FvH4_1g00120

Poly(ADP-ribose) glycohydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
75953 .. 82044
6092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00120.t4

Sequence Viewer

Length: 1536 bp
ATGGAAGAGAGGGAGGAGTTGAAGTCAATACTAGGCTACTTGCCGGTGGTGGCACGGAGCCGGAGTCTTTTCTGGCCATCACAGGCGGTGGAGACACTCAAGGACTTGGGCAGGGGTCGTGTCAATTCCGGGGAGGTTCTATTCACAGCCATCTCCGACCTCAGGCGCTCTCTTTCGGCCTCCACCTCTGATCCTCTCACTCCTGGTGCCGCAGACGGATACGCCCTCTTCTTCGATGAGATCATGTCCAGGGAGGAATCTGGCAAGTGGTTTGGAGAGGTGTTACCCGCATTAGCAAATTTGGTTTTGCGGTTGCCCTCTTTGTTGCAAGTTCACTATCAAAATGCAGATGCCCGACTCAATACTGCTCTTCGTTTACTTGATTCACAACAACCCGGATTAGTGCTCCTCAGCCAGGAACTAATTAGTGCTCTTCTTGGGTGCTCTCTATTTTGTTTGTTCCCAGTCACTGATAGAAGTGCCAAGCATCTCCCAACAATCAATTTTGATCATTTGTTTGCTGCTCTGTATGACAGTTATAATCAAAAACAGGAGAGTAAGATATGGTGCATTATACACTACTTTGAAAAGATAACTTCACGCATGCCTATGGGTTTTGTCTCGTTTGAGCGGAAAGTACTTCCTCTGGAACCAACTCCCCTAAGAATTTCTTATCCGAAAGCTGAGTTTTGGAGCAATTCAGTCATTCCACTCTGCCGTTTTGAGGTTCACAGGTCAGGCTTCATAGAAGATCAATCAAGTGGAGCTTTGGAAGTTGATTTTGCAAACAAGTATATAGGAGGTGGTGCTCTTCATAGGGGCTGTGTACAGGAAGAGATCCGTTTCATGATCAACCCCGAGTTAATTGCTAGCATGCTGTTCATGCCATCTATGGCAGATAATGAGGCTATAGAAATTGTTGGTGCGGAAAGATTTTCGAATTATACAGGGTATGCTTCTTCATTTCGATTTTGTGGTGACTATGTGGACGAAAGGGATTCAGACTCTCTTGGAAGACGTAAAACCAGGATTATTGCAATAGACGCATTATGCAGCCCAGGGATGAAACAGTATAAACAAGAGTTACTCCTCCGGGAGACCAATAAGGCCTTCTGTGGCTTTGTTCCTCGATCGGGATATCGGGAGAACAATAGATTAGTTCGTGAGAATGAACTCTGTTCAGTCGATTCTACCGAGATTCAGTCTTTGGATTATGTGGATGATATTGGGATTGCAACTGGGAATTGGGGATGCGGTGCTTTTGGAGGAGATCCTAAAGTGAAGACCATAGTTCAATGGCTTGCTGCATCTCAGGCACGAAGACCTTTGATTTCATACTACACTTTTGACATGAAGGCATTGGAAAACCTTGACCAGGTAAGCCGATGGATACAGCAGCACCAATGGACAGTAGGAGATCTCTGGGATCTGTTGGTGGAGTACTCATTGCAGAGATGGAAGGGAGAGACTAATGAAGGATTCTTTACATGGCTTCTTCCATCTCTACTTGCCTCTAATACAGACATGTTGGATTGA

Protein Analysis

512

Amino Acids

57.86

Weight (kDa)

5.23

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PARG_cat_N PF20811 82 - 211 3.8e-36 Poly (ADP-ribose) glycohydrolase (PARG), helical domain
PARG_cat_C PF05028 229 - 455 1.1e-84 Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 631
AciI CCGC 7 cut(s) 86, 210, 288, 310, 631, 926, 1254
AclWI GGATC 4 cut(s) 185, 832, 1265, 1434
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 2 cut(s) 298, 666
AfaI GTAC 3 cut(s) 639, 828, 1442
AfiI CCNNNNNNNGG 5 cut(s) 162, 415, 724, 1133, 1375
AflIII ACRYGT 1 cut(s) 1524
AgsI TTSAA 3 cut(s) 22, 587, 1295
AjnI CCWGG 6 cut(s) 202, 248, 414, 1025, 1057, 1374
AjuI GAANNNNNNNTTGG 2 cut(s) 1094, 1126
AluBI AGCT 2 cut(s) 683, 767
AluI AGCT 2 cut(s) 683, 767
Alw21I GWGCWC 4 cut(s) 408, 433, 446, 811
Alw26I GTCTC 4 cut(s) 86, 625, 1091, 1460
AlwI GGATC 4 cut(s) 185, 832, 1265, 1434
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 857
AoxI GGCC 3 cut(s) 74, 177, 1107
ApeKI GCWGC 4 cut(s) 521, 1053, 1304, 1396
ApoI RAATTY 2 cut(s) 298, 666
AspLEI GCGC 1 cut(s) 168
AsuC2I CCSGG 3 cut(s) 130, 396, 1094
AsuHPI GGTGA 1 cut(s) 989
AsuII TTCGAA 1 cut(s) 938
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 857
AxyI CCTNAGG 1 cut(s) 161
BalI TGGCCA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 3 cut(s) 1021, 1289, 1327
Bbv12I GWGCWC 4 cut(s) 408, 433, 446, 811
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 4 cut(s) 508, 1065, 1291, 1408
BccI CCATC 6 cut(s) 85, 158, 895, 1380, 1449, 1507
BceAI ACGGC 1 cut(s) 702
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 6 cut(s) 204, 250, 416, 1027, 1059, 1376
BciVI GTATCC 2 cut(s) 212, 1383
BclI TGATCA 2 cut(s) 508, 849
BcnI CCSGG 3 cut(s) 130, 396, 1094
BcoDI GTCTC 4 cut(s) 86, 625, 1091, 1460
BfaI CTAG 2 cut(s) 32, 870
BfmI CTRYAG 1 cut(s) 909
BfoI RGCGCY 1 cut(s) 169
BfuI GTATCC 2 cut(s) 212, 1383
BglII AGATCT 1 cut(s) 1417
BisI GCNGC 5 cut(s) 210, 522, 1054, 1305, 1397
BlsI GCNGC 5 cut(s) 211, 523, 1055, 1306, 1398
BmcAI AGTACT 2 cut(s) 639, 1442
Bme1390I CCNGG 9 cut(s) 130, 204, 250, 396, 416, 1027, 1059, 1094, 1376
BmeT110I CYCGRG 1 cut(s) 857
BmiI GGNNCC 3 cut(s) 59, 208, 651
BmrFI CCNGG 9 cut(s) 130, 204, 250, 396, 416, 1027, 1059, 1094, 1376
BmrI ACTGGG 2 cut(s) 458, 1248
BmsI GCATC 4 cut(s) 340, 496, 1241, 1316
BmtI GCTAGC 1 cut(s) 873
BmuI ACTGGG 2 cut(s) 458, 1248
BpiI GAAGAC 3 cut(s) 1021, 1289, 1327
Bpu10I CCTNAGC 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 3 cut(s) 130, 396, 1094
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 4 cut(s) 129, 249, 1057, 1058
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 49, 79
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 415, 724, 1133, 1375
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 464, 1243
Bse21I CCTNAGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 1445
BseBI CCWGG 6 cut(s) 204, 250, 416, 1027, 1059, 1376
BseDI CCNNGG 4 cut(s) 129, 249, 1057, 1058
BseGI GGATG 3 cut(s) 1068, 1225, 1256
BseLI CCNNNNNNNGG 5 cut(s) 162, 415, 724, 1133, 1375
BseMI GCAATG 1 cut(s) 1445
BseMII CTCAG 4 cut(s) 175, 424, 675, 1325
BseNI ACTGG 2 cut(s) 464, 1243
BseRI GAGGAG 4 cut(s) 29, 398, 1079, 1281
BseXI GCAGC 4 cut(s) 508, 1065, 1291, 1408
Bsh1285I CGRYCG 1 cut(s) 1133
BshFI GGCC 3 cut(s) 76, 179, 1109
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 1133
BsiHKAI GWGCWC 4 cut(s) 408, 433, 446, 811
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 5 cut(s) 44, 61, 129, 396, 1093
BslI CCNNNNNNNGG 5 cut(s) 162, 415, 724, 1133, 1375
BsmAI GTCTC 4 cut(s) 86, 625, 1091, 1460
BsnI GGCC 3 cut(s) 76, 179, 1109
Bso31I GGTCTC 1 cut(s) 1091
BsoBI CYCGRG 1 cut(s) 857
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 4 cut(s) 408, 433, 446, 811
Bsp1407I TGTACA 1 cut(s) 826
BspACI CCGC 7 cut(s) 86, 210, 288, 310, 631, 926, 1254
BspANI GGCC 3 cut(s) 76, 179, 1109
BspCNI CTCAG 4 cut(s) 174, 423, 676, 1324
BspHI TCATGA 1 cut(s) 846
BspLI GGNNCC 3 cut(s) 59, 208, 651
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 4 cut(s) 185, 832, 1265, 1434
BspQI GCTCTTC 3 cut(s) 375, 438, 816
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 1445
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 2 cut(s) 464, 1243
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 129, 249, 1057, 1058
Bst2UI CCWGG 6 cut(s) 204, 250, 416, 1027, 1059, 1376
Bst4CI ACNGT 3 cut(s) 536, 1071, 1411
Bst6I CTCTTC 5 cut(s) 233, 375, 438, 816, 828
BstAUI TGTACA 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 4 cut(s) 605, 871, 875, 1302
BstDEI CTNAG 5 cut(s) 161, 410, 662, 684, 1311
BstENI CCTNNNNNAGG 2 cut(s) 413, 1373
BstF5I GGATG 3 cut(s) 1068, 1225, 1256
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstMAI GTCTC 4 cut(s) 86, 625, 1091, 1460
BstMCI CGRYCG 1 cut(s) 1133
BstMWI GCNNNNNNNGC 3 cut(s) 883, 1043, 1313
BstNI CCWGG 6 cut(s) 204, 250, 416, 1027, 1059, 1376
BstNSI RCATGY 3 cut(s) 607, 877, 1528
BstSCI CCNGG 9 cut(s) 128, 202, 248, 394, 414, 1025, 1057, 1092, 1374
BstSFI CTRYAG 1 cut(s) 909
BstV1I GCAGC 4 cut(s) 508, 1065, 1291, 1408
BstV2I GAAGAC 3 cut(s) 1021, 1289, 1327
BstX2I RGATCY 4 cut(s) 837, 1270, 1417, 1426
BstYI RGATCY 4 cut(s) 837, 1270, 1417, 1426
Bsu36I CCTNAGG 1 cut(s) 161
BsuI GTATCC 2 cut(s) 212, 1383
BsuRI GGCC 3 cut(s) 76, 179, 1109
BtsCI GGATG 3 cut(s) 1068, 1225, 1256
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 4 cut(s) 605, 871, 875, 1302
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 846
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 1 cut(s) 1052
CsiI ACCWGGT 1 cut(s) 1374
Csp6I GTAC 3 cut(s) 638, 827, 1441
CviAII CATG 8 cut(s) 244, 604, 847, 874, 883, 1351, 1488, 1525
CviQI GTAC 3 cut(s) 638, 827, 1441
DdeI CTNAG 5 cut(s) 161, 410, 662, 684, 1311
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 5 cut(s) 233, 375, 438, 816, 828
EarI CTCTTC 5 cut(s) 233, 375, 438, 816, 828
Eco147I AGGCCT 1 cut(s) 1109
Eco31I GGTCTC 1 cut(s) 1091
Eco32I GATATC 1 cut(s) 1139
Eco81I CCTNAGG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 857
EcoNI CCTNNNNNAGG 2 cut(s) 413, 1373
EcoRII CCWGG 6 cut(s) 202, 248, 414, 1025, 1057, 1374
EcoRV GATATC 1 cut(s) 1139
FaeI CATG 8 cut(s) 247, 607, 850, 877, 886, 1354, 1491, 1528
FalI AAGNNNNNCTT 4 cut(s) 655, 687, 751, 783
FatI CATG 8 cut(s) 243, 603, 846, 873, 882, 1350, 1487, 1524
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 2 cut(s) 508, 849
Fnu4HI GCNGC 5 cut(s) 210, 522, 1054, 1305, 1397
FokI GGATG 3 cut(s) 1075, 1232, 1263
Fsp4HI GCNGC 5 cut(s) 210, 522, 1054, 1305, 1397
FspBI CTAG 2 cut(s) 32, 870
GlaI GCGC 1 cut(s) 167
GluI GCNGC 5 cut(s) 210, 522, 1054, 1305, 1397
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 3 cut(s) 76, 179, 1109
HapII CCGG 5 cut(s) 44, 61, 129, 396, 1093
HgaI GACGC 1 cut(s) 1052
HhaI GCGC 1 cut(s) 168
Hin1II CATG 8 cut(s) 247, 607, 850, 877, 886, 1354, 1491, 1528
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 9 cut(s) 64, 257, 357, 383, 998, 1004, 1187, 1198, 1479
HpaII CCGG 5 cut(s) 44, 61, 129, 396, 1093
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 5 cut(s) 334, 377, 730, 827, 988
Hpy188I TCNGA 4 cut(s) 157, 190, 678, 1003
Hpy188III TCNNGA 5 cut(s) 647, 847, 1134, 1142, 1163
Hpy8I GTNNAC 5 cut(s) 334, 377, 730, 827, 988
HpyAV CCTTC 4 cut(s) 1120, 1348, 1453, 1469
HpyCH4III ACNGT 3 cut(s) 536, 1071, 1411
HpyCH4IV ACGT 1 cut(s) 1018
HpyCH4V TGCA 9 cut(s) 328, 347, 570, 785, 1037, 1053, 1235, 1307, 1450
HpyF10VI GCNNNNNNNGC 3 cut(s) 883, 1043, 1313
HpyF3I CTNAG 5 cut(s) 161, 410, 662, 684, 1311
HpySE526I ACGT 1 cut(s) 1018
Hsp92II CATG 8 cut(s) 247, 607, 850, 877, 886, 1354, 1491, 1528
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 508, 849
LguI GCTCTTC 3 cut(s) 375, 438, 816
LmnI GCTCC 4 cut(s) 57, 411, 693, 764
Lsp1109I GCAGC 4 cut(s) 508, 1065, 1291, 1408
LweI GCATC 4 cut(s) 340, 496, 1241, 1316
MabI ACCWGGT 1 cut(s) 1374
MaeI CTAG 2 cut(s) 32, 870
MaeII ACGT 1 cut(s) 1018
MaeIII GTNAC 4 cut(s) 282, 466, 977, 1083
MbiI CCGCTC 1 cut(s) 631
MflI RGATCY 4 cut(s) 837, 1270, 1417, 1426
MhlI GDGCHC 4 cut(s) 408, 433, 446, 811
MlsI TGGCCA 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 3 cut(s) 73, 351, 998
MmeI TCCRAC 2 cut(s) 180, 1509
Mox20I TGGCCA 1 cut(s) 76
MscI TGGCCA 1 cut(s) 76
MseI TTAA 1 cut(s) 863
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 76
MspI CCGG 5 cut(s) 44, 61, 129, 396, 1093
MspR9I CCNGG 9 cut(s) 130, 204, 250, 396, 416, 1027, 1059, 1094, 1376
MvaI CCWGG 6 cut(s) 204, 250, 416, 1027, 1059, 1376
MwoI GCNNNNNNNGC 3 cut(s) 883, 1043, 1313
NciI CCSGG 3 cut(s) 130, 396, 1094
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 8 cut(s) 247, 607, 850, 877, 886, 1354, 1491, 1528
NlaIV GGNNCC 3 cut(s) 59, 208, 651
NmuCI GTSAC 2 cut(s) 466, 977
NspI RCATGY 3 cut(s) 607, 877, 1528
NspV TTCGAA 1 cut(s) 938
PaeI GCATGC 2 cut(s) 607, 877
PagI TCATGA 1 cut(s) 846
PasI CCCWGGG 1 cut(s) 1058
PceI AGGCCT 1 cut(s) 1109
PciI ACATGT 1 cut(s) 1524
PciSI GCTCTTC 3 cut(s) 375, 438, 816
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PfeI GAWTC 6 cut(s) 257, 383, 998, 1187, 1198, 1479
PfoI TCCNGGA 1 cut(s) 1092
PkrI GCNGC 5 cut(s) 211, 523, 1055, 1306, 1398
Ple19I CGATCG 1 cut(s) 1133
PleI GAGTC 3 cut(s) 72, 351, 998
PpsI GAGTC 3 cut(s) 72, 351, 998
PscI ACATGT 1 cut(s) 1524
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 6 cut(s) 202, 248, 414, 1025, 1057, 1374
PspGI CCWGG 6 cut(s) 202, 248, 414, 1025, 1057, 1374
PspN4I GGNNCC 3 cut(s) 59, 208, 651
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 4 cut(s) 837, 1270, 1417, 1426
PvuI CGATCG 1 cut(s) 1133
RsaI GTAC 3 cut(s) 639, 828, 1442
RsaNI GTAC 3 cut(s) 638, 827, 1441
RseI CAYNNNNRTG 1 cut(s) 608
SapI GCTCTTC 3 cut(s) 375, 438, 816
SaqAI TTAA 1 cut(s) 863
SatI GCNGC 5 cut(s) 210, 522, 1054, 1305, 1397
ScaI AGTACT 2 cut(s) 639, 1442
SchI GAGTC 3 cut(s) 73, 351, 998
ScrFI CCNGG 9 cut(s) 130, 204, 250, 396, 416, 1027, 1059, 1094, 1376
SduI GDGCHC 4 cut(s) 408, 433, 446, 811
SexAI ACCWGGT 1 cut(s) 1374
SfaNI GCATC 4 cut(s) 340, 496, 1241, 1316
SfcI CTRYAG 1 cut(s) 909
SfuI TTCGAA 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 2 cut(s) 607, 877
SseBI AGGCCT 1 cut(s) 1109
SsiI CCGC 7 cut(s) 86, 210, 288, 310, 631, 926, 1254
SspMI CTAG 2 cut(s) 32, 870
StuI AGGCCT 1 cut(s) 1109
StyD4I CCNGG 9 cut(s) 128, 202, 248, 394, 414, 1025, 1057, 1092, 1374
TaaI ACNGT 3 cut(s) 536, 1071, 1411
TaiI ACGT 1 cut(s) 1021
TaqI TCGA 5 cut(s) 234, 938, 967, 1129, 1185
TatI WGTACW 3 cut(s) 637, 826, 1440
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 6 cut(s) 257, 383, 998, 1187, 1198, 1479
Tru1I TTAA 1 cut(s) 863
Tru9I TTAA 1 cut(s) 863
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 466, 977
TseI GCWGC 4 cut(s) 521, 1053, 1304, 1396
Tsp45I GTSAC 2 cut(s) 466, 977
TspGWI ACGGA 3 cut(s) 70, 231, 830
TspRI CASTG 1 cut(s) 475
XagI CCTNNNNNAGG 2 cut(s) 413, 1373
XapI RAATTY 2 cut(s) 298, 666
XceI RCATGY 3 cut(s) 607, 877, 1528
XspI CTAG 2 cut(s) 32, 870
ZrmI AGTACT 2 cut(s) 639, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.