AT2G31870

poly(ADP-ribose) glycohydrolase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13549861 .. 13553844
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31870.1

Sequence Viewer

Length: 1647 bp
ATGGAGAATCGCGAAGATCTTAACTCAATTCTTCCGTACCTTCCACTTGTAATTCGTTCGTCGTCGCTGTATTGGCCGCCGCGTGTGGTGGAGGCGTTAAAGGCAATGTCTGAAGGACCATCTCACAGCCAAGTTGACTCAGGAGAGGTTCTACGGCAAGCTATTTTCGATATGAGACGATCCTTATCTTTCTCTACTCTCGAGCCATCTGCTTCTAATGGCTACGCATTTCTCTTTGACGAATTGATTGATGAGAAAGAATCAAAGAGATGGTTCGATGAGATTATCCCAGCATTGGCGAGCTTACTTCTACAGTTTCCATCTCTGTTAGAAGTGCATTTCCAAAATGCTGATAATATTGTTAGTGGAATCAAAACCGGTCTTCGTTTGTTAAATTCCCAACAAGCTGGCATTGTTTTCCTCAGCCAGGAGTTGATTGGAGCTCTTCTTGCATGCTCTTTCTTTTGTTTGTTTCCGGATGATAATAGAGGTGCAAAACACCTTCCAGTCATCAACTTTGATCATTTGTTTGCAAGCCTTTATATAAGTTATAGTCAAAGTCAAGAAAGCAAGATAAGATGTATTATGCATTACTTTGAAAGGTTTTGCTCCTGCGTGCCTATTGGTATTGTTTCATTTGAACGCAAGATTACCGCTGCTCCTGATGCTGATTTCTGGAGCAAGTCTGACGTTTCTCTTTGTGCATTTAAGGTTCACTCTTTTGGGTTAATTGAAGATCAACCTGACAATGCTCTCGAAGTGGACTTTGCAAACAAGTATCTCGGAGGTGGTTCCCTAAGTAGAGGGTGCGTGCAGGAAGAGATACGCTTCATGATTAACCCTGAATTAATCGCTGGCATGCTTTTCTTGCCTCGGATGGATGACAATGAAGCTATAGAAATAGTTGGTGCGGAAAGATTTTCATGTTACACAGGGTATGCATCTTCGTTTCGGTTTGCTGGTGAGTACATTGACAAAAAGGCAATGGATCCTTTCAAAAGGCGAAGAACCAGAATTGTTGCAATTGATGCATTATGTACACCGAAGATGAGACACTTTAAAGATATATGTCTTTTAAGGGAAATTAATAAGGCACTATGTGGCTTTTTAAATTGTAGCAAGGCTTGGGAGCACCAGAATATATTCATGGATGAAGGAGATAATGAAATTCAGCTTGTCCGAAACGGCAGAGATTCTGGTCTTCTGCGTACAGAAACTACTGCGTCACACCGAACTCCACTAAATGATGTTGAGATGAATAGAGAAAAGCCTGCTAACAATCTTATCAGAGATTTTTATGTGGAAGGAGTTGATAACGAGGATCATGAAGATGATGGTGTCGCGACAGGGAATTGGGGATGTGGTGTTTTTGGAGGAGACCCAGAGCTAAAGGCTACGATACAATGGCTTGCTGCTTCCCAGACTCGAAGACCATTTATATCATATTACACCTTTGGAGTAGAGGCACTCCGAAACCTAGATCAGGTGACGAAGTGGATTCTTTCCCATAAATGGACTGTTGGAGATCTGTGGAACATGATGTTAGAATATTCTGCTCAAAGGCTCTACAAGCAAACCAGTGTTGGCTTCTTTTCTTGGCTACTTCCATCTCTAGCTACCACCAACAAAGCTATCCAGCCGCCTTGA

Protein Analysis

548

Amino Acids

62.17

Weight (kDa)

5.33

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PARG_cat_N PF20811 84 - 215 2.6e-38 Poly (ADP-ribose) glycohydrolase (PARG), helical domain
PARG_cat_C PF05028 224 - 491 2.5e-81 Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 12, 82, 1343
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 5 cut(s) 77, 80, 654, 911, 1640
AclWI GGATC 4 cut(s) 174, 983, 996, 1329
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 2 cut(s) 394, 1167
AcuI CTGAAG 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 4 cut(s) 38, 968, 1039, 1210
AfiI CCNNNNNNNGG 4 cut(s) 295, 427, 1483, 1512
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 4 cut(s) 599, 641, 734, 997
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 9 cut(s) 161, 303, 407, 443, 893, 1174, 1387, 1616, 1631
AluI AGCT 9 cut(s) 161, 303, 407, 443, 893, 1174, 1387, 1616, 1631
Alw21I GWGCWC 2 cut(s) 445, 1134
Alw26I GTCTC 3 cut(s) 169, 1045, 1371
AlwI GGATC 4 cut(s) 174, 983, 996, 1329
Ama87I CYCGRG 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 656, 1412
ApoI RAATTY 2 cut(s) 394, 1167
AseI ATTAAT 2 cut(s) 848, 1086
AsiGI ACCGGT 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 1142
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 974, 1498
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 3 cut(s) 374, 1193, 1435
Bbv12I GWGCWC 2 cut(s) 445, 1134
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 643, 1399
BccI CCATC 7 cut(s) 127, 214, 264, 328, 871, 1328, 1615
BceAI ACGGC 2 cut(s) 170, 1201
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 169, 1045, 1371
BfaI CTAG 2 cut(s) 1478, 1613
BfmI CTRYAG 2 cut(s) 311, 894
BglII AGATCT 2 cut(s) 16, 1525
BisI GCNGC 5 cut(s) 77, 80, 657, 1413, 1640
BlsI GCNGC 5 cut(s) 78, 81, 658, 1414, 1641
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 793, 990
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 655, 950, 1018
BpiI GAAGAC 3 cut(s) 374, 1193, 1435
BpmI CTGGAG 1 cut(s) 697
Bpu10I CCTNAGC 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 1371
BsaJI CCNNGG 1 cut(s) 872
BsaWI WCCGGW 2 cut(s) 377, 475
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 427, 1483, 1512
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 506, 1578
Bse3DI GCAATG 2 cut(s) 111, 990
Bse8I GATNNNNATC 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 872
BseGI GGATG 5 cut(s) 484, 882, 886, 1156, 1364
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 4 cut(s) 295, 427, 1483, 1512
BseMI GCAATG 2 cut(s) 111, 990
BseMII CTCAG 2 cut(s) 153, 436
BseNI ACTGG 2 cut(s) 506, 1578
BseRI GAGGAG 1 cut(s) 1389
BseXI GCAGC 2 cut(s) 643, 1399
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 833
Bsh1236I CGCG 3 cut(s) 12, 82, 1343
BshFI GGCC 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 377
BsiHKAI GWGCWC 2 cut(s) 445, 1134
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 378, 476
BslI CCNNNNNNNGG 4 cut(s) 295, 427, 1483, 1512
BsmAI GTCTC 3 cut(s) 169, 1045, 1371
BsmBI CGTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 1371
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 445, 1134
Bsp13I TCCGGA 1 cut(s) 475
Bsp1407I TGTACA 1 cut(s) 1037
Bsp143I GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
Bsp68I TCGCGA 2 cut(s) 12, 1343
BspACI CCGC 5 cut(s) 77, 80, 654, 911, 1640
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 152, 435
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 3 cut(s) 12, 82, 1343
BspHI TCATGA 2 cut(s) 831, 1324
BspLI GGNNCC 2 cut(s) 793, 990
BspPI GGATC 4 cut(s) 174, 983, 996, 1329
BspQI GCTCTTC 1 cut(s) 450
BspTNI GGTCTC 1 cut(s) 1371
BsrDI GCAATG 2 cut(s) 111, 990
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 1037
BsrI ACTGG 2 cut(s) 506, 1578
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 872
BssMI GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 315, 1519
Bst6I CTCTTC 2 cut(s) 450, 813
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstAUI TGTACA 1 cut(s) 1037
BstDEI CTNAG 3 cut(s) 139, 422, 797
BstENI CCTNNNNNAGG 2 cut(s) 425, 1481
BstF5I GGATG 5 cut(s) 484, 882, 886, 1156, 1364
BstFNI CGCG 3 cut(s) 12, 82, 1343
BstKTI GATC 8 cut(s) 19, 182, 523, 739, 991, 1324, 1483, 1528
BstMAI GTCTC 3 cut(s) 169, 1045, 1371
BstMBI GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
BstMWI GCNNNNNNNGC 7 cut(s) 73, 101, 449, 665, 868, 1028, 1570
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 456, 862
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 311, 894
BstUI CGCG 3 cut(s) 12, 82, 1343
BstV1I GCAGC 2 cut(s) 643, 1399
BstV2I GAAGAC 3 cut(s) 374, 1193, 1435
BstX2I RGATCY 3 cut(s) 16, 988, 1525
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 3 cut(s) 16, 988, 1525
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 5 cut(s) 484, 882, 886, 1156, 1364
BtsIMutI CAGTG 1 cut(s) 1585
BtuMI TCGCGA 2 cut(s) 12, 1343
CciI TCATGA 2 cut(s) 831, 1324
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 1212
Csp6I GTAC 4 cut(s) 37, 967, 1038, 1209
CspAI ACCGGT 1 cut(s) 377
CviAII CATG 7 cut(s) 453, 832, 859, 924, 1147, 1325, 1537
CviQI GTAC 4 cut(s) 37, 967, 1038, 1209
DdeI CTNAG 3 cut(s) 139, 422, 797
DpnI GATC 8 cut(s) 18, 181, 522, 738, 990, 1323, 1482, 1527
DpnII GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
DraI TTTAAA 2 cut(s) 1060, 1110
DraIII CACNNNGTG 1 cut(s) 1100
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 450, 813
EarI CTCTTC 2 cut(s) 450, 813
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 1371
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 443
EcoNI CCTNNNNNAGG 2 cut(s) 425, 1481
EcoRII CCWGG 1 cut(s) 426
EcoT22I ATGCAT 3 cut(s) 591, 943, 1033
EcoT38I GRGCYC 1 cut(s) 445
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 7 cut(s) 456, 835, 862, 927, 1150, 1328, 1540
FatI CATG 7 cut(s) 452, 831, 858, 923, 1146, 1324, 1536
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 5 cut(s) 77, 80, 657, 1413, 1640
FokI GGATG 5 cut(s) 491, 889, 893, 1163, 1371
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 5 cut(s) 77, 80, 657, 1413, 1640
FspBI CTAG 2 cut(s) 1478, 1613
GluI GCNGC 5 cut(s) 77, 80, 657, 1413, 1640
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 697
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 378, 476
HgaI GACGC 1 cut(s) 1212
Hin1II CATG 7 cut(s) 456, 835, 862, 927, 1150, 1328, 1540
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 7 cut(s) 7, 137, 260, 369, 1193, 1423, 1498
HpaII CCGG 2 cut(s) 378, 476
HphI GGTGA 2 cut(s) 974, 1498
Hpy166II GTNNAC 4 cut(s) 136, 715, 763, 1040
Hpy188I TCNGA 7 cut(s) 112, 688, 785, 876, 1181, 1289, 1472
Hpy8I GTNNAC 4 cut(s) 136, 715, 763, 1040
Hpy99I CGWCG 2 cut(s) 64, 67
HpyAV CCTTC 5 cut(s) 50, 107, 512, 1148, 1298
HpyCH4III ACNGT 2 cut(s) 315, 1519
HpyCH4IV ACGT 1 cut(s) 690
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 101, 449, 665, 868, 1028, 1570
HpyF3I CTNAG 3 cut(s) 139, 422, 797
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 7 cut(s) 456, 835, 862, 927, 1150, 1328, 1540
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 5 cut(s) 440, 614, 664, 678, 1129
Lsp1109I GCAGC 2 cut(s) 643, 1399
LweI GCATC 3 cut(s) 655, 950, 1018
MaeI CTAG 2 cut(s) 1478, 1613
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 3 cut(s) 926, 1224, 1486
MalI GATC 8 cut(s) 18, 181, 522, 738, 990, 1323, 1482, 1527
MboI GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 3 cut(s) 16, 988, 1525
MhlI GDGCHC 2 cut(s) 445, 1134
MlyI GAGTC 2 cut(s) 131, 1417
MmeI TCCRAC 1 cut(s) 1501
Mph1103I ATGCAT 3 cut(s) 591, 943, 1033
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 1142
MslI CAYNNNNRTG 1 cut(s) 1329
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 2 cut(s) 378, 476
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 1023
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 3 cut(s) 12, 82, 1343
MwoI GCNNNNNNNGC 7 cut(s) 73, 101, 449, 665, 868, 1028, 1570
NdeII GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
NlaIII CATG 7 cut(s) 456, 835, 862, 927, 1150, 1328, 1540
NlaIV GGNNCC 2 cut(s) 793, 990
NmuCI GTSAC 2 cut(s) 1224, 1486
NruI TCGCGA 2 cut(s) 12, 1343
NsiI ATGCAT 3 cut(s) 591, 943, 1033
NspI RCATGY 2 cut(s) 456, 862
PaeI GCATGC 2 cut(s) 456, 862
PaeR7I CTCGAG 1 cut(s) 200
PagI TCATGA 2 cut(s) 831, 1324
PciSI GCTCTTC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 1142
PfeI GAWTC 5 cut(s) 7, 260, 369, 1193, 1498
PinAI ACCGGT 1 cut(s) 377
PkrI GCNGC 5 cut(s) 78, 81, 658, 1414, 1641
PleI GAGTC 2 cut(s) 131, 1417
PpsI GAGTC 2 cut(s) 131, 1417
PshBI ATTAAT 2 cut(s) 848, 1086
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 793, 990
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 3 cut(s) 16, 988, 1525
RruI TCGCGA 2 cut(s) 12, 1343
RsaI GTAC 4 cut(s) 38, 968, 1039, 1210
RsaNI GTAC 4 cut(s) 37, 967, 1038, 1209
RseI CAYNNNNRTG 1 cut(s) 1329
SacI GAGCTC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 450
SatI GCNGC 5 cut(s) 77, 80, 657, 1413, 1640
Sau3AI GATC 8 cut(s) 16, 179, 520, 736, 988, 1321, 1480, 1525
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 131, 1417
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 445, 1134
SfaNI GCATC 3 cut(s) 655, 950, 1018
SfcI CTRYAG 2 cut(s) 311, 894
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 1329
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SphI GCATGC 2 cut(s) 456, 862
SsiI CCGC 5 cut(s) 77, 80, 654, 911, 1640
SspI AATATT 2 cut(s) 358, 1550
SspMI CTAG 2 cut(s) 1478, 1613
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 315, 1519
TaiI ACGT 1 cut(s) 693
TaqI TCGA 5 cut(s) 168, 201, 276, 756, 1426
TatI WGTACW 2 cut(s) 966, 1037
TauI GCSGC 3 cut(s) 79, 82, 1642
TfiI GAWTC 5 cut(s) 7, 260, 369, 1193, 1498
TscAI CASTG 1 cut(s) 1585
TseFI GTSAC 2 cut(s) 1224, 1486
TseI GCWGC 2 cut(s) 656, 1412
Tsp45I GTSAC 2 cut(s) 1224, 1486
TspDTI ATGAA 9 cut(s) 624, 820, 903, 912, 1135, 1167, 1179, 1271, 1341
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 1585
VpaK11BI GGWCC 1 cut(s) 116
VspI ATTAAT 2 cut(s) 848, 1086
XagI CCTNNNNNAGG 2 cut(s) 425, 1481
XapI RAATTY 2 cut(s) 394, 1167
XceI RCATGY 2 cut(s) 456, 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 1142
XspI CTAG 2 cut(s) 1478, 1613
Zsp2I ATGCAT 3 cut(s) 591, 943, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.