AT2G32230
NAC Family

Proteinaceous RNase P 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13679529 .. 13682333
2805 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32230.1

Sequence Viewer

Length: 1719 bp
ATGCTGCGTTTAACTTGTTTTACACCTTCTTTTTCTCGAGCGTGTTGTCCTTTATTTGCAATGATGCTCAAAGTCCCATCTGTTCATCTCCACCATCCTAGATTTTCTCCATTTCGTTTCTACCATACTTCCTTACTTGTGAAAGGCACCAGAGATAGACGTCTTATTCTTGTTGAGCGTAGCAGACATCTATGTACATTGCCTCTCGCTGCTGCTAAACAATCAGCAGCTTCTCCTTCTGAAAACTTATCGAGGAAAGCGAAGAAGAAAGCTATTCAACAGTCTCCTGAAGCATTGCTGAAACAAAAGCTAGATATGTGCTCTAAGAAAGGTGATGTCTTGGAAGCTCTTCGCTTGTATGATGAGGCAAGACGCAATGGCGTGCAGCTTAGCCAGTACCATTATAATGTGTTGCTTTATGTATGCTCGTTGGCTGAGGCAGCAACAGAGTCGTCTCCAAATCCAGGGCTTAGTAGGGGTTTTGATATTTTTAAGCAGATGATTGTTGATAAAGTTGTTCCCAATGAAGCTACATTTACAAACGGTGCTAGACTCGCAGTTGCAAAGGATGACCCGGAAATGGCTTTCGATATGGTGAAACAGATGAAAGCCTTTGGTATTCAACCAAGGTTGAGATCCTATGGACCTGCCCTTTTTGGTTTCTGTAGGAAAGGTGATGCAGACAAAGCTTATGAAGTCGATGCGCATATGGTTGAATCAGAGGTAGTCCCTGAAGAACCTGAGCTTGCTGCTCTTTTGAAAGTTAGTATGGATACAAAGAACGCAGACAAGGTCTATAAGACGTTGCAGCGATTGAGAGATTTGGTGAGACAGGTTTCTAAATCGACTTTTGATATGATTGAGGAGTGGTTTAAATCTGAAGTAGCTACAAAAACTGGAGTGAAGAAATGGGATGTGAAGAAAATAAGGGATGCGGTTGTGAGTGGTGGTGGTGGGTGGCATGGACAAGGATGGCTGGGGACTGGCAAATGGAATGTGAAAAGAACAGAGATGGATGAGAATGGTGTATGTAAATGTTGCAAAGAGAAGCTTGTTTGTATTGATATCAATCCGGTTGAGACAGAAACCTTTGCTGCATCGTTGACCCGATTGGCATGTGAAAGAGAAGTCAAGGCTAATTTTAATCAGTTTCAGGAATGGCTGGAAAGACATGGACCGTTTGATGCAGTCATTGATGGAGCCAACATGGGCTTAGTCAACCAGCGCAGTTTCAGCTTCTTCCAGCTTAACAACACTGTCCAAAGATGCCAACAAATAAGCCCGTCGAAAAGGTTACCACTTGTGATCCTGCACAAGAGTCGTGTAAATGGAGGTCCAGCTACATACCCTAAAAACAGAGCCTTGCTAGAGAAATGGAAAAACGCTGGTGCTCTCTATGCTACCCCTCCTGGCTCAAACGATGATTGGTATTGGCTTTACGCTGCGGTAAGTTGCAAATGTTTGTTAGTAACAAACGATGAGATGAGAGACCATCTCTTCCAGTTACTTGGAAATAGTTTCTTCCCAAGGTGGAAAGAGAAGCATCAGGTTCGGATCTCTGTCACTAGAGAAGATGGACTCAAACTTAATATGCCACCTCCATACTCCATTGTTATACAGGAGTCTGAAGATGGAACCTGGCATGTACCAATGAGCGTAGAAGATGATCTCCAAACATCAAGGCAATGGTTATGCGCAAAAAGATCCAAAACACCTTGA

Protein Analysis

572

Amino Acids

64.88

Weight (kDa)

9.2

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 88 - 297 1.6e-78 Pentacotripeptide-repeat region of PRORP
PRORP PF16953 338 - 565 1.8e-81 Protein-only RNase P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32230 AT2G32230
fragaria_vesca FvH4_4g29971
malus_domestica MD13G1062300.v1.1 MD16G1060600.v1.1
prunus_persica Prupe.1G287700_v2.0.a1
pyrus_communis pycom16g05280
rosa_chinensis RchiOBHm_Chr4g0438251
rosa_laevigata RLG00000006377
rosa_multiflora Rmu_sc0011129.1_g000009
rosa_roxburghii Rroxscaffold_5G00379340
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359400 Rh4BG370200 Rh4DG365300
rosa_wichuraiana Rw0G006400 Rw0G016340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AatII GACGTC 1 cut(s) 163
Acc16I TGCGCA 2 cut(s) 705, 1696
Acc36I ACCTGC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 2 cut(s) 935, 1445
AclWI GGATC 4 cut(s) 630, 1300, 1562, 1698
AcuI CTGAAG 4 cut(s) 309, 753, 900, 1647
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 3 cut(s) 196, 398, 1647
AfiI CCNNNNNNNGG 2 cut(s) 464, 580
AgsI TTSAA 4 cut(s) 278, 623, 716, 760
AjnI CCWGG 3 cut(s) 463, 1408, 1637
Alw21I GWGCWC 2 cut(s) 323, 1393
Alw26I GTCTC 5 cut(s) 288, 459, 823, 1073, 1482
AlwI GGATC 4 cut(s) 630, 1300, 1562, 1698
Ama87I CYCGRG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 3 cut(s) 706, 1227, 1697
AspS9I GGNCC 3 cut(s) 644, 1175, 1334
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 344, 607, 686, 838
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 3 cut(s) 644, 1175, 1334
BanI GGYRCC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 323, 1393
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 9 cut(s) 196, 199, 239, 397, 452, 736, 820, 1081, 1429
BccI CCATC 8 cut(s) 85, 102, 966, 1006, 1190, 1500, 1568, 1625
BcgI CGANNNNNNTGC 6 cut(s) 432, 466, 1301, 1335, 1532, 1566
BciT130I CCWGG 3 cut(s) 465, 1410, 1639
BciVI GTATCC 1 cut(s) 766
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 5 cut(s) 288, 459, 823, 1073, 1482
BfaI CTAG 5 cut(s) 99, 311, 549, 1367, 1566
BfmI CTRYAG 1 cut(s) 664
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 1 cut(s) 766
BlpI GCTNAGC 1 cut(s) 389
Bme1390I CCNGG 4 cut(s) 465, 575, 1410, 1639
Bme18I GGWCC 3 cut(s) 644, 1175, 1334
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 3 cut(s) 644, 1175, 1334
BmiI GGNNCC 3 cut(s) 148, 1201, 1636
BmrFI CCNGG 4 cut(s) 465, 575, 1410, 1639
BmsI GCATC 8 cut(s) 54, 667, 691, 922, 1106, 1174, 1256, 1552
BplI GAGNNNNNCTC 2 cut(s) 1479, 1511
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 2 cut(s) 435, 741
Bpu1102I GCTNAGC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 1482
BsaJI CCNNGG 3 cut(s) 464, 626, 1526
BsaWI WCCGGW 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 580
Bse1I ACTGG 4 cut(s) 394, 901, 988, 1501
Bse3DI GCAATG 5 cut(s) 66, 197, 293, 382, 1691
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 465, 1410, 1639
BseDI CCNNGG 3 cut(s) 464, 626, 1526
BseGI GGATG 6 cut(s) 94, 574, 919, 937, 977, 1021
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 2 cut(s) 464, 580
BseMI GCAATG 5 cut(s) 66, 197, 293, 382, 1691
BseMII CTCAG 2 cut(s) 426, 732
BseNI ACTGG 4 cut(s) 394, 901, 988, 1501
BseRI GAGGAG 1 cut(s) 878
BseXI GCAGC 9 cut(s) 196, 199, 239, 397, 452, 736, 820, 1081, 1429
BseYI CCCAGC 1 cut(s) 976
BsgI GTGCAG 2 cut(s) 404, 1295
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 323, 1393
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 575, 1073
BslFI GGGAC 3 cut(s) 59, 713, 994
BslI CCNNNNNNNGG 2 cut(s) 464, 580
BsmAI GTCTC 5 cut(s) 288, 459, 823, 1073, 1482
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 3 cut(s) 59, 713, 994
Bso31I GGTCTC 1 cut(s) 1482
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 323, 1393
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
Bsp1720I GCTNAGC 1 cut(s) 389
BspACI CCGC 2 cut(s) 935, 1445
BspCNI CTCAG 2 cut(s) 427, 733
BspLI GGNNCC 3 cut(s) 148, 1201, 1636
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 4 cut(s) 630, 1300, 1562, 1698
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 1482
BsrDI GCAATG 5 cut(s) 66, 197, 293, 382, 1691
BsrGI TGTACA 1 cut(s) 194
BsrI ACTGG 4 cut(s) 394, 901, 988, 1501
BssECI CCNNGG 3 cut(s) 464, 626, 1526
BssMI GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 626, 1526
Bst2UI CCWGG 3 cut(s) 465, 1410, 1639
Bst4CI ACNGT 4 cut(s) 282, 545, 1179, 1258
Bst6I CTCTTC 2 cut(s) 354, 1502
BstACI GRCGYC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 383, 747
BstDEI CTNAG 6 cut(s) 324, 389, 435, 470, 741, 1213
BstEII GGTNACC 1 cut(s) 1293
BstF5I GGATG 6 cut(s) 94, 574, 919, 937, 977, 1021
BstHHI GCGC 3 cut(s) 706, 1227, 1697
BstKTI GATC 5 cut(s) 638, 1308, 1557, 1669, 1706
BstMAI GTCTC 5 cut(s) 288, 459, 823, 1073, 1482
BstMBI GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
BstMWI GCNNNNNNNGC 5 cut(s) 440, 554, 686, 1233, 1397
BstNI CCWGG 3 cut(s) 465, 1410, 1639
BstNSI RCATGY 2 cut(s) 1119, 1646
BstPI GGTNACC 1 cut(s) 1293
BstSCI CCNGG 4 cut(s) 463, 573, 1408, 1637
BstSFI CTRYAG 1 cut(s) 664
BstV1I GCAGC 9 cut(s) 196, 199, 239, 397, 452, 736, 820, 1081, 1429
BstX2I RGATCY 3 cut(s) 635, 1554, 1703
BstXI CCANNNNNNTGG 1 cut(s) 1508
BstYI RGATCY 3 cut(s) 635, 1554, 1703
BsuI GTATCC 1 cut(s) 766
BtsCI GGATG 6 cut(s) 94, 574, 919, 937, 977, 1021
BtsIMutI CAGTG 1 cut(s) 1254
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 2 cut(s) 383, 747
CfoI GCGC 3 cut(s) 706, 1227, 1697
Cfr13I GGNCC 3 cut(s) 644, 1175, 1334
CseI GACGC 1 cut(s) 381
Csp6I GTAC 3 cut(s) 195, 397, 1646
CviAII CATG 5 cut(s) 962, 1116, 1172, 1207, 1643
CviQI GTAC 3 cut(s) 195, 397, 1646
DdeI CTNAG 6 cut(s) 324, 389, 435, 470, 741, 1213
DpnI GATC 5 cut(s) 637, 1307, 1556, 1668, 1705
DpnII GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
DraI TTTAAA 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 354, 1502
EarI CTCTTC 2 cut(s) 354, 1502
Eco130I CCWWGG 2 cut(s) 626, 1526
Eco31I GGTCTC 1 cut(s) 1482
Eco32I GATATC 1 cut(s) 1066
Eco47I GGWCC 3 cut(s) 644, 1175, 1334
Eco57I CTGAAG 4 cut(s) 309, 753, 900, 1647
Eco88I CYCGRG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 1293
EcoO65I GGTNACC 1 cut(s) 1293
EcoRII CCWGG 3 cut(s) 463, 1408, 1637
EcoRV GATATC 1 cut(s) 1066
EcoT14I CCWWGG 2 cut(s) 626, 1526
ErhI CCWWGG 2 cut(s) 626, 1526
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 5 cut(s) 965, 1119, 1175, 1210, 1646
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 3 cut(s) 59, 713, 994
FatI CATG 5 cut(s) 961, 1115, 1171, 1206, 1642
FauNDI CATATG 1 cut(s) 708
FokI GGATG 6 cut(s) 81, 581, 926, 944, 984, 1028
FspAI RTGCGCAY 1 cut(s) 705
FspBI CTAG 5 cut(s) 99, 311, 549, 1367, 1566
FspI TGCGCA 2 cut(s) 705, 1696
GlaI GCGC 3 cut(s) 705, 1226, 1696
GsaI CCCAGC 1 cut(s) 980
GsuI CTGGAG 1 cut(s) 918
HapII CCGG 2 cut(s) 575, 1073
HgaI GACGC 1 cut(s) 381
HhaI GCGC 3 cut(s) 706, 1227, 1697
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 5 cut(s) 965, 1119, 1175, 1210, 1646
Hin6I GCGC 3 cut(s) 704, 1225, 1695
HinP1I GCGC 3 cut(s) 704, 1225, 1695
HincII GTYRAC 2 cut(s) 1104, 1219
HindII GTYRAC 2 cut(s) 1104, 1219
HindIII AAGCTT 2 cut(s) 687, 1049
HinfI GANTC 6 cut(s) 449, 552, 716, 1318, 1578, 1622
HpaII CCGG 2 cut(s) 575, 1073
HphI GGTGA 4 cut(s) 344, 607, 686, 838
Hpy166II GTNNAC 2 cut(s) 1104, 1219
Hpy188I TCNGA 5 cut(s) 241, 721, 880, 1554, 1627
Hpy188III TCNNGA 3 cut(s) 36, 287, 1154
Hpy8I GTNNAC 2 cut(s) 1104, 1219
Hpy99I CGWCG 1 cut(s) 1288
HpyAV CCTTC 2 cut(s) 36, 246
HpyCH4III ACNGT 4 cut(s) 282, 545, 1179, 1258
HpyCH4IV ACGT 2 cut(s) 160, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 554, 686, 1233, 1397
HpyF3I CTNAG 6 cut(s) 324, 389, 435, 470, 741, 1213
HpySE526I ACGT 2 cut(s) 160, 803
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 5 cut(s) 965, 1119, 1175, 1210, 1646
HspAI GCGC 3 cut(s) 704, 1225, 1695
Kzo9I GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 1199
Lsp1109I GCAGC 9 cut(s) 196, 199, 239, 397, 452, 736, 820, 1081, 1429
LweI GCATC 8 cut(s) 54, 667, 691, 922, 1106, 1174, 1256, 1552
MaeI CTAG 5 cut(s) 99, 311, 549, 1367, 1566
MaeII ACGT 2 cut(s) 160, 803
MaeIII GTNAC 4 cut(s) 1293, 1468, 1503, 1561
MalI GATC 5 cut(s) 637, 1307, 1556, 1668, 1705
MboI GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
MflI RGATCY 3 cut(s) 635, 1554, 1703
MhlI GDGCHC 2 cut(s) 323, 1393
MluCI AATT 1 cut(s) 1138
MlyI GAGTC 5 cut(s) 458, 546, 1327, 1572, 1631
MnlI CCTC 9 cut(s) 213, 246, 358, 430, 715, 856, 1325, 1416, 1608
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 6 cut(s) 11, 492, 873, 1143, 1248, 1587
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 2 cut(s) 575, 1073
MspR9I CCNGG 4 cut(s) 465, 575, 1410, 1639
MvaI CCWGG 3 cut(s) 465, 1410, 1639
MwoI GCNNNNNNNGC 5 cut(s) 440, 554, 686, 1233, 1397
NciI CCSGG 1 cut(s) 575
NdeI CATATG 1 cut(s) 708
NdeII GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
NlaIII CATG 5 cut(s) 965, 1119, 1175, 1210, 1646
NlaIV GGNNCC 3 cut(s) 148, 1201, 1636
NmuCI GTSAC 1 cut(s) 1561
NsbI TGCGCA 2 cut(s) 705, 1696
NspI RCATGY 2 cut(s) 1119, 1646
PaeR7I CTCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 716
PflFI GACNNNGTC 1 cut(s) 791
PleI GAGTC 5 cut(s) 457, 546, 1326, 1572, 1630
PpsI GAGTC 5 cut(s) 457, 546, 1326, 1572, 1630
PsiI TTATAA 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 463, 1408, 1637
PspEI GGTNACC 1 cut(s) 1293
PspFI CCCAGC 1 cut(s) 976
PspGI CCWGG 3 cut(s) 463, 1408, 1637
PspN4I GGNNCC 3 cut(s) 148, 1201, 1636
PspPI GGNCC 3 cut(s) 644, 1175, 1334
PsuI RGATCY 3 cut(s) 635, 1554, 1703
PsyI GACNNNGTC 1 cut(s) 791
RsaI GTAC 3 cut(s) 196, 398, 1647
RsaNI GTAC 3 cut(s) 195, 397, 1646
RseI CAYNNNNRTG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 6 cut(s) 11, 492, 873, 1143, 1248, 1587
Sau3AI GATC 5 cut(s) 635, 1305, 1554, 1666, 1703
Sau96I GGNCC 3 cut(s) 644, 1175, 1334
SchI GAGTC 5 cut(s) 458, 546, 1327, 1572, 1631
ScrFI CCNGG 4 cut(s) 465, 575, 1410, 1639
SduI GDGCHC 2 cut(s) 323, 1393
SfaNI GCATC 8 cut(s) 54, 667, 691, 922, 1106, 1174, 1256, 1552
SfcI CTRYAG 1 cut(s) 664
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 3 cut(s) 644, 1175, 1334
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 1138
SsiI CCGC 2 cut(s) 935, 1445
SspMI CTAG 5 cut(s) 99, 311, 549, 1367, 1566
StyD4I CCNGG 4 cut(s) 463, 573, 1408, 1637
StyI CCWWGG 2 cut(s) 626, 1526
TaaI ACNGT 4 cut(s) 282, 545, 1179, 1258
TaiI ACGT 2 cut(s) 163, 806
TaqI TCGA 6 cut(s) 37, 251, 588, 699, 845, 1286
TasI AATT 1 cut(s) 1138
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 6 cut(s) 11, 492, 873, 1143, 1248, 1587
Tru9I TTAA 6 cut(s) 11, 492, 873, 1143, 1248, 1587
TscAI CASTG 1 cut(s) 1261
TseFI GTSAC 1 cut(s) 1561
Tsp45I GTSAC 1 cut(s) 1561
TspDTI ATGAA 4 cut(s) 74, 540, 620, 708
TspRI CASTG 1 cut(s) 1261
Tth111I GACNNNGTC 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 644, 1175, 1334
XceI RCATGY 2 cut(s) 1119, 1646
XhoI CTCGAG 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 5 cut(s) 99, 311, 549, 1367, 1566
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.