Rroxscaffold_2G00156100

Poly(ADP-ribose) glycohydrolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
92566289 .. 92569986
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156100.1

Sequence Viewer

Length: 1308 bp
ATGGAAGAGAGGGAGGACCTGAAGTCAATATTAGCGTTCTTACCGGTGGTTGCACGGAGCTGGAGTCTTTTCTGGCCATCCCAAGTGGTGGAGACACTCAAGGACTTGGCCAGAGGTCCCCAGCACAGTGGGGTCAATTCCGGGGAGGTTTTATTCACAGCCATCTCCGACCTCAGGCACTCTCTCTCTCTCTCCTCCTCTCATCCTCTCACTCCTTGTGCCGCTGACGGATACGCCCTCTTCTTCGATGAGATCATGCCCAGGGAGGAATCTGGAAAATGGTTCGGAGAAGTAGTCCCCGCATTAGCAAATTTGCTTTTGCGGTTGCCCTCTTTGTTACAAGTTCACTATCAAAATGCAGATGGGCTTATTAATGGACTCAATACTGCTCTTCGTCTACTTGATTCACAACAACCAGGAATAGTGTTCCTCAGCCAGGAACTAATTAGTGCTCTTCTTGGGTGCTCTCTATTTTGTTTGTTCCCAGTCATTGATAGAAGTGCCAAACATCTCCCGACAATCAACTTTGATAATTTGTTTGACGCTCTATACGACAGTCATAATCTCAAGCAGGAGAGTAAGATATGGTGCATTATACACTACTTTGAAAAGATAACTTCACGTATGCCTACTGGTTTTGTGTCGTTCGAGCGGAAAGTACTTCCTTTGGAACAAACTCCACTAAGAATTTCTTATCCGAAGGCTGAGTTTTGGAGCAATTCAGTCATTCCACTCTGCCGTTTTGAGGTTCACAGGTCAGGCTTGATAGAAGATCAATCAAGTGGAGCTCTCGAAGTTGATTTTGCAAACAAGTATATAGGAGGTGGTGCTCTTCATAGGGGCTGCGTACAGTGGTGTAGGTATGCTTCTTCATTTCGTTTTTCTGGTGACTATGTGGATGAAAGGGATGCAGACTCTTTTGGAAGACGTAAAACCAGGATTATTGCAATAGATGCGTTATGCAGCCCAGGGATGAAACAGTATAAACAAGAGTTAATCCTCCGGGAGACCAATAAGGCGTTCTGTGGCTTTCTTCATCAATCGAAATATCAGGAGTACAGTAGATTGGTTCGAGAGAATGAACGACTGAACAGAGATTCTTCTATGATTCAATCTTTGGATTATGCGGATGATATTGGGATTGCAACTGGGAATTGGGGATGTGGTGCTTTCGGAGGAGATCCTGAAGTGAAGGCCATAGTTCAATGGCTTGCTGCATCTCAGGTAGTTGTTTTTAGCCTTCATAACAAGTATGGGAAGAGATGGAGGTTTTCTATTTTCAGAAAAGAAAATTTTGAAAAGCCTTGA

Protein Analysis

435

Amino Acids

49.33

Weight (kDa)

6.61

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PARG_cat_N PF20811 87 - 218 4.7e-35 Poly (ADP-ribose) glycohydrolase (PARG), helical domain
PARG_cat_C PF05028 236 - 284 3.7e-13 Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold
PARG_cat_C PF05028 288 - 409 5.2e-37 Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 397
AciI CCGC 5 cut(s) 222, 300, 322, 652, 1127
AclWI GGATC 1 cut(s) 1175
AcoI YGGCCR 2 cut(s) 74, 108
AcsI RAATTY 3 cut(s) 310, 687, 1291
AcuI CTGAAG 2 cut(s) 41, 1206
AfaI GTAC 3 cut(s) 660, 849, 1058
AfiI CCNNNNNNNGG 4 cut(s) 88, 174, 436, 745
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 4 cut(s) 608, 1112, 1205, 1298
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 5 cut(s) 260, 415, 435, 935, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AluBI AGCT 2 cut(s) 60, 788
AluI AGCT 2 cut(s) 60, 788
Alw21I GWGCWC 4 cut(s) 454, 467, 790, 832
Alw26I GTCTC 2 cut(s) 86, 1001
AlwI GGATC 1 cut(s) 1175
AoxI GGCC 3 cut(s) 74, 108, 1194
ApeKI GCWGC 3 cut(s) 843, 963, 1214
ApoI RAATTY 3 cut(s) 310, 687, 1291
AseI ATTAAT 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 16, 116
AsuC2I CCSGG 2 cut(s) 142, 1004
AsuHPI GGTGA 1 cut(s) 899
AvaII GGWCC 2 cut(s) 16, 116
AxyI CCTNAGG 1 cut(s) 173
BalI TGGCCA 2 cut(s) 76, 110
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 850, 882
BbsI GAAGAC 1 cut(s) 931
Bbv12I GWGCWC 4 cut(s) 454, 467, 790, 832
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 830, 975, 1201
BccI CCATC 4 cut(s) 85, 170, 356, 1257
BceAI ACGGC 1 cut(s) 723
BciT130I CCWGG 5 cut(s) 262, 417, 437, 937, 969
BciVI GTATCC 1 cut(s) 224
BcnI CCSGG 2 cut(s) 142, 1004
BcoDI GTCTC 2 cut(s) 86, 1001
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 4 cut(s) 222, 844, 964, 1215
BlsI GCNGC 4 cut(s) 223, 845, 965, 1216
BmcAI AGTACT 1 cut(s) 660
Bme1390I CCNGG 7 cut(s) 142, 262, 417, 437, 937, 969, 1004
Bme18I GGWCC 2 cut(s) 16, 116
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 16, 116
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 7 cut(s) 142, 262, 417, 437, 937, 969, 1004
BmrI ACTGGG 2 cut(s) 479, 1158
BmsI GCATC 3 cut(s) 898, 943, 1226
BmuI ACTGGG 2 cut(s) 479, 1158
BpiI GAAGAC 1 cut(s) 931
BpmI CTGGAG 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 83, 551
BpuMI CCSGG 2 cut(s) 142, 1004
BsaAI YACGTR 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 5 cut(s) 141, 260, 261, 967, 968
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 279, 309
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 174, 436, 745
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 485, 637, 1153
Bse21I CCTNAGG 1 cut(s) 173
BseBI CCWGG 5 cut(s) 262, 417, 437, 937, 969
BseDI CCNNGG 5 cut(s) 141, 260, 261, 967, 968
BseGI GGATG 7 cut(s) 77, 202, 904, 913, 978, 1135, 1166
BseLI CCNNNNNNNGG 4 cut(s) 88, 174, 436, 745
BseMII CTCAG 4 cut(s) 187, 445, 696, 1235
BseNI ACTGG 3 cut(s) 485, 637, 1153
BseRI GAGGAG 3 cut(s) 184, 187, 1191
BseXI GCAGC 3 cut(s) 830, 975, 1201
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 3 cut(s) 76, 110, 1196
BshTI ACCGGT 1 cut(s) 43
BsiHKAI GWGCWC 4 cut(s) 454, 467, 790, 832
BsiSI CCGG 3 cut(s) 44, 141, 1003
BslFI GGGAC 2 cut(s) 102, 281
BslI CCNNNNNNNGG 4 cut(s) 88, 174, 436, 745
BsmAI GTCTC 2 cut(s) 86, 1001
BsmFI GGGAC 2 cut(s) 102, 281
BsnI GGCC 3 cut(s) 76, 110, 1196
Bso31I GGTCTC 1 cut(s) 1001
Bsp1286I GDGCHC 4 cut(s) 454, 467, 790, 832
Bsp143I GATC 3 cut(s) 252, 772, 1180
BspACI CCGC 5 cut(s) 222, 300, 322, 652, 1127
BspANI GGCC 3 cut(s) 76, 110, 1196
BspCNI CTCAG 4 cut(s) 186, 444, 697, 1234
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 1175
BspQI GCTCTTC 3 cut(s) 396, 459, 837
BspTNI GGTCTC 1 cut(s) 1001
BsrBI CCGCTC 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 3 cut(s) 485, 637, 1153
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 5 cut(s) 141, 260, 261, 967, 968
BssMI GATC 3 cut(s) 252, 772, 1180
Bst2UI CCWGG 5 cut(s) 262, 417, 437, 937, 969
Bst4CI ACNGT 5 cut(s) 128, 557, 852, 981, 1061
Bst6I CTCTTC 5 cut(s) 245, 396, 459, 837, 1253
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 1212
BstDEI CTNAG 5 cut(s) 173, 431, 683, 705, 1221
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 7 cut(s) 77, 202, 904, 913, 978, 1135, 1166
BstKTI GATC 3 cut(s) 255, 775, 1183
BstMAI GTCTC 2 cut(s) 86, 1001
BstMBI GATC 3 cut(s) 252, 772, 1180
BstMWI GCNNNNNNNGC 1 cut(s) 953
BstNI CCWGG 5 cut(s) 262, 417, 437, 937, 969
BstSCI CCNGG 7 cut(s) 140, 260, 415, 435, 935, 967, 1002
BstV1I GCAGC 3 cut(s) 830, 975, 1201
BstV2I GAAGAC 1 cut(s) 931
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 1 cut(s) 1180
Bsu36I CCTNAGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 3 cut(s) 76, 110, 1196
BtsCI GGATG 7 cut(s) 77, 202, 904, 913, 978, 1135, 1166
BtsIMutI CAGTG 2 cut(s) 133, 857
Cac8I GCNNGC 1 cut(s) 1212
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 16, 116
CseI GACGC 1 cut(s) 551
Csp6I GTAC 3 cut(s) 659, 848, 1057
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 1 cut(s) 256
CviQI GTAC 3 cut(s) 659, 848, 1057
DdeI CTNAG 5 cut(s) 173, 431, 683, 705, 1221
DpnI GATC 3 cut(s) 254, 774, 1182
DpnII GATC 3 cut(s) 252, 772, 1180
DriI GACNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 74, 108
Eam1104I CTCTTC 5 cut(s) 245, 396, 459, 837, 1253
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 5 cut(s) 245, 396, 459, 837, 1253
Ecl136II GAGCTC 1 cut(s) 788
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 2 cut(s) 16, 116
Eco53kI GAGCTC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 41, 1206
Eco81I CCTNAGG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 788
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 2 cut(s) 16, 116
EcoRII CCWGG 5 cut(s) 260, 415, 435, 935, 967
EcoT38I GRGCYC 1 cut(s) 790
FaeI CATG 1 cut(s) 259
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 2 cut(s) 102, 281
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 307
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 222, 844, 964, 1215
FokI GGATG 7 cut(s) 64, 189, 911, 920, 985, 1142, 1173
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 222, 844, 964, 1215
GluI GCNGC 4 cut(s) 222, 844, 964, 1215
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 3 cut(s) 76, 110, 1196
HapII CCGG 3 cut(s) 44, 141, 1003
HgaI GACGC 1 cut(s) 551
Hin1II CATG 1 cut(s) 259
HinfI GANTC 7 cut(s) 64, 269, 378, 404, 914, 1097, 1108
HpaII CCGG 3 cut(s) 44, 141, 1003
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 3 cut(s) 346, 398, 751
Hpy188I TCNGA 5 cut(s) 169, 287, 699, 1175, 1283
Hpy188III TCNNGA 6 cut(s) 273, 514, 791, 1052, 1073, 1184
Hpy8I GTNNAC 3 cut(s) 346, 398, 751
HpyAV CCTTC 3 cut(s) 694, 1186, 1250
HpyCH4III ACNGT 5 cut(s) 128, 557, 852, 981, 1061
HpyCH4IV ACGT 2 cut(s) 622, 928
HpyCH4V TGCA 9 cut(s) 53, 359, 591, 806, 911, 947, 963, 1145, 1217
HpyF10VI GCNNNNNNNGC 1 cut(s) 953
HpyF3I CTNAG 5 cut(s) 173, 431, 683, 705, 1221
HpySE526I ACGT 2 cut(s) 622, 928
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 3 cut(s) 252, 772, 1180
LguI GCTCTTC 3 cut(s) 396, 459, 837
LmnI GCTCC 3 cut(s) 57, 714, 785
Lsp1109I GCAGC 3 cut(s) 830, 975, 1201
LweI GCATC 3 cut(s) 898, 943, 1226
MaeII ACGT 2 cut(s) 622, 928
MaeIII GTNAC 2 cut(s) 336, 887
MalI GATC 3 cut(s) 254, 774, 1182
MbiI CCGCTC 1 cut(s) 652
MboI GATC 3 cut(s) 252, 772, 1180
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 4 cut(s) 454, 467, 790, 832
MlsI TGGCCA 2 cut(s) 76, 110
MluCI AATT 8 cut(s) 136, 310, 444, 532, 687, 718, 1153, 1291
MluNI TGGCCA 2 cut(s) 76, 110
MlyI GAGTC 3 cut(s) 73, 372, 908
MmeI TCCRAC 1 cut(s) 192
Mox20I TGGCCA 2 cut(s) 76, 110
MscI TGGCCA 2 cut(s) 76, 110
MseI TTAA 2 cut(s) 372, 995
Msp20I TGGCCA 2 cut(s) 76, 110
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 44, 141, 1003
MspR9I CCNGG 7 cut(s) 142, 262, 417, 437, 937, 969, 1004
MvaI CCWGG 5 cut(s) 262, 417, 437, 937, 969
MwoI GCNNNNNNNGC 1 cut(s) 953
NciI CCSGG 2 cut(s) 142, 1004
NdeII GATC 3 cut(s) 252, 772, 1180
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 887
PasI CCCWGGG 2 cut(s) 261, 968
PciSI GCTCTTC 3 cut(s) 396, 459, 837
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 4 cut(s) 269, 404, 1097, 1108
PflMI CCANNNNNTGG 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 1002
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 223, 845, 965, 1216
PleI GAGTC 3 cut(s) 72, 372, 908
PpsI GAGTC 3 cut(s) 72, 372, 908
Ppu21I YACGTR 1 cut(s) 623
PpuMI RGGWCCY 2 cut(s) 16, 116
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 790
Psp5II RGGWCCY 2 cut(s) 16, 116
Psp6I CCWGG 5 cut(s) 260, 415, 435, 935, 967
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 5 cut(s) 260, 415, 435, 935, 967
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 16, 116
PspPPI RGGWCCY 2 cut(s) 16, 116
PsuI RGATCY 1 cut(s) 1180
RsaI GTAC 3 cut(s) 660, 849, 1058
RsaNI GTAC 3 cut(s) 659, 848, 1057
SacI GAGCTC 1 cut(s) 790
SapI GCTCTTC 3 cut(s) 396, 459, 837
SaqAI TTAA 2 cut(s) 372, 995
SatI GCNGC 4 cut(s) 222, 844, 964, 1215
Sau3AI GATC 3 cut(s) 252, 772, 1180
Sau96I GGNCC 2 cut(s) 16, 116
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 3 cut(s) 73, 372, 908
ScrFI CCNGG 7 cut(s) 142, 262, 417, 437, 937, 969, 1004
SduI GDGCHC 4 cut(s) 454, 467, 790, 832
SfaNI GCATC 3 cut(s) 898, 943, 1226
SinI GGWCC 2 cut(s) 16, 116
SmlI CTYRAG 2 cut(s) 98, 566
SmoI CTYRAG 2 cut(s) 98, 566
Sse9I AATT 8 cut(s) 136, 310, 444, 532, 687, 718, 1153, 1291
SsiI CCGC 5 cut(s) 222, 300, 322, 652, 1127
SspI AATATT 1 cut(s) 30
SstI GAGCTC 1 cut(s) 790
StyD4I CCNGG 7 cut(s) 140, 260, 415, 435, 935, 967, 1002
TaaI ACNGT 5 cut(s) 128, 557, 852, 981, 1061
TaiI ACGT 2 cut(s) 625, 931
TaqI TCGA 5 cut(s) 246, 648, 792, 1043, 1072
TasI AATT 8 cut(s) 136, 310, 444, 532, 687, 718, 1153, 1291
TatI WGTACW 2 cut(s) 658, 1056
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 4 cut(s) 269, 404, 1097, 1108
Tru1I TTAA 2 cut(s) 372, 995
Tru9I TTAA 2 cut(s) 372, 995
TscAI CASTG 2 cut(s) 133, 857
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 3 cut(s) 843, 963, 1214
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 7 cut(s) 824, 861, 915, 989, 1025, 1095, 1232
TspGWI ACGGA 2 cut(s) 70, 243
TspRI CASTG 2 cut(s) 133, 857
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 16, 116
VspI ATTAAT 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 3 cut(s) 310, 687, 1291
XmiI GTMKAC 1 cut(s) 397
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.