Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004038

Physical Location & Seq

Genomic Coordinates Reverse (-)

54826242 .. 54826877

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAGAGAAGAAACAAGAGGCTTACCCTTTCGCACCATACGCTAATGGGCAAGCCATGGCCAGAAGCGATGCAAAATCTTCGAGAGCTCATTCCGATGATGAGCTACGCAGAAAGAAGCGCATCAAATGTCTAATCTACATCGTGGTTTTCGCTGTGTTCCAGATCATAGTCATAACTGTTTTGGCACTCACTGTCATGCGTGTCAAGAGCCCCAAGTTCCGTATCCAAGCCATCACGGTTGAGGAACTCAACACCACGTCCAATCCCTCGCTTACTATGAGGTTCATTGCTGAAGTTTCTGTCAAGAACCCTAATTTCGGGCGGTACAAGTATGATCAGACCTCCATTAGCTTTATTTATAAGGGCACCCAAGTTGGCGATGCTGTTGTTCCTCAGGAAACGGCTAGGACTAAAGCGACCAGGAAGACGATCGTGTCCGGGGCTGTGACTACCATTAATTCGAACTTGGCCAGTGATATAAGTTCAGGGTCTATGACGCTTAGCACGTACTCGAAGATAAACGGGAAGGTGTACTTGATGAACATGATCAAGAAGAAGAAGTCAGCTGAGATGAAATGCACCATGATCGTTAATTTGACAACTAAACAGGTCCACGATATCAAATGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004649 GO:0006282 GO:0006950 GO:0006952 GO:0006970 GO:0006974 GO:0006979 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009987 GO:0010035 GO:0010118 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0033554 GO:0042221 GO:0043207 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051171 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0090332 GO:0098542 GO:1901700 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARG_cat

Protein Analysis

211

Amino Acids

23.56

Weight (kDa)

9.95

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	100 - 195	1.1e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31865 AT2G31865 AT2G31865 AT2G31870 AT2G31870
fragaria_vesca	FvH4_1g00120 FvH4_1g00120 FvH4_1g00120 FvH4_1g00120 FvH4_1g00120 FvH4_1g00120 FvH4_6g52520 FvH4_6g52520 FvH4_6g52520 FvH4_6g52520
malus_domestica	MD15G1142600.v1.1
prunus_persica	Prupe.7G270600_v2.0.a1 Prupe.7G270600_v2.0.a1 Prupe.7G270600_v2.0.a1 Prupe.7G270600_v2.0.a1 Prupe.7G270600_v2.0.a1
pyrus_communis	pycom15g12860
rosa_chinensis	RchiOBHm_Chr2g0084431
rosa_laevigata	RLG00000015616
rosa_multiflora	Rmu_sc0009404.1_g000007 Rmu_sc0025868.1_g000002
rosa_roxburghii	Rroxscaffold_2G00156100
rosa_rugosa	Rorug01G0453500
rosa_samantha	Rh2AG001800 Rh2BG001500 Rh2CG001600 Rh2DG001900
rosa_wichuraiana	Rw2G000150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AasI	GACNNNNNNGTC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	1 cut(s)	325
AcoI	YGGCCR	2 cut(s)	60, 471
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	329, 512, 536
AfiI	CCNNNNNNNGG	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	4 cut(s)	89, 106, 354, 569
AluI	AGCT	4 cut(s)	89, 106, 354, 569
Alw21I	GWGCWC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	60, 471
AseI	ATTAAT	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	613
AsuC2I	CCSGG	1 cut(s)	442
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	2 cut(s)	62, 473
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	91, 215
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	91
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	4 cut(s)	63, 97, 571, 605
BciT130I	CCWGG	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	2 cut(s)	337, 549
BcnI	CCSGG	1 cut(s)	442
BfaI	CTAG	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	503
Bme1390I	CCNGG	2 cut(s)	424, 442
Bme18I	GGWCC	1 cut(s)	613
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	424, 442
BmsI	GCATC	3 cut(s)	61, 132, 373
BpiI	GAAGAC	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	57, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	57, 441
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	410, 561
BseNI	ACTGG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	62, 473
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	2 cut(s)	62, 473
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	91, 215, 371
Bsp143I	GATC	5 cut(s)	165, 337, 432, 549, 588
Bsp1720I	GCTNAGC	1 cut(s)	503
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	62, 473
BspCNI	CTCAG	2 cut(s)	409, 562
BspLI	GGNNCC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	57, 441
BssMI	GATC	5 cut(s)	165, 337, 432, 549, 588
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	3 cut(s)	181, 196, 241
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	396, 503, 570
BstDSI	CCRYGG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	168, 340, 435, 552, 591
BstMBI	GATC	5 cut(s)	165, 337, 432, 549, 588
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	422, 440
BstSLI	GKGCMC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	62, 473
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	2 cut(s)	84, 396
BtrI	CACGTC	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	192, 481
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	613
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	328, 511, 535
CviAII	CATG	4 cut(s)	58, 199, 547, 586
CviQI	GTAC	3 cut(s)	328, 511, 535
DdeI	CTNAG	3 cut(s)	396, 503, 570
DpnI	GATC	5 cut(s)	167, 339, 434, 551, 590
DpnII	GATC	5 cut(s)	165, 337, 432, 549, 588
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	60, 471
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	2 cut(s)	91, 215
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	91, 215
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 202, 550, 589
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	4 cut(s)	57, 198, 546, 585
FbaI	TGATCA	2 cut(s)	337, 549
FriOI	GRGCYC	2 cut(s)	91, 215
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	62, 473
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	61, 202, 550, 589
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	535, 616
Hpy188I	TCNGA	2 cut(s)	97, 342
Hpy188III	TCNNGA	6 cut(s)	84, 163, 208, 307, 398, 553
Hpy8I	GTNNAC	2 cut(s)	535, 616
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	3 cut(s)	181, 196, 241
HpyCH4IV	ACGT	2 cut(s)	260, 509
HpyCH4V	TGCA	3 cut(s)	74, 582, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	396, 503, 570
HpySE526I	ACGT	2 cut(s)	260, 509
Hsp92II	CATG	4 cut(s)	61, 202, 550, 589
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	337, 549
Kzo9I	GATC	5 cut(s)	165, 337, 432, 549, 588
LpnPI	CCDG	9 cut(s)	76, 176, 383, 409, 436, 454, 474, 487, 596
LweI	GCATC	3 cut(s)	61, 132, 373
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	260, 509
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	5 cut(s)	167, 339, 434, 551, 590
MboI	GATC	5 cut(s)	165, 337, 432, 549, 588
MboII	GAAGA	6 cut(s)	22, 72, 439, 529, 568, 571
MhlI	GDGCHC	3 cut(s)	91, 215, 371
MlsI	TGGCCA	2 cut(s)	62, 473
MluCI	AATT	4 cut(s)	316, 460, 595, 631
MluNI	TGGCCA	2 cut(s)	62, 473
MnlI	CCTC	6 cut(s)	13, 238, 276, 280, 355, 405
Mox20I	TGGCCA	2 cut(s)	62, 473
MscI	TGGCCA	2 cut(s)	62, 473
MseI	TTAA	2 cut(s)	459, 594
MslI	CAYNNNNRTG	2 cut(s)	96, 197
Msp20I	TGGCCA	2 cut(s)	62, 473
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	424, 442
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	5 cut(s)	165, 337, 432, 549, 588
NlaIII	CATG	4 cut(s)	61, 202, 550, 589
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
Ple19I	CGATCG	1 cut(s)	435
Ppu21I	YACGTR	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	3 cut(s)	329, 512, 536
RsaNI	GTAC	3 cut(s)	328, 511, 535
RseI	CAYNNNNRTG	2 cut(s)	96, 197
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	459, 594
Sau3AI	GATC	5 cut(s)	165, 337, 432, 549, 588
Sau96I	GGNCC	1 cut(s)	613
ScrFI	CCNGG	2 cut(s)	424, 442
SduI	GDGCHC	3 cut(s)	91, 215, 371
SfaNI	GCATC	3 cut(s)	61, 132, 373
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	2 cut(s)	96, 197
Sse9I	AATT	4 cut(s)	316, 460, 595, 631
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	422, 440
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	181, 196, 241
TaiI	ACGT	2 cut(s)	263, 512
TaqI	TCGA	3 cut(s)	83, 464, 515
TasI	AATT	4 cut(s)	316, 460, 595, 631
TatI	WGTACW	1 cut(s)	534
Tru1I	TTAA	2 cut(s)	459, 594
Tru9I	TTAA	2 cut(s)	459, 594
TscAI	CASTG	2 cut(s)	199, 481
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	277, 557, 590
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	199, 481
VpaK11BI	GGWCC	1 cut(s)	613
VspI	ATTAAT	1 cut(s)	459
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.