Proteinaceous RNase P 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32230 AT2G32230 |
| fragaria_vesca | FvH4_4g29971 |
| malus_domestica | MD13G1062300.v1.1 MD16G1060600.v1.1 |
| prunus_persica | Prupe.1G287700_v2.0.a1 |
| pyrus_communis | pycom16g05280 |
| rosa_chinensis | RchiOBHm_Chr4g0438251 |
| rosa_laevigata | RLG00000006377 |
| rosa_multiflora | Rmu_sc0011129.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00379340 |
| rosa_rugosa | Rorug04G0308300 |
| rosa_samantha | Rh4AG359400 Rh4BG370200 Rh4DG365300 |
| rosa_wichuraiana | Rw0G006400 Rw0G016340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| AatII | GACGTC | 1 cut(s) | 163 |
| Acc16I | TGCGCA | 2 cut(s) | 705, 1696 |
| Acc36I | ACCTGC | 1 cut(s) | 655 |
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AciI | CCGC | 2 cut(s) | 935, 1445 |
| AclWI | GGATC | 4 cut(s) | 630, 1300, 1562, 1698 |
| AcuI | CTGAAG | 4 cut(s) | 309, 753, 900, 1647 |
| AcyI | GRCGYC | 1 cut(s) | 160 |
| AfaI | GTAC | 3 cut(s) | 196, 398, 1647 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 580 |
| AgsI | TTSAA | 4 cut(s) | 278, 623, 716, 760 |
| AjnI | CCWGG | 3 cut(s) | 463, 1408, 1637 |
| Alw21I | GWGCWC | 2 cut(s) | 323, 1393 |
| Alw26I | GTCTC | 5 cut(s) | 288, 459, 823, 1073, 1482 |
| AlwI | GGATC | 4 cut(s) | 630, 1300, 1562, 1698 |
| Ama87I | CYCGRG | 1 cut(s) | 36 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 348 |
| AspLEI | GCGC | 3 cut(s) | 706, 1227, 1697 |
| AspS9I | GGNCC | 3 cut(s) | 644, 1175, 1334 |
| AsuC2I | CCSGG | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 4 cut(s) | 344, 607, 686, 838 |
| AvaI | CYCGRG | 1 cut(s) | 36 |
| AvaII | GGWCC | 3 cut(s) | 644, 1175, 1334 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| Bbv12I | GWGCWC | 2 cut(s) | 323, 1393 |
| BbvCI | CCTCAGC | 1 cut(s) | 435 |
| BbvI | GCAGC | 9 cut(s) | 196, 199, 239, 397, 452, 736, 820, 1081, 1429 |
| BccI | CCATC | 8 cut(s) | 85, 102, 966, 1006, 1190, 1500, 1568, 1625 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 432, 466, 1301, 1335, 1532, 1566 |
| BciT130I | CCWGG | 3 cut(s) | 465, 1410, 1639 |
| BciVI | GTATCC | 1 cut(s) | 766 |
| BcnI | CCSGG | 1 cut(s) | 575 |
| BcoDI | GTCTC | 5 cut(s) | 288, 459, 823, 1073, 1482 |
| BfaI | CTAG | 5 cut(s) | 99, 311, 549, 1367, 1566 |
| BfmI | CTRYAG | 1 cut(s) | 664 |
| BfuAI | ACCTGC | 1 cut(s) | 655 |
| BfuI | GTATCC | 1 cut(s) | 766 |
| BlpI | GCTNAGC | 1 cut(s) | 389 |
| Bme1390I | CCNGG | 4 cut(s) | 465, 575, 1410, 1639 |
| Bme18I | GGWCC | 3 cut(s) | 644, 1175, 1334 |
| BmeT110I | CYCGRG | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 3 cut(s) | 644, 1175, 1334 |
| BmiI | GGNNCC | 3 cut(s) | 148, 1201, 1636 |
| BmrFI | CCNGG | 4 cut(s) | 465, 575, 1410, 1639 |
| BmsI | GCATC | 8 cut(s) | 54, 667, 691, 922, 1106, 1174, 1256, 1552 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1479, 1511 |
| BpmI | CTGGAG | 1 cut(s) | 918 |
| Bpu10I | CCTNAGC | 2 cut(s) | 435, 741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 389 |
| BpuMI | CCSGG | 1 cut(s) | 575 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1068 |
| BsaHI | GRCGYC | 1 cut(s) | 160 |
| BsaI | GGTCTC | 1 cut(s) | 1482 |
| BsaJI | CCNNGG | 3 cut(s) | 464, 626, 1526 |
| BsaWI | WCCGGW | 1 cut(s) | 1072 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 580 |
| Bse1I | ACTGG | 4 cut(s) | 394, 901, 988, 1501 |
| Bse3DI | GCAATG | 5 cut(s) | 66, 197, 293, 382, 1691 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1068 |
| BseBI | CCWGG | 3 cut(s) | 465, 1410, 1639 |
| BseDI | CCNNGG | 3 cut(s) | 464, 626, 1526 |
| BseGI | GGATG | 6 cut(s) | 94, 574, 919, 937, 977, 1021 |
| BseJI | GATNNNNATC | 1 cut(s) | 1068 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 580 |
| BseMI | GCAATG | 5 cut(s) | 66, 197, 293, 382, 1691 |
| BseMII | CTCAG | 2 cut(s) | 426, 732 |
| BseNI | ACTGG | 4 cut(s) | 394, 901, 988, 1501 |
| BseRI | GAGGAG | 1 cut(s) | 878 |
| BseXI | GCAGC | 9 cut(s) | 196, 199, 239, 397, 452, 736, 820, 1081, 1429 |
| BseYI | CCCAGC | 1 cut(s) | 976 |
| BsgI | GTGCAG | 2 cut(s) | 404, 1295 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BsiHKAI | GWGCWC | 2 cut(s) | 323, 1393 |
| BsiHKCI | CYCGRG | 1 cut(s) | 36 |
| BsiSI | CCGG | 2 cut(s) | 575, 1073 |
| BslFI | GGGAC | 3 cut(s) | 59, 713, 994 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 580 |
| BsmAI | GTCTC | 5 cut(s) | 288, 459, 823, 1073, 1482 |
| BsmBI | CGTCTC | 1 cut(s) | 459 |
| BsmFI | GGGAC | 3 cut(s) | 59, 713, 994 |
| Bso31I | GGTCTC | 1 cut(s) | 1482 |
| BsoBI | CYCGRG | 1 cut(s) | 36 |
| Bsp1286I | GDGCHC | 2 cut(s) | 323, 1393 |
| Bsp1407I | TGTACA | 1 cut(s) | 194 |
| Bsp143I | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 389 |
| BspACI | CCGC | 2 cut(s) | 935, 1445 |
| BspCNI | CTCAG | 2 cut(s) | 427, 733 |
| BspLI | GGNNCC | 3 cut(s) | 148, 1201, 1636 |
| BspMI | ACCTGC | 1 cut(s) | 655 |
| BspPI | GGATC | 4 cut(s) | 630, 1300, 1562, 1698 |
| BspQI | GCTCTTC | 1 cut(s) | 354 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BspTNI | GGTCTC | 1 cut(s) | 1482 |
| BsrDI | GCAATG | 5 cut(s) | 66, 197, 293, 382, 1691 |
| BsrGI | TGTACA | 1 cut(s) | 194 |
| BsrI | ACTGG | 4 cut(s) | 394, 901, 988, 1501 |
| BssECI | CCNNGG | 3 cut(s) | 464, 626, 1526 |
| BssMI | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| BssNI | GRCGYC | 1 cut(s) | 160 |
| BssT1I | CCWWGG | 2 cut(s) | 626, 1526 |
| Bst2UI | CCWGG | 3 cut(s) | 465, 1410, 1639 |
| Bst4CI | ACNGT | 4 cut(s) | 282, 545, 1179, 1258 |
| Bst6I | CTCTTC | 2 cut(s) | 354, 1502 |
| BstACI | GRCGYC | 1 cut(s) | 160 |
| BstAUI | TGTACA | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 2 cut(s) | 383, 747 |
| BstDEI | CTNAG | 6 cut(s) | 324, 389, 435, 470, 741, 1213 |
| BstEII | GGTNACC | 1 cut(s) | 1293 |
| BstF5I | GGATG | 6 cut(s) | 94, 574, 919, 937, 977, 1021 |
| BstHHI | GCGC | 3 cut(s) | 706, 1227, 1697 |
| BstKTI | GATC | 5 cut(s) | 638, 1308, 1557, 1669, 1706 |
| BstMAI | GTCTC | 5 cut(s) | 288, 459, 823, 1073, 1482 |
| BstMBI | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 440, 554, 686, 1233, 1397 |
| BstNI | CCWGG | 3 cut(s) | 465, 1410, 1639 |
| BstNSI | RCATGY | 2 cut(s) | 1119, 1646 |
| BstPI | GGTNACC | 1 cut(s) | 1293 |
| BstSCI | CCNGG | 4 cut(s) | 463, 573, 1408, 1637 |
| BstSFI | CTRYAG | 1 cut(s) | 664 |
| BstV1I | GCAGC | 9 cut(s) | 196, 199, 239, 397, 452, 736, 820, 1081, 1429 |
| BstX2I | RGATCY | 3 cut(s) | 635, 1554, 1703 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1508 |
| BstYI | RGATCY | 3 cut(s) | 635, 1554, 1703 |
| BsuI | GTATCC | 1 cut(s) | 766 |
| BtsCI | GGATG | 6 cut(s) | 94, 574, 919, 937, 977, 1021 |
| BtsIMutI | CAGTG | 1 cut(s) | 1254 |
| BveI | ACCTGC | 1 cut(s) | 655 |
| Cac8I | GCNNGC | 2 cut(s) | 383, 747 |
| CfoI | GCGC | 3 cut(s) | 706, 1227, 1697 |
| Cfr13I | GGNCC | 3 cut(s) | 644, 1175, 1334 |
| CseI | GACGC | 1 cut(s) | 381 |
| Csp6I | GTAC | 3 cut(s) | 195, 397, 1646 |
| CviAII | CATG | 5 cut(s) | 962, 1116, 1172, 1207, 1643 |
| CviQI | GTAC | 3 cut(s) | 195, 397, 1646 |
| DdeI | CTNAG | 6 cut(s) | 324, 389, 435, 470, 741, 1213 |
| DpnI | GATC | 5 cut(s) | 637, 1307, 1556, 1668, 1705 |
| DpnII | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| DraI | TTTAAA | 1 cut(s) | 874 |
| Eam1104I | CTCTTC | 2 cut(s) | 354, 1502 |
| EarI | CTCTTC | 2 cut(s) | 354, 1502 |
| Eco130I | CCWWGG | 2 cut(s) | 626, 1526 |
| Eco31I | GGTCTC | 1 cut(s) | 1482 |
| Eco32I | GATATC | 1 cut(s) | 1066 |
| Eco47I | GGWCC | 3 cut(s) | 644, 1175, 1334 |
| Eco57I | CTGAAG | 4 cut(s) | 309, 753, 900, 1647 |
| Eco88I | CYCGRG | 1 cut(s) | 36 |
| Eco91I | GGTNACC | 1 cut(s) | 1293 |
| EcoO65I | GGTNACC | 1 cut(s) | 1293 |
| EcoRII | CCWGG | 3 cut(s) | 463, 1408, 1637 |
| EcoRV | GATATC | 1 cut(s) | 1066 |
| EcoT14I | CCWWGG | 2 cut(s) | 626, 1526 |
| ErhI | CCWWGG | 2 cut(s) | 626, 1526 |
| Esp3I | CGTCTC | 1 cut(s) | 459 |
| FaeI | CATG | 5 cut(s) | 965, 1119, 1175, 1210, 1646 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1035, 1067 |
| FaqI | GGGAC | 3 cut(s) | 59, 713, 994 |
| FatI | CATG | 5 cut(s) | 961, 1115, 1171, 1206, 1642 |
| FauNDI | CATATG | 1 cut(s) | 708 |
| FokI | GGATG | 6 cut(s) | 81, 581, 926, 944, 984, 1028 |
| FspAI | RTGCGCAY | 1 cut(s) | 705 |
| FspBI | CTAG | 5 cut(s) | 99, 311, 549, 1367, 1566 |
| FspI | TGCGCA | 2 cut(s) | 705, 1696 |
| GlaI | GCGC | 3 cut(s) | 705, 1226, 1696 |
| GsaI | CCCAGC | 1 cut(s) | 980 |
| GsuI | CTGGAG | 1 cut(s) | 918 |
| HapII | CCGG | 2 cut(s) | 575, 1073 |
| HgaI | GACGC | 1 cut(s) | 381 |
| HhaI | GCGC | 3 cut(s) | 706, 1227, 1697 |
| Hin1I | GRCGYC | 1 cut(s) | 160 |
| Hin1II | CATG | 5 cut(s) | 965, 1119, 1175, 1210, 1646 |
| Hin6I | GCGC | 3 cut(s) | 704, 1225, 1695 |
| HinP1I | GCGC | 3 cut(s) | 704, 1225, 1695 |
| HincII | GTYRAC | 2 cut(s) | 1104, 1219 |
| HindII | GTYRAC | 2 cut(s) | 1104, 1219 |
| HindIII | AAGCTT | 2 cut(s) | 687, 1049 |
| HinfI | GANTC | 6 cut(s) | 449, 552, 716, 1318, 1578, 1622 |
| HpaII | CCGG | 2 cut(s) | 575, 1073 |
| HphI | GGTGA | 4 cut(s) | 344, 607, 686, 838 |
| Hpy166II | GTNNAC | 2 cut(s) | 1104, 1219 |
| Hpy188I | TCNGA | 5 cut(s) | 241, 721, 880, 1554, 1627 |
| Hpy188III | TCNNGA | 3 cut(s) | 36, 287, 1154 |
| Hpy8I | GTNNAC | 2 cut(s) | 1104, 1219 |
| Hpy99I | CGWCG | 1 cut(s) | 1288 |
| HpyAV | CCTTC | 2 cut(s) | 36, 246 |
| HpyCH4III | ACNGT | 4 cut(s) | 282, 545, 1179, 1258 |
| HpyCH4IV | ACGT | 2 cut(s) | 160, 803 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 440, 554, 686, 1233, 1397 |
| HpyF3I | CTNAG | 6 cut(s) | 324, 389, 435, 470, 741, 1213 |
| HpySE526I | ACGT | 2 cut(s) | 160, 803 |
| Hsp92I | GRCGYC | 1 cut(s) | 160 |
| Hsp92II | CATG | 5 cut(s) | 965, 1119, 1175, 1210, 1646 |
| HspAI | GCGC | 3 cut(s) | 704, 1225, 1695 |
| Kzo9I | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| LguI | GCTCTTC | 1 cut(s) | 354 |
| LmnI | GCTCC | 1 cut(s) | 1199 |
| Lsp1109I | GCAGC | 9 cut(s) | 196, 199, 239, 397, 452, 736, 820, 1081, 1429 |
| LweI | GCATC | 8 cut(s) | 54, 667, 691, 922, 1106, 1174, 1256, 1552 |
| MaeI | CTAG | 5 cut(s) | 99, 311, 549, 1367, 1566 |
| MaeII | ACGT | 2 cut(s) | 160, 803 |
| MaeIII | GTNAC | 4 cut(s) | 1293, 1468, 1503, 1561 |
| MalI | GATC | 5 cut(s) | 637, 1307, 1556, 1668, 1705 |
| MboI | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| MflI | RGATCY | 3 cut(s) | 635, 1554, 1703 |
| MhlI | GDGCHC | 2 cut(s) | 323, 1393 |
| MluCI | AATT | 1 cut(s) | 1138 |
| MlyI | GAGTC | 5 cut(s) | 458, 546, 1327, 1572, 1631 |
| MnlI | CCTC | 9 cut(s) | 213, 246, 358, 430, 715, 856, 1325, 1416, 1608 |
| MroXI | GAANNNNTTC | 1 cut(s) | 348 |
| MseI | TTAA | 6 cut(s) | 11, 492, 873, 1143, 1248, 1587 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| MspI | CCGG | 2 cut(s) | 575, 1073 |
| MspR9I | CCNGG | 4 cut(s) | 465, 575, 1410, 1639 |
| MvaI | CCWGG | 3 cut(s) | 465, 1410, 1639 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 440, 554, 686, 1233, 1397 |
| NciI | CCSGG | 1 cut(s) | 575 |
| NdeI | CATATG | 1 cut(s) | 708 |
| NdeII | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| NlaIII | CATG | 5 cut(s) | 965, 1119, 1175, 1210, 1646 |
| NlaIV | GGNNCC | 3 cut(s) | 148, 1201, 1636 |
| NmuCI | GTSAC | 1 cut(s) | 1561 |
| NsbI | TGCGCA | 2 cut(s) | 705, 1696 |
| NspI | RCATGY | 2 cut(s) | 1119, 1646 |
| PaeR7I | CTCGAG | 1 cut(s) | 36 |
| PciSI | GCTCTTC | 1 cut(s) | 354 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 257 |
| PdmI | GAANNNNTTC | 1 cut(s) | 348 |
| PfeI | GAWTC | 1 cut(s) | 716 |
| PflFI | GACNNNGTC | 1 cut(s) | 791 |
| PleI | GAGTC | 5 cut(s) | 457, 546, 1326, 1572, 1630 |
| PpsI | GAGTC | 5 cut(s) | 457, 546, 1326, 1572, 1630 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp6I | CCWGG | 3 cut(s) | 463, 1408, 1637 |
| PspEI | GGTNACC | 1 cut(s) | 1293 |
| PspFI | CCCAGC | 1 cut(s) | 976 |
| PspGI | CCWGG | 3 cut(s) | 463, 1408, 1637 |
| PspN4I | GGNNCC | 3 cut(s) | 148, 1201, 1636 |
| PspPI | GGNCC | 3 cut(s) | 644, 1175, 1334 |
| PsuI | RGATCY | 3 cut(s) | 635, 1554, 1703 |
| PsyI | GACNNNGTC | 1 cut(s) | 791 |
| RsaI | GTAC | 3 cut(s) | 196, 398, 1647 |
| RsaNI | GTAC | 3 cut(s) | 195, 397, 1646 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SapI | GCTCTTC | 1 cut(s) | 354 |
| SaqAI | TTAA | 6 cut(s) | 11, 492, 873, 1143, 1248, 1587 |
| Sau3AI | GATC | 5 cut(s) | 635, 1305, 1554, 1666, 1703 |
| Sau96I | GGNCC | 3 cut(s) | 644, 1175, 1334 |
| SchI | GAGTC | 5 cut(s) | 458, 546, 1327, 1572, 1631 |
| ScrFI | CCNGG | 4 cut(s) | 465, 575, 1410, 1639 |
| SduI | GDGCHC | 2 cut(s) | 323, 1393 |
| SfaNI | GCATC | 8 cut(s) | 54, 667, 691, 922, 1106, 1174, 1256, 1552 |
| SfcI | CTRYAG | 1 cut(s) | 664 |
| Sfr274I | CTCGAG | 1 cut(s) | 36 |
| SinI | GGWCC | 3 cut(s) | 644, 1175, 1334 |
| SlaI | CTCGAG | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| SmlI | CTYRAG | 1 cut(s) | 36 |
| SmoI | CTYRAG | 1 cut(s) | 36 |
| Sse9I | AATT | 1 cut(s) | 1138 |
| SsiI | CCGC | 2 cut(s) | 935, 1445 |
| SspMI | CTAG | 5 cut(s) | 99, 311, 549, 1367, 1566 |
| StyD4I | CCNGG | 4 cut(s) | 463, 573, 1408, 1637 |
| StyI | CCWWGG | 2 cut(s) | 626, 1526 |
| TaaI | ACNGT | 4 cut(s) | 282, 545, 1179, 1258 |
| TaiI | ACGT | 2 cut(s) | 163, 806 |
| TaqI | TCGA | 6 cut(s) | 37, 251, 588, 699, 845, 1286 |
| TasI | AATT | 1 cut(s) | 1138 |
| TatI | WGTACW | 1 cut(s) | 194 |
| TfiI | GAWTC | 1 cut(s) | 716 |
| Tru1I | TTAA | 6 cut(s) | 11, 492, 873, 1143, 1248, 1587 |
| Tru9I | TTAA | 6 cut(s) | 11, 492, 873, 1143, 1248, 1587 |
| TscAI | CASTG | 1 cut(s) | 1261 |
| TseFI | GTSAC | 1 cut(s) | 1561 |
| Tsp45I | GTSAC | 1 cut(s) | 1561 |
| TspDTI | ATGAA | 4 cut(s) | 74, 540, 620, 708 |
| TspRI | CASTG | 1 cut(s) | 1261 |
| Tth111I | GACNNNGTC | 1 cut(s) | 791 |
| VpaK11BI | GGWCC | 3 cut(s) | 644, 1175, 1334 |
| XceI | RCATGY | 2 cut(s) | 1119, 1646 |
| XhoI | CTCGAG | 1 cut(s) | 36 |
| XmnI | GAANNNNTTC | 1 cut(s) | 348 |
| XspI | CTAG | 5 cut(s) | 99, 311, 549, 1367, 1566 |
| ZraI | GACGTC | 1 cut(s) | 161 |