Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000261.1

Orthogroup ID

OG0015949

Physical Location & Seq

Genomic Coordinates Forward (+)

48852 .. 49391

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000261.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcttctgacaaccgtagctggtggatagtactgtttcttgctctccttttgtactatcactcaatcgtcgtcactgcagctgatcaagccttgcttgacaaaatctgcaagctggctcagagttacgatttttgcctctcaacactgcgcaacgacccacgtactggtcaagctgaccttcgtggcctttccctaatctccattgcaataaccattgatgaagtacgagatgtttccgatcgactgcctaacattccagtacctaatcatcccgtcgatcagcaacggaaaaaggcttgtcagactgattatagtgacgcattagccagtttccagaaggcttaccagacctcagctaaaggggattactggggtgtgatcgacttggtgagggttggagcaaacaaagctatagattgcgaagacatatacaagagagatccgttaagcgtgtcaccagtctctacagataaccacaaagtgattcagcttgcagagatcactttaattgttattgattttcaaaccagacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0010029 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0048580 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

5.74

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31425 AT2G31430 AT2G31432 AT2G31432 AT3G55680
rosa_chinensis	RchiOBHm_Chr3g0486661
rosa_laevigata	RLG00000023068
rosa_multiflora	Rmu_sc0000261.1_g000009
rosa_roxburghii	Rroxscaffold_6G00395680
rosa_rugosa	Rorug03G0226400
rosa_samantha	Rh3AG275900 Rh3BG311100 Rh3CG310500 Rh3DG306900
rosa_wichuraiana	Rw3G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	5 cut(s)	33, 56, 166, 228, 264
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	527
AluBI	AGCT	7 cut(s)	21, 83, 115, 176, 359, 413, 493
AluI	AGCT	7 cut(s)	21, 83, 115, 176, 359, 413, 493
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	403, 450
BbsI	GAAGAC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	3 cut(s)	78, 414, 468
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	5 cut(s)	172, 260, 330, 377, 461
Bse3DI	GCAATG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	134, 369
BseNI	ACTGG	5 cut(s)	172, 260, 330, 377, 461
BseXI	GCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	133, 368
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	5 cut(s)	172, 260, 330, 377, 461
BssMI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
Bst4CI	ACNGT	2 cut(s)	17, 36
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	113, 117, 495
BstDEI	CTNAG	2 cut(s)	120, 355
BstF5I	GGATG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	6 cut(s)	88, 244, 283, 384, 445, 504
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 410
BstSFI	CTRYAG	3 cut(s)	78, 414, 468
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	75, 146
BtsIMutI	CAGTG	2 cut(s)	75, 146
Cac8I	GCNNGC	3 cut(s)	113, 117, 495
CfoI	GCGC	1 cut(s)	153
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	5 cut(s)	32, 55, 165, 227, 263
CviQI	GTAC	5 cut(s)	32, 55, 165, 227, 263
DdeI	CTNAG	2 cut(s)	120, 355
DpnI	GATC	6 cut(s)	87, 243, 282, 383, 444, 503
DpnII	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
DraIII	CACNNNGTG	1 cut(s)	484
FaiI	YATR	4 cut(s)	315, 416, 431, 433
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 165, 197
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	487
HphI	GGTGA	2 cut(s)	403, 450
Hpy188I	TCNGA	4 cut(s)	10, 123, 241, 306
Hpy188III	TCNNGA	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	74, 281
HpyAV	CCTTC	2 cut(s)	191, 334
HpyCH4III	ACNGT	2 cut(s)	17, 36
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	80, 111, 209, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 410
HpyF3I	CTNAG	2 cut(s)	120, 355
HpySE526I	ACGT	1 cut(s)	163
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	9 cut(s)	7, 101, 153, 273, 343, 350, 358, 362, 474
Lsp1109I	GCAGC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	4 cut(s)	73, 125, 317, 456
MalI	GATC	6 cut(s)	87, 243, 282, 383, 444, 503
MboI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	149, 364, 387
MseI	TTAA	3 cut(s)	449, 509, 538
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	89, 410
NdeII	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
NmuCI	GTSAC	3 cut(s)	73, 317, 456
NsbI	TGCGCA	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	487
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	5 cut(s)	33, 56, 166, 228, 264
RsaNI	GTAC	5 cut(s)	32, 55, 165, 227, 263
SaqAI	TTAA	3 cut(s)	449, 509, 538
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
ScaI	AGTACT	1 cut(s)	33
SfcI	CTRYAG	3 cut(s)	78, 414, 468
Sse9I	AATT	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	17, 36
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	244, 279, 384
TasI	AATT	1 cut(s)	510
TatI	WGTACW	2 cut(s)	31, 54
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	449, 509, 538
Tru9I	TTAA	3 cut(s)	449, 509, 538
TscAI	CASTG	2 cut(s)	82, 153
TseFI	GTSAC	3 cut(s)	73, 317, 456
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	3 cut(s)	73, 317, 456
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	304, 435
TspRI	CASTG	2 cut(s)	82, 153
Van91I	CCANNNNNTGG	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.