Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0015949

Physical Location & Seq

Genomic Coordinates Reverse (-)

20780709 .. 20781473

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0226400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTGGGTTCAAAAGCCAAAGGTGGTCTCTTAAGGGTATGACTGCACTAGTCACCGGTGGAACTAGAGGCATTGGGTATGCCATTATAGAAGAACTAGCAGGACTTGGGGCAACAGTGCATACCAGTGCTCGTAACAAGGCAATTATCGATGAGAGGGTTCGAGAGTGGAAGATTAAGGGATTTACAGTGAGTGGTTCAGTTTGTGACCTCACATCTATATCTCAAAGGGAGGAGCTCATAAAGACTGTCTCATCTGTATCTGTTTTTGATGGCAAGCTTAGCATCCATGTAGGTAAACGTACAAGAGGAACTACAGATTATAGTTTAGAAGATTTCTCCAGTATGATGAGCAGCAATGTTGAATCTCCCTACCATCTTTGTCAACTAGCACATCCTCTTCTTAAGGCATTAGGAAATGGAAGCTTTATATTTTTCTCCTCTATTGCTGGTGTAATAGCTCTGCCTAAACATATATATAGGAGACTAGGAGACAGAATGAGAGTTTCAGAAGGAGCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0010029 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0048580 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

174

Amino Acids

18.93

Weight (kDa)

9.65

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 156	2.6e-18	short chain dehydrogenase
KR	PF08659	15 - 156	5.9e-09	KR domain
adh_short_C2	PF13561	23 - 157	3.7e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31425 AT2G31430 AT2G31432 AT2G31432 AT3G55680
rosa_chinensis	RchiOBHm_Chr3g0486661
rosa_laevigata	RLG00000023068
rosa_multiflora	Rmu_sc0000261.1_g000009
rosa_roxburghii	Rroxscaffold_6G00395680
rosa_rugosa	Rorug03G0226400
rosa_samantha	Rh3AG275900 Rh3BG311100 Rh3CG310500 Rh3DG306900
rosa_wichuraiana	Rw3G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	304
AflII	CTTAAG	2 cut(s)	32, 404
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	13, 365
AhlI	ACTAGT	1 cut(s)	49
AluBI	AGCT	4 cut(s)	238, 280, 426, 461
AluI	AGCT	4 cut(s)	238, 280, 426, 461
Alw21I	GWGCWC	2 cut(s)	133, 240
Alw26I	GTCTC	4 cut(s)	33, 256, 478, 486
ApeKI	GCWGC	1 cut(s)	354
AsiGI	ACCGGT	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	133, 240
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	266, 384
BcoDI	GTCTC	4 cut(s)	33, 256, 478, 486
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	5 cut(s)	50, 66, 98, 389, 488
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	2 cut(s)	32, 404
BisI	GCNGC	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	126, 342
Bse3DI	GCAATG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	2 cut(s)	285, 394
BseMI	GCAATG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	126, 342
BseRI	GAGGAG	2 cut(s)	248, 430
BseXI	GCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	30
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	133, 240
BsiSI	CCGG	1 cut(s)	57
BsmAI	GTCTC	4 cut(s)	33, 256, 478, 486
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	133, 240
Bsp1720I	GCTNAGC	1 cut(s)	281
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	517
BspTI	CTTAAG	2 cut(s)	32, 404
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	126, 342
BssAI	RCCGGY	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	118, 190, 250
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	2 cut(s)	32, 404
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	285, 394
BstMAI	GTCTC	4 cut(s)	33, 256, 478, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	285, 394
BtsIMutI	CAGTG	3 cut(s)	123, 133, 195
Cac8I	GCNNGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	303
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	6 cut(s)	18, 238, 280, 426, 461, 518
CviKI_1	RGCY	6 cut(s)	18, 238, 280, 426, 461, 518
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	1 cut(s)	293
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	2 cut(s)	272, 381
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	5 cut(s)	50, 66, 98, 389, 488
GluI	GCNGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	325
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HindIII	AAGCTT	2 cut(s)	278, 424
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	299, 386
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	299, 386
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	3 cut(s)	118, 190, 250
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	47, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	235, 515
LpnPI	CCDG	5 cut(s)	70, 87, 139, 355, 435
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	5 cut(s)	50, 66, 98, 389, 488
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	52, 134, 206
MboII	GAAGA	4 cut(s)	104, 184, 344, 392
MhlI	GDGCHC	2 cut(s)	133, 240
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	7 cut(s)	62, 150, 221, 226, 302, 408, 451
MseI	TTAA	3 cut(s)	33, 177, 405
MslI	CAYNNNNRTG	1 cut(s)	126
MspCI	CTTAAG	2 cut(s)	32, 404
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	52, 206
PfeI	GAWTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	517
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	33, 177, 405
SatI	GCNGC	1 cut(s)	355
SduI	GDGCHC	2 cut(s)	133, 240
SetI	ASST	8 cut(s)	26, 213, 240, 282, 298, 304, 428, 463
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	315
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	32, 404
SmoI	CTYRAG	2 cut(s)	32, 404
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	1 cut(s)	144
SspMI	CTAG	5 cut(s)	50, 66, 98, 389, 488
SstI	GAGCTC	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	118, 190, 250
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	150, 163
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	33, 177, 405
Tru9I	TTAA	3 cut(s)	33, 177, 405
TscAI	CASTG	3 cut(s)	123, 133, 195
TseFI	GTSAC	2 cut(s)	52, 206
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	2 cut(s)	52, 206
TspRI	CASTG	3 cut(s)	123, 133, 195
Vha464I	CTTAAG	2 cut(s)	32, 404
XspI	CTAG	5 cut(s)	50, 66, 98, 389, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.