, 154, 314
CviJI RGCY 8 cut(s) 137, 170, 181, 215, 233, 273, 294, 343
CviKI_1 RGCY 8 cut(s) 137, 170, 181, 215, 233, 273, 294, 343
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 4 cut(s) 37, 107, 138, 274
DpnI GATC 3 cut(s) 121, 165, 318
DpnII GATC 3 cut(s) 119, 163, 316
EaeI YGGCCR 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
FaeI CATG 4 cut(s) 71, 105, 157, 317
FaiI YATR 4 cut(s) 69, 103, 155, 315
FatI CATG 4 cut(s) 67, 101, 153, 313
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 170, 181
HapII CCGG 1 cut(s) 178
Hin1II CATG 4 cut(s) 71, 105, 157, 317
HinfI GANTC 3 cut(s) 29, 221, 257
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 73, 151
Hpy188I TCNGA 3 cut(s) 28, 40, 262
Hpy188III TCNNGA 2 cut(s) 117, 314
Hpy8I GTNNAC 2 cut(s) 73, 151
HpyF3I CTNAG 4 cut(s) 37, 107, 138, 274
Hsp92II CATG 4 cut(s) 71, 105, 157, 317
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 119, 163, 316
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 121, 165, 318
MboI GATC 3 cut(s) 119, 163, 316
MlyI GAGTC 3 cut(s) 38, 230, 266
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 3 cut(s) 10, 116, 219
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 178
NdeII GATC 3 cut(s) 119, 163, 316
NlaIII CATG 4 cut(s) 71, 105, 157, 317
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 2 cut(s) 71, 105
PaeI GCATGC 1 cut(s) 105
PagI TCATGA 1 cut(s) 313
PciI ACATGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 3 cut(s) 37, 229, 265
PpsI GAGTC 3 cut(s) 37, 229, 265
PscI ACATGT 1 cut(s) 67
PspEI GGTNACC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 3 cut(s) 119, 163, 316
SchI GAGTC 3 cut(s) 38, 230, 266
SetI ASST 3 cut(s) 139, 235, 275
SfcI CTRYAG 1 cut(s) 216
SphI GCATGC 1 cut(s) 105
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 117
TaqI TCGA 1 cut(s) 224
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 115
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 2 cut(s) 71, 105
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.