Rh2BG505900

Pleckstrin homology domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012240
Physical Location & Seq
Forward (+)
71124336 .. 71128755
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG505900.1

Sequence Viewer

Length: 1500 bp
ATGGCCTCCAATGGCGCTGCTCCGAGAGTTGCAGACCCAGAGAATAGCTTGGAGAAGATCAAGCGCCAGCTCGCTTCCGGTTCGGGTCGGAACTTGCTCCAGGGCCCACTTCTCAAGCGATCCGAGACTCTGCGAAAGTGGAACGAGCGGTGGATGATCTTAGACCCGACGACAGGGAGAATGGAATACAAGATTAGGAGAAATGAGCCGAGTGTGAAGGGAACCATTCTATTTGATGCGAATAGCACAATCGCCCTATCTCCAGTGAACTTTCATGGGTTGGCAAAGTATGATGGCTGCTGTTTCTATATTGGGACCCCGCAGAAAAAAGACTATTTCCTTTGTGCAGAAACTCCTGGTGCGGCCAGAGCTTGGGTATCAACGTTACAAGCAACACAGTTGGTCCTAAAGGCCCATAAAGAAGCTGTGAATTCCTTGAGCGGCAATGGTTCAGCAAAATTAGGAACTGTTGCTGCAGTAGTTGCTGCTGCAAATTCAACTGCTGCAGAGAGTTCTAAGGAAATTGAAGCAGCAATGCATATTTCTTTGAGAAATGCTTTGGGAATGATAACCCAGAAGCCAACTGATGGTCCCATGGATGATTTTGCAGTAATGAAGGAGACACTGAAGGTCAAAGATGAGGAACTACAAAATTTGGCTCGGGACTTACGAGCACGTGATTCAACAATTAAAGAACTTGCAGAAAAATTGACTGAGACTGCTGAATCTGCCGAGGCTGCAGCCTTAGCAGCTCATACAATTGATGAACAAAGGAGAATTGCTTGTGCAGAAATCGAGCGTTTAAGAAGAGATTCAGAGAAGCAGCGGGAATCTTCCAAGTTAAAGCTAAAAGATTCTGAAGTAAAGGTTATGGACTTAACCAAAGAAAGAGAGCAATTGATTAAGCAGAGAGACTCTGCTCTTCAGGAGGCTCATATGTGGCGTTCTGAACTTGCAAAAGCTAGAGAGCGTGTTGTGATATTAGAAGCAGCCGTTGTGAGAGCCGAAGAGAAGGTCAGGGTTGCAGATGCAGATGCCGAAGCTAGAATAAAGGAGGCTGTTCAGAAAGAATCAGCTGCGCTGAATGAGAAGCAGGAGCTCCATGTCTATGTAAATAAGTTACAAGCACAACTCCAAAGAGAGCACGTTGATATGAAGCAAGTGTTTGAGGAGAAGTCAGAGTCTTGCTCAGATATTGGCAATAGACCCCTGACAAAACATGTAGACTTATCTGAGGAAAATGTTGATAAAGCATGCCTCAGTGTTTCTAGATCGGTTCCAGTACCAGCTGAGAGTGTAGTTCACATGGCAGGGGATCAGGCCAACTTCCGGCCAGTTGGAGATGGTGAGTGGAGTGATATTCAGGCTACAGAGTCGAGGATAGCTGATGTAAGAGAAATCGCCCCCGAGTCAGAAGCAAGCAGCTTAGATATTCCTGTTGTTAGCCAACCAGTTGGTAACCATCATGATCAAGGGGGAAACTCTTTTCAACAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

499

Amino Acids

55.07

Weight (kDa)

5.9

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 33 - 131 7.8e-06 PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 372, 587
AccBSI CCGCTC 2 cut(s) 148, 441
AccI GTMKAC 1 cut(s) 1224
AciI CCGC 5 cut(s) 148, 320, 362, 441, 826
AclI AACGTT 1 cut(s) 383
AclWI GGATC 2 cut(s) 114, 1323
AcoI YGGCCR 2 cut(s) 363, 1331
AcsI RAATTY 3 cut(s) 430, 493, 652
AcuI CTGAAG 3 cut(s) 647, 879, 908
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 1 cut(s) 1284
AfiI CCNNNNNNNGG 4 cut(s) 173, 372, 587, 1329
AflIII ACRYGT 1 cut(s) 1219
AgsI TTSAA 4 cut(s) 498, 527, 684, 1490
AjnI CCWGG 2 cut(s) 99, 355
Alw21I GWGCWC 3 cut(s) 676, 1101, 1146
Alw26I GTCTC 4 cut(s) 119, 614, 710, 906
AlwI GGATC 2 cut(s) 114, 1323
Ama87I CYCGRG 2 cut(s) 660, 1406
AoxI GGCC 6 cut(s) 3, 103, 363, 411, 1320, 1331
ApaI GGGCCC 1 cut(s) 107
ApoI RAATTY 3 cut(s) 430, 493, 652
ArsI GACNNNNNNTTYG 2 cut(s) 999, 1031
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 3 cut(s) 17, 66, 1081
AspS9I GGNCC 6 cut(s) 103, 104, 315, 403, 412, 590
AsuHPI GGTGA 1 cut(s) 1358
AvaI CYCGRG 2 cut(s) 660, 1406
AvaII GGWCC 3 cut(s) 315, 403, 590
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 107, 1101
BbrPI CACGTG 1 cut(s) 677
Bbv12I GWGCWC 3 cut(s) 676, 1101, 1146
BccI CCATC 4 cut(s) 287, 581, 1337, 1470
BceAI ACGGC 1 cut(s) 977
BciT130I CCWGG 2 cut(s) 101, 357
BclI TGATCA 1 cut(s) 1468
BcoDI GTCTC 4 cut(s) 119, 614, 710, 906
BfaI CTAG 3 cut(s) 963, 1044, 1269
BfmI CTRYAG 4 cut(s) 474, 504, 738, 1368
BfoI RGCGCY 2 cut(s) 18, 67
Bme1390I CCNGG 2 cut(s) 101, 357
Bme18I GGWCC 3 cut(s) 315, 403, 590
BmeT110I CYCGRG 2 cut(s) 660, 1406
BmgT120I GGNCC 6 cut(s) 103, 104, 315, 403, 412, 590
BmiI GGNNCC 6 cut(s) 105, 223, 316, 317, 592, 1278
BmrFI CCNGG 2 cut(s) 101, 357
BmsI GCATC 3 cut(s) 226, 1018, 1024
BplI GAGNNNNNCTC 2 cut(s) 1172, 1204
BpmI CTGGAG 2 cut(s) 83, 246
Bpu10I CCTNAGC 1 cut(s) 745
BpuEI CTTGAG 2 cut(s) 98, 457
BsaAI YACGTR 1 cut(s) 677
BsaJI CCNNGG 3 cut(s) 100, 594, 732
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 372, 587, 1329
Bse1I ACTGG 4 cut(s) 263, 1280, 1334, 1451
Bse3DI GCAATG 2 cut(s) 451, 540
BseBI CCWGG 2 cut(s) 101, 357
BseDI CCNNGG 3 cut(s) 100, 594, 732
BseGI GGATG 2 cut(s) 159, 604
BseLI CCNNNNNNNGG 4 cut(s) 173, 372, 587, 1329
BseMI GCAATG 2 cut(s) 451, 540
BseMII CTCAG 5 cut(s) 705, 1203, 1224, 1273, 1281
BseNI ACTGG 4 cut(s) 263, 1280, 1334, 1451
BseRI GAGGAG 1 cut(s) 1184
BseSI GKGCMC 1 cut(s) 107
BsgI GTGCAG 2 cut(s) 366, 807
BshFI GGCC 6 cut(s) 5, 105, 365, 413, 1322, 1333
BsiHKAI GWGCWC 3 cut(s) 676, 1101, 1146
BsiHKCI CYCGRG 2 cut(s) 660, 1406
BsiSI CCGG 2 cut(s) 78, 1330
BslFI GGGAC 3 cut(s) 328, 576, 677
BslI CCNNNNNNNGG 4 cut(s) 173, 372, 587, 1329
BsmAI GTCTC 4 cut(s) 119, 614, 710, 906
BsmFI GGGAC 3 cut(s) 328, 576, 677
BsnI GGCC 6 cut(s) 5, 105, 365, 413, 1322, 1333
BsoBI CYCGRG 2 cut(s) 660, 1406
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 4 cut(s) 107, 676, 1101, 1146
Bsp143I GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 5 cut(s) 148, 320, 362, 441, 826
BspANI GGCC 6 cut(s) 5, 105, 365, 413, 1322, 1333
BspCNI CTCAG 5 cut(s) 706, 1202, 1225, 1272, 1282
BspHI TCATGA 1 cut(s) 1465
BspLI GGNNCC 6 cut(s) 105, 223, 316, 317, 592, 1278
BspMAI CTGCAG 3 cut(s) 478, 508, 742
BspPI GGATC 2 cut(s) 114, 1323
BspQI GCTCTTC 1 cut(s) 927
BsrBI CCGCTC 2 cut(s) 148, 441
BsrDI GCAATG 2 cut(s) 451, 540
BsrI ACTGG 4 cut(s) 263, 1280, 1334, 1451
BssECI CCNNGG 3 cut(s) 100, 594, 732
BssMI GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 101, 357
Bst4CI ACNGT 2 cut(s) 399, 469
Bst6I CTCTTC 3 cut(s) 802, 927, 1002
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBAI YACGTR 1 cut(s) 677
BstC8I GCNNGC 4 cut(s) 68, 72, 1255, 1420
BstDEI CTNAG 9 cut(s) 160, 516, 714, 745, 1189, 1233, 1259, 1290, 1426
BstDSI CCRYGG 1 cut(s) 594
BstEII GGTNACC 1 cut(s) 1457
BstF5I GGATG 2 cut(s) 159, 604
BstH2I RGCGCY 2 cut(s) 18, 67
BstHHI GCGC 3 cut(s) 17, 66, 1081
BstKTI GATC 6 cut(s) 60, 122, 159, 1274, 1318, 1471
BstMAI GTCTC 4 cut(s) 119, 614, 710, 906
BstMBI GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
BstMWI GCNNNNNNNGC 6 cut(s) 368, 482, 728, 737, 746, 749
BstNI CCWGG 2 cut(s) 101, 357
BstNSI RCATGY 2 cut(s) 1223, 1257
BstPI GGTNACC 1 cut(s) 1457
BstSCI CCNGG 2 cut(s) 99, 355
BstSFI CTRYAG 4 cut(s) 474, 504, 738, 1368
BstSLI GKGCMC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 1454
BsuRI GGCC 6 cut(s) 5, 105, 365, 413, 1322, 1333
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 159, 604
BtsIMutI CAGTG 3 cut(s) 270, 623, 1267
Cac8I GCNNGC 4 cut(s) 68, 72, 1255, 1420
CciI TCATGA 1 cut(s) 1465
CfoI GCGC 3 cut(s) 17, 66, 1081
Cfr13I GGNCC 6 cut(s) 103, 104, 315, 403, 412, 590
Csp6I GTAC 1 cut(s) 1283
CviAII CATG 7 cut(s) 275, 595, 1103, 1220, 1254, 1306, 1466
CviQI GTAC 1 cut(s) 1283
DdeI CTNAG 9 cut(s) 160, 516, 714, 745, 1189, 1233, 1259, 1290, 1426
DpnI GATC 6 cut(s) 59, 121, 158, 1273, 1317, 1470
DpnII GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
EaeI YGGCCR 2 cut(s) 363, 1331
Eam1104I CTCTTC 3 cut(s) 802, 927, 1002
EarI CTCTTC 3 cut(s) 802, 927, 1002
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 2 cut(s) 107, 1101
Eco47I GGWCC 3 cut(s) 315, 403, 590
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 3 cut(s) 647, 879, 908
Eco72I CACGTG 1 cut(s) 677
Eco88I CYCGRG 2 cut(s) 660, 1406
Eco91I GGTNACC 1 cut(s) 1457
EcoICRI GAGCTC 1 cut(s) 1099
EcoO109I RGGNCCY 2 cut(s) 103, 315
EcoO65I GGTNACC 1 cut(s) 1457
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 99, 355
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 540
EcoT38I GRGCYC 2 cut(s) 107, 1101
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 7 cut(s) 278, 598, 1106, 1223, 1257, 1309, 1469
FaqI GGGAC 3 cut(s) 328, 576, 677
FatI CATG 7 cut(s) 274, 594, 1102, 1219, 1253, 1305, 1465
FauI CCCGC 2 cut(s) 327, 819
FauNDI CATATG 1 cut(s) 936
FbaI TGATCA 1 cut(s) 1468
FblI GTMKAC 1 cut(s) 1224
FokI GGATG 2 cut(s) 166, 611
FriOI GRGCYC 2 cut(s) 107, 1101
FspBI CTAG 3 cut(s) 963, 1044, 1269
GlaI GCGC 3 cut(s) 16, 65, 1080
GsuI CTGGAG 2 cut(s) 83, 246
HaeII RGCGCY 2 cut(s) 18, 67
HaeIII GGCC 6 cut(s) 5, 105, 365, 413, 1322, 1333
HapII CCGG 2 cut(s) 78, 1330
HhaI GCGC 3 cut(s) 17, 66, 1081
Hin1II CATG 7 cut(s) 278, 598, 1106, 1223, 1257, 1309, 1469
Hin6I GCGC 3 cut(s) 15, 64, 1079
HinP1I GCGC 3 cut(s) 15, 64, 1079
HpaII CCGG 2 cut(s) 78, 1330
HphI GGTGA 1 cut(s) 1358
Hpy166II GTNNAC 3 cut(s) 268, 1225, 1303
Hpy188III TCNNGA 4 cut(s) 662, 926, 1269, 1466
Hpy8I GTNNAC 3 cut(s) 268, 1225, 1303
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 211, 610, 622, 1006
HpyCH4III ACNGT 2 cut(s) 399, 469
HpyCH4IV ACGT 3 cut(s) 383, 676, 1146
HpyF10VI GCNNNNNNNGC 6 cut(s) 368, 482, 728, 737, 746, 749
HpyF3I CTNAG 9 cut(s) 160, 516, 714, 745, 1189, 1233, 1259, 1290, 1426
HpySE526I ACGT 3 cut(s) 383, 676, 1146
Hsp92II CATG 7 cut(s) 278, 598, 1106, 1223, 1257, 1309, 1469
HspAI GCGC 3 cut(s) 15, 64, 1079
KflI GGGWCCC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 1468
Kzo9I GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 4 cut(s) 25, 102, 1096, 1104
LweI GCATC 3 cut(s) 226, 1018, 1024
MaeI CTAG 3 cut(s) 963, 1044, 1269
MaeII ACGT 3 cut(s) 383, 676, 1146
MaeIII GTNAC 3 cut(s) 384, 1119, 1457
MalI GATC 6 cut(s) 59, 121, 158, 1273, 1317, 1470
MbiI CCGCTC 2 cut(s) 148, 441
MboI GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
MboII GAAGA 5 cut(s) 67, 819, 825, 914, 1019
MfeI CAATTG 2 cut(s) 759, 896
MhlI GDGCHC 4 cut(s) 107, 676, 1101, 1146
MlyI GAGTC 5 cut(s) 121, 908, 1190, 1382, 1418
MmeI TCCRAC 2 cut(s) 68, 1318
MnlI CCTC 9 cut(s) 16, 634, 727, 922, 1048, 1162, 1228, 1268, 1371
Mph1103I ATGCAT 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 5 cut(s) 690, 803, 842, 878, 903
MslI CAYNNNNRTG 1 cut(s) 1107
MspA1I CMGCKG 3 cut(s) 826, 1076, 1289
MspI CCGG 2 cut(s) 78, 1330
MspR9I CCNGG 2 cut(s) 101, 357
MunI CAATTG 2 cut(s) 759, 896
MvaI CCWGG 2 cut(s) 101, 357
MwoI GCNNNNNNNGC 6 cut(s) 368, 482, 728, 737, 746, 749
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 936
NdeII GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
NlaIII CATG 7 cut(s) 278, 598, 1106, 1223, 1257, 1309, 1469
NlaIV GGNNCC 6 cut(s) 105, 223, 316, 317, 592, 1278
NmeAIII GCCGAG 2 cut(s) 234, 757
NsiI ATGCAT 1 cut(s) 540
NspI RCATGY 2 cut(s) 1223, 1257
PaeI GCATGC 1 cut(s) 1257
PagI TCATGA 1 cut(s) 1465
PciI ACATGT 1 cut(s) 1219
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 6 cut(s) 680, 725, 812, 830, 854, 1070
PflMI CCANNNNNTGG 2 cut(s) 372, 587
PleI GAGTC 5 cut(s) 121, 908, 1189, 1381, 1417
PmaCI CACGTG 1 cut(s) 677
PmlI CACGTG 1 cut(s) 677
PpsI GAGTC 5 cut(s) 121, 908, 1189, 1381, 1417
Ppu21I YACGTR 1 cut(s) 677
PpuMI RGGWCCY 1 cut(s) 315
PscI ACATGT 1 cut(s) 1219
Psp124BI GAGCTC 1 cut(s) 1101
Psp1406I AACGTT 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 99, 355
PspCI CACGTG 1 cut(s) 677
PspEI GGTNACC 1 cut(s) 1457
PspGI CCWGG 2 cut(s) 99, 355
PspN4I GGNNCC 6 cut(s) 105, 223, 316, 317, 592, 1278
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 6 cut(s) 103, 104, 315, 403, 412, 590
PspPPI RGGWCCY 1 cut(s) 315
PstI CTGCAG 3 cut(s) 478, 508, 742
PvuII CAGCTG 2 cut(s) 1076, 1289
RsaI GTAC 1 cut(s) 1284
RsaNI GTAC 1 cut(s) 1283
RseI CAYNNNNRTG 1 cut(s) 1107
SacI GAGCTC 1 cut(s) 1101
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 690, 803, 842, 878, 903
Sau3AI GATC 6 cut(s) 57, 119, 156, 1271, 1315, 1468
Sau96I GGNCC 6 cut(s) 103, 104, 315, 403, 412, 590
SchI GAGTC 5 cut(s) 121, 908, 1190, 1382, 1418
ScrFI CCNGG 2 cut(s) 101, 357
SduI GDGCHC 4 cut(s) 107, 676, 1101, 1146
SfaNI GCATC 3 cut(s) 226, 1018, 1024
SfcI CTRYAG 4 cut(s) 474, 504, 738, 1368
SinI GGWCC 3 cut(s) 315, 403, 590
SmiMI CAYNNNNRTG 1 cut(s) 1107
SmlI CTYRAG 2 cut(s) 113, 436
SmoI CTYRAG 2 cut(s) 113, 436
SphI GCATGC 1 cut(s) 1257
SsiI CCGC 5 cut(s) 148, 320, 362, 441, 826
SspMI CTAG 3 cut(s) 963, 1044, 1269
SstI GAGCTC 1 cut(s) 1101
StyD4I CCNGG 2 cut(s) 99, 355
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 399, 469
TaiI ACGT 3 cut(s) 386, 679, 1149
TaqI TCGA 2 cut(s) 795, 1376
TauI GCSGC 2 cut(s) 365, 444
TfiI GAWTC 6 cut(s) 680, 725, 812, 830, 854, 1070
Tru1I TTAA 5 cut(s) 690, 803, 842, 878, 903
Tru9I TTAA 5 cut(s) 690, 803, 842, 878, 903
TscAI CASTG 3 cut(s) 270, 630, 1267
TspDTI ATGAA 4 cut(s) 263, 629, 780, 1169
TspRI CASTG 3 cut(s) 270, 630, 1267
Van91I CCANNNNNTGG 2 cut(s) 372, 587
VpaK11BI GGWCC 3 cut(s) 315, 403, 590
XapI RAATTY 3 cut(s) 430, 493, 652
XbaI TCTAGA 1 cut(s) 1268
XceI RCATGY 2 cut(s) 1223, 1257
XmiI GTMKAC 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 3 cut(s) 963, 1044, 1269
Zsp2I ATGCAT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.