AT2G31425

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015949
Physical Location & Seq
Forward (+)
13394715 .. 13395767
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31425.1

Sequence Viewer

Length: 558 bp
ATGGCCAAAATGACAATAACACACATGAAGTTTCTTCAACTGTTGTTATCTTTAGTGCTCTTTGTATTCTCAATGTCAAATGCAATGCCAATCTCAGACGTACATAATTTTTGCAAGGAAACGTTTGAAGTAGAATTCTGCATGAAATACATTGGGTCGGACCAACGTCTCGTAGCCGCACGCGACTTCAGTGACATGCTTTTAATTCCGATATCTGAGACTCAAATTCAAGTGACCAATGCAATCACACAAATCAACAATATCCGCCAAAGGTTTAATGACACGCTTGGAAAGAATCGGATCGCTCTATGCGAGGAAAAATACGAGAGCGCGGGCACTAGTTTTCACAAGGCTTGGGAAGTCGGACAGAAAAAGTCAAATTCATCGACGGACCATATGGAAATAACCCGAAACACGCAAGCTGGCTTTGATGCTGTGTGCGAGTGCGAAGACGAATGGGCAAAGCATGGTCCGAAACAAGAGTCTCCTCTCACTTTCTATTACCATAACGTTCTGAAACTATGCCAAATTACTCGTCTTATTATCAGCAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

6.59

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 33 - 177 2.4e-11 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31425 AT2G31430 AT2G31432 AT2G31432 AT3G55680
rosa_chinensis RchiOBHm_Chr3g0486661
rosa_laevigata RLG00000023068
rosa_multiflora Rmu_sc0000261.1_g000009
rosa_roxburghii Rroxscaffold_6G00395680
rosa_rugosa Rorug03G0226400
rosa_samantha Rh3AG275900 Rh3BG311100 Rh3CG310500 Rh3DG306900
rosa_wichuraiana Rw3G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 183, 332
AciI CCGC 3 cut(s) 177, 265, 332
AclI AACGTT 2 cut(s) 122, 510
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 134, 225, 379
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 3 cut(s) 38, 128, 230
AhlI ACTAGT 1 cut(s) 338
AluBI AGCT 2 cut(s) 422, 553
AluI AGCT 2 cut(s) 422, 553
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 173, 212, 489
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 134, 225, 379
ArsI GACNNNNNNTTYG 4 cut(s) 467, 499, 520, 552
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 3 cut(s) 160, 391, 470
AvaII GGWCC 3 cut(s) 160, 391, 470
BaeGI GKGCMC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 60
BcoDI GTCTC 3 cut(s) 173, 212, 489
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 3 cut(s) 160, 391, 470
BmgT120I GGNCC 3 cut(s) 160, 391, 470
BmsI GCATC 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 108, 207
BseRI GAGGAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 338
Bsh1236I CGCG 2 cut(s) 183, 332
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 60
BsmAI GTCTC 3 cut(s) 173, 212, 489
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 60, 338
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 3 cut(s) 177, 265, 332
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 107, 208
BspFNI CGCG 2 cut(s) 183, 332
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 90
BssMI GATC 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 42
BstC8I GCNNGC 5 cut(s) 181, 334, 420, 424, 551
BstDEI CTNAG 2 cut(s) 94, 216
BstFNI CGCG 2 cut(s) 183, 332
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 3 cut(s) 173, 212, 489
BstMBI GATC 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 2 cut(s) 183, 332
BstV2I GAAGAC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 5 cut(s) 181, 334, 420, 424, 551
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 3 cut(s) 160, 391, 470
Csp6I GTAC 1 cut(s) 101
CviAII CATG 4 cut(s) 25, 142, 196, 467
CviJI RGCY 6 cut(s) 5, 176, 353, 422, 426, 553
CviKI_1 RGCY 6 cut(s) 5, 176, 353, 422, 426, 553
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 94, 216
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 254
Eco32I GATATC 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 160, 391, 470
Eco57I CTGAAG 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 134
EcoRV GATATC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 28, 145, 199, 470
FatI CATG 4 cut(s) 24, 141, 195, 466
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 339
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 332
Hin1II CATG 4 cut(s) 28, 145, 199, 470
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 220, 295, 482
Hpy188I TCNGA 8 cut(s) 97, 160, 210, 217, 300, 365, 474, 516
Hpy99I CGWCG 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 4 cut(s) 99, 122, 166, 510
HpyCH4V TGCA 4 cut(s) 83, 114, 141, 242
HpyF3I CTNAG 2 cut(s) 94, 216
HpySE526I ACGT 4 cut(s) 99, 122, 166, 510
Hsp92II CATG 4 cut(s) 28, 145, 199, 470
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 1 cut(s) 408
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 339
MaeII ACGT 4 cut(s) 99, 122, 166, 510
MaeIII GTNAC 2 cut(s) 191, 232
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 26, 461
MhlI GDGCHC 2 cut(s) 60, 338
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 106, 134, 204, 225, 379, 528
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 214, 491
MmeI TCCRAC 2 cut(s) 138, 343
MnlI CCTC 2 cut(s) 307, 498
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 203, 276
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 2 cut(s) 183, 332
NdeI CATATG 1 cut(s) 396
NdeII GATC 1 cut(s) 300
NlaIII CATG 4 cut(s) 28, 145, 199, 470
NmuCI GTSAC 2 cut(s) 191, 232
NspI RCATGY 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 2 cut(s) 214, 490
PpsI GAGTC 2 cut(s) 214, 490
PshAI GACNNNNGTC 1 cut(s) 165
Psp1406I AACGTT 2 cut(s) 122, 510
PspPI GGNCC 3 cut(s) 160, 391, 470
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 203, 276
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 3 cut(s) 160, 391, 470
SchI GAGTC 2 cut(s) 214, 491
SduI GDGCHC 2 cut(s) 60, 338
SetI ASST 7 cut(s) 102, 125, 169, 275, 424, 513, 555
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 3 cut(s) 160, 391, 470
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 6 cut(s) 106, 134, 204, 225, 379, 528
SsiI CCGC 3 cut(s) 177, 265, 332
SspMI CTAG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 4 cut(s) 102, 125, 169, 513
TaqI TCGA 1 cut(s) 386
TasI AATT 6 cut(s) 106, 134, 204, 225, 379, 528
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 203, 276
Tru9I TTAA 2 cut(s) 203, 276
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 191, 232
Tsp45I GTSAC 2 cut(s) 191, 232
TspDTI ATGAA 3 cut(s) 41, 158, 372
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 3 cut(s) 160, 391, 470
XapI RAATTY 3 cut(s) 134, 225, 379
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.