AT3G55680

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015949
Physical Location & Seq
Reverse (-)
20665685 .. 20666315
631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55680.1

Sequence Viewer

Length: 552 bp
ATGGCCTCAATGCTCATCAAACACTTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTTCTTTGCGTTTACAGTCGCAGATGCGATGTCTATCAAGGACATGTACGCATTTTGCAAGGATACAGATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCACGCGACCTCCATGATGTGCTTGTTATTGCAATTTCTCAATGCCAAATCCAATTGACCAAGGCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTCGACGACTCTATTTTTGCGGAAAGCACTACTGTTTAGCGTCTGCTTTCTTCCAAAAGGCTTATGAAGAAGCACAAGAAGAAGGGCTCGAGTCCATAGCTCAGCTTTCTGCAGTGGATGGCTCACACTATATGTTCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTCACTTTCTATTATACAAATGTTGTCGAATTGTTATCAATCATTCAGGTTATTATCGAAAAGATGTATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

183

Amino Acids

20.86

Weight (kDa)

6.88

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 35 - 173 2.6e-08 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31425 AT2G31430 AT2G31432 AT2G31432 AT3G55680
rosa_chinensis RchiOBHm_Chr3g0486661
rosa_laevigata RLG00000023068
rosa_multiflora Rmu_sc0000261.1_g000009
rosa_roxburghii Rroxscaffold_6G00395680
rosa_rugosa Rorug03G0226400
rosa_samantha Rh3AG275900 Rh3BG311100 Rh3CG310500 Rh3DG306900
rosa_wichuraiana Rw3G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 177, 312
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 145, 430
AluBI AGCT 2 cut(s) 392, 397
AluI AGCT 2 cut(s) 392, 397
Alw26I GTCTC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspS9I GGNCC 2 cut(s) 281, 458
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 281, 458
BaeI ACNNNNGTAYC 4 cut(s) 151, 184, 455, 488
BanII GRGCYC 1 cut(s) 381
BccI CCATC 1 cut(s) 404
BciVI GTATCC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 1 cut(s) 550
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 2 cut(s) 281, 458
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 281, 458
BmsI GCATC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse8I GATNNNNATC 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 1 cut(s) 89
BseMII CTCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 2 cut(s) 177, 312
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 183
BspMAI CTGCAG 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 73, 326
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 172, 393
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 167
BstUI CGCG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 281, 458
CseI GACGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 100, 191
CviJI RGCY 8 cut(s) 5, 176, 353, 379, 392, 397, 414, 549
CviKI_1 RGCY 8 cut(s) 5, 176, 353, 379, 392, 397, 414, 549
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 172, 393
Eco105I TACGTA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 281, 458
Eco88I CYCGRG 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 103, 194
FaiI YATR 9 cut(s) 101, 164, 192, 357, 389, 423, 425, 492, 546
FaqI GGGAC 1 cut(s) 304
FatI CATG 2 cut(s) 99, 190
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 550
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 103, 194
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 292, 300, 383
Hpy166II GTNNAC 2 cut(s) 69, 133
Hpy188I TCNGA 1 cut(s) 285
Hpy8I GTNNAC 2 cut(s) 69, 133
Hpy99I CGWCG 2 cut(s) 43, 300
HpyAV CCTTC 2 cut(s) 45, 368
HpyCH4III ACNGT 2 cut(s) 73, 326
HpyCH4IV ACGT 2 cut(s) 129, 166
HpyCH4V TGCA 3 cut(s) 114, 209, 404
HpyF3I CTNAG 2 cut(s) 172, 393
HpySE526I ACGT 2 cut(s) 129, 166
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 103, 194
LpnPI CCDG 1 cut(s) 509
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 550
MaeII ACGT 2 cut(s) 129, 166
MboII GAAGA 4 cut(s) 334, 371, 383, 449
MfeI CAATTG 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 210, 230, 506
MlyI GAGTC 3 cut(s) 286, 294, 392
MnlI CCTC 2 cut(s) 16, 197
MseI TTAA 1 cut(s) 26
MunI CAATTG 1 cut(s) 230
MvnI CGCG 1 cut(s) 183
NlaIII CATG 2 cut(s) 103, 194
NspI RCATGY 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 380
PciI ACATGT 1 cut(s) 99
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 3 cut(s) 286, 294, 391
PpsI GAGTC 3 cut(s) 286, 294, 391
Ppu21I YACGTR 1 cut(s) 167
PscI ACATGT 1 cut(s) 99
PspPI GGNCC 2 cut(s) 281, 458
PspXI VCTCGAGB 1 cut(s) 380
PstI CTGCAG 1 cut(s) 406
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 281, 458
SchI GAGTC 3 cut(s) 286, 294, 392
SduI GDGCHC 1 cut(s) 381
SetI ASST 6 cut(s) 132, 169, 189, 394, 399, 528
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 2 cut(s) 281, 458
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 3 cut(s) 210, 230, 506
SsiI CCGC 2 cut(s) 177, 312
SspMI CTAG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 73, 326
TaiI ACGT 2 cut(s) 132, 169
TaqI TCGA 4 cut(s) 295, 381, 504, 534
TaqII GACCGA 1 cut(s) 475
TasI AATT 3 cut(s) 210, 230, 506
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 372, 456
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 281, 458
XceI RCATGY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 1 cut(s) 550
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.