Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014152

Physical Location & Seq

Genomic Coordinates Reverse (-)

4348175 .. 4349434

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1062300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTGCACGGCGGCGCTCTGCTGAGAACCTCGCCGCTCTTCTCCTTCTTCATCAAAATCCCACTCCCCCTAATCTCCCGAACGTCCCGCTGTTTCTTCCGCCCAATTCTCAGCTTCCCTAAATCTAAACCGACCCCAATTTCTGCCGGCACCTTCTCCATGGACAAAAGACTCAACCTTTGCACTCTGGCTCTCTCCAACGACTCGCCGTCGCCGTCGTATCCGGCGGTTTCCAACAAAGCCAAAAGGAAAGCGCGGCGGGAGTCGCCCGAGGGGGTCCTGAAGCACAAGCTAGACATGTATTCCAGGCACGGCCAGCTGATCCAAGCTCTGAGCCTTTACGACGAGGCCAGGAGCAATGGGGTGCCGCTTGGCCTGCACCATTACAATGTTCTGCTCTACCTTTGCTCCTCCAATGGCGGCGGCGATGATGGTGATGTGGGTTTGAAGAGGGGGTTTGAGATTTTTCGCCAGATGGTTGAGGATAAGGTTGTCCCCAATGAGGCCACTTTCACCAGCGCGGCGAGGCTGGCGATCGCGGCGGAGGACCCGGAAATGGCGTTTCATTTGGAGAAGCAGATGAAGGGTTTAGGGATTCCGCCGAAATTGAGGTCTTACGATCCGGCATTGTTTGAGTTCTGTAAGAAGGGAGAGGCTGATAGAGCTTATGAGGTCGATGCCCACATGGTTGAATCCGGGGTCACGGCGGAGGAGCCTGAGATTTCCGCCTGGATAAAAGCTAGTACTGATTCGAGCAGAAGTGACAAGGTTTATGAGATGTTGCACCGGTTGCGGACCATGGTGAGGCAGGTCTCGGAGTCAACTTATAGGGTGGTGGAGGAGTGGTTTAAGTCCGAGGAGGCGGCGAGAGTTGGGGTGGATAGTTGGGATGCGAATAAGGTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

303

Amino Acids

33.8

Weight (kDa)

8.76

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	82 - 289	1.2e-70	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32230 AT2G32230
fragaria_vesca	FvH4_4g29971
malus_domestica	MD13G1062300.v1.1 MD16G1060600.v1.1
prunus_persica	Prupe.1G287700_v2.0.a1
pyrus_communis	pycom16g05280
rosa_chinensis	RchiOBHm_Chr4g0438251
rosa_laevigata	RLG00000006377
rosa_multiflora	Rmu_sc0011129.1_g000009
rosa_roxburghii	Rroxscaffold_5G00379340
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359400 Rh4BG370200 Rh4DG365300
rosa_wichuraiana	Rw0G006400 Rw0G016340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	799
AccB1I	GGYRCC	2 cut(s)	149, 364
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	3 cut(s)	256, 521, 539
AclWI	GGATC	2 cut(s)	316, 614
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	3 cut(s)	502, 556, 804
AflIII	ACRYGT	1 cut(s)	297
AgeI	ACCGGT	1 cut(s)	786
AgsI	TTSAA	2 cut(s)	448, 692
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	305, 350, 728
AluBI	AGCT	6 cut(s)	114, 292, 319, 329, 665, 740
AluI	AGCT	6 cut(s)	114, 292, 319, 329, 665, 740
Alw26I	GTCTC	1 cut(s)	817
AlwI	GGATC	2 cut(s)	316, 614
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	313, 348, 373, 504
ArsI	GACNNNNNNTTYG	4 cut(s)	162, 194, 596, 628
AsiGI	ACCGGT	1 cut(s)	786
AsiSI	GCGATCGC	1 cut(s)	537
AspLEI	GCGC	3 cut(s)	17, 256, 521
AspS9I	GGNCC	3 cut(s)	277, 547, 795
AsuC2I	CCSGG	2 cut(s)	551, 697
AsuHPI	GGTGA	3 cut(s)	446, 505, 814
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	277, 547, 795
BanI	GGYRCC	2 cut(s)	149, 364
BccI	CCATC	2 cut(s)	425, 469
BceAI	ACGGC	5 cut(s)	25, 193, 199, 328, 720
BcgI	CGANNNNNNTGC	1 cut(s)	883
BciT130I	CCWGG	3 cut(s)	307, 352, 730
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	2 cut(s)	551, 697
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	2 cut(s)	293, 741
BfoI	RGCGCY	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	799
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	9 cut(s)	13, 35, 257, 368, 421, 424, 522, 540, 864
BlsI	GCNGC	9 cut(s)	14, 36, 258, 369, 422, 425, 523, 541, 865
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	5 cut(s)	307, 352, 551, 697, 730
Bme18I	GGWCC	3 cut(s)	277, 547, 795
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	277, 547, 795
BmiI	GGNNCC	5 cut(s)	151, 278, 366, 549, 714
BmrFI	CCNGG	5 cut(s)	307, 352, 551, 697, 730
BmsI	GCATC	2 cut(s)	667, 880
BpuMI	CCSGG	2 cut(s)	551, 697
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	5 cut(s)	159, 270, 696, 798, 855
BsaWI	WCCGGW	1 cut(s)	786
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 830, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 556, 804
Bse118I	RCCGGY	2 cut(s)	146, 786
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	3 cut(s)	307, 352, 730
BseDI	CCNNGG	5 cut(s)	159, 270, 696, 798, 855
BseGI	GGATG	1 cut(s)	895
BseLI	CCNNNNNNNGG	3 cut(s)	502, 556, 804
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	4 cut(s)	14, 124, 323, 708
BseRI	GAGGAG	4 cut(s)	400, 725, 854, 872
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	3 cut(s)	256, 521, 539
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	4 cut(s)	315, 350, 375, 506
BshNI	GGYRCC	2 cut(s)	149, 364
BshTI	ACCGGT	1 cut(s)	786
BsiEI	CGRYCG	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	6 cut(s)	147, 224, 551, 623, 696, 787
BslFI	GGGAC	2 cut(s)	70, 479
BslI	CCNNNNNNNGG	3 cut(s)	502, 556, 804
BsmAI	GTCTC	1 cut(s)	817
BsmFI	GGGAC	2 cut(s)	70, 479
BsnI	GGCC	4 cut(s)	315, 350, 375, 506
Bso31I	GGTCTC	1 cut(s)	817
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	321, 534, 619
Bsp19I	CCATGG	2 cut(s)	159, 798
BspANI	GGCC	4 cut(s)	315, 350, 375, 506
BspCNI	CTCAG	4 cut(s)	15, 123, 324, 709
BspFNI	CGCG	3 cut(s)	256, 521, 539
BspLI	GGNNCC	5 cut(s)	151, 278, 366, 549, 714
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	2 cut(s)	316, 614
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	149, 364
BspTNI	GGTCTC	1 cut(s)	817
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	2 cut(s)	146, 786
BssAI	RCCGGY	2 cut(s)	146, 786
BssECI	CCNNGG	5 cut(s)	159, 270, 696, 798, 855
BssMI	GATC	3 cut(s)	321, 534, 619
BssT1I	CCWWGG	2 cut(s)	159, 798
Bst2UI	CCWGG	3 cut(s)	307, 352, 730
Bst6I	CTCTTC	2 cut(s)	44, 443
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstC8I	GCNNGC	4 cut(s)	148, 317, 377, 531
BstDEI	CTNAG	4 cut(s)	23, 110, 332, 717
BstDSI	CCRYGG	2 cut(s)	159, 798
BstF5I	GGATG	1 cut(s)	895
BstFNI	CGCG	3 cut(s)	256, 521, 539
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	3 cut(s)	17, 256, 521
BstKTI	GATC	3 cut(s)	324, 537, 622
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	3 cut(s)	321, 534, 619
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	7 cut(s)	265, 316, 376, 530, 539, 662, 790
BstNI	CCWGG	3 cut(s)	307, 352, 730
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	5 cut(s)	305, 350, 549, 695, 728
BstUI	CGCG	3 cut(s)	256, 521, 539
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	315, 350, 375, 506
BtgI	CCRYGG	2 cut(s)	159, 798
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	895
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	4 cut(s)	148, 317, 377, 531
CfoI	GCGC	3 cut(s)	17, 256, 521
Cfr10I	RCCGGY	2 cut(s)	146, 786
Cfr13I	GGNCC	3 cut(s)	277, 547, 795
Csp6I	GTAC	1 cut(s)	744
CspAI	ACCGGT	1 cut(s)	786
CviAII	CATG	4 cut(s)	160, 298, 685, 799
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	4 cut(s)	23, 110, 332, 717
DpnI	GATC	3 cut(s)	323, 536, 621
DpnII	GATC	3 cut(s)	321, 534, 619
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	44, 443
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	2 cut(s)	44, 443
EciI	GGCGGA	5 cut(s)	89, 557, 588, 715, 722
Eco130I	CCWWGG	2 cut(s)	159, 798
Eco31I	GGTCTC	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	277, 547, 795
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	277, 547
EcoRII	CCWGG	3 cut(s)	305, 350, 728
EcoT14I	CCWWGG	2 cut(s)	159, 798
ErhI	CCWWGG	2 cut(s)	159, 798
FaeI	CATG	4 cut(s)	163, 301, 688, 802
FaiI	YATR	7 cut(s)	161, 299, 669, 686, 774, 800, 828
FaqI	GGGAC	2 cut(s)	70, 479
FatI	CATG	4 cut(s)	159, 297, 684, 798
FauI	CCCGC	2 cut(s)	95, 252
Fnu4HI	GCNGC	9 cut(s)	13, 35, 257, 368, 421, 424, 522, 540, 864
FokI	GGATG	1 cut(s)	902
Fsp4HI	GCNGC	9 cut(s)	13, 35, 257, 368, 421, 424, 522, 540, 864
FspBI	CTAG	2 cut(s)	293, 741
GlaI	GCGC	3 cut(s)	16, 255, 520
GluI	GCNGC	9 cut(s)	13, 35, 257, 368, 421, 424, 522, 540, 864
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	315, 350, 375, 506
HapII	CCGG	6 cut(s)	147, 224, 551, 623, 696, 787
HhaI	GCGC	3 cut(s)	17, 256, 521
Hin1II	CATG	4 cut(s)	163, 301, 688, 802
Hin6I	GCGC	3 cut(s)	15, 254, 519
HinP1I	GCGC	3 cut(s)	15, 254, 519
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	7 cut(s)	171, 203, 263, 595, 692, 749, 818
HpaII	CCGG	6 cut(s)	147, 224, 551, 623, 696, 787
HphI	GGTGA	3 cut(s)	446, 505, 814
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	3 cut(s)	333, 817, 856
Hpy188III	TCNNGA	2 cut(s)	78, 280
Hpy8I	GTNNAC	1 cut(s)	822
Hpy99I	CGWCG	3 cut(s)	214, 220, 347
HpyAV	CCTTC	4 cut(s)	55, 163, 577, 640
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	7, 183, 379, 784
HpyF10VI	GCNNNNNNNGC	7 cut(s)	265, 316, 376, 530, 539, 662, 790
HpyF3I	CTNAG	4 cut(s)	23, 110, 332, 717
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	163, 301, 688, 802
HspAI	GCGC	3 cut(s)	15, 254, 519
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	321, 534, 619
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	3 cut(s)	354, 413, 712
LweI	GCATC	2 cut(s)	667, 880
MaeI	CTAG	2 cut(s)	293, 741
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	700, 761
MalI	GATC	3 cut(s)	323, 536, 621
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	321, 534, 619
MboII	GAAGA	4 cut(s)	31, 40, 88, 460
MluCI	AATT	3 cut(s)	105, 138, 605
MlyI	GAGTC	4 cut(s)	165, 197, 272, 827
MmeI	TCCRAC	2 cut(s)	222, 258
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	90, 319
MspI	CCGG	6 cut(s)	147, 224, 551, 623, 696, 787
MspR9I	CCNGG	5 cut(s)	307, 352, 551, 697, 730
MvaI	CCWGG	3 cut(s)	307, 352, 730
MvnI	CGCG	3 cut(s)	256, 521, 539
MwoI	GCNNNNNNNGC	7 cut(s)	265, 316, 376, 530, 539, 662, 790
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	551, 697
NcoI	CCATGG	2 cut(s)	159, 798
NdeII	GATC	3 cut(s)	321, 534, 619
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	4 cut(s)	163, 301, 688, 802
NlaIV	GGNNCC	5 cut(s)	151, 278, 366, 549, 714
NmuCI	GTSAC	2 cut(s)	700, 761
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	595, 692, 749
PinAI	ACCGGT	1 cut(s)	786
PkrI	GCNGC	9 cut(s)	14, 36, 258, 369, 422, 425, 523, 541, 865
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	4 cut(s)	165, 197, 271, 826
PpsI	GAGTC	4 cut(s)	165, 197, 271, 826
PpuMI	RGGWCCY	2 cut(s)	277, 547
PscI	ACATGT	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	277, 547
Psp6I	CCWGG	3 cut(s)	305, 350, 728
PspGI	CCWGG	3 cut(s)	305, 350, 728
PspN4I	GGNNCC	5 cut(s)	151, 278, 366, 549, 714
PspPI	GGNCC	3 cut(s)	277, 547, 795
PspPPI	RGGWCCY	2 cut(s)	277, 547
PvuI	CGATCG	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	319
RgaI	GCGATCGC	1 cut(s)	537
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	9 cut(s)	13, 35, 257, 368, 421, 424, 522, 540, 864
Sau3AI	GATC	3 cut(s)	321, 534, 619
Sau96I	GGNCC	3 cut(s)	277, 547, 795
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	4 cut(s)	165, 197, 272, 827
ScrFI	CCNGG	5 cut(s)	307, 352, 551, 697, 730
SfaAI	GCGATCGC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	667, 880
SgfI	GCGATCGC	1 cut(s)	537
SinI	GGWCC	3 cut(s)	277, 547, 795
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	3 cut(s)	105, 138, 605
SspMI	CTAG	2 cut(s)	293, 741
StyD4I	CCNGG	5 cut(s)	305, 350, 549, 695, 728
StyI	CCWWGG	2 cut(s)	159, 798
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	675, 752
TasI	AATT	3 cut(s)	105, 138, 605
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	9 cut(s)	15, 37, 259, 370, 423, 426, 524, 542, 866
TfiI	GAWTC	3 cut(s)	595, 692, 749
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TseFI	GTSAC	2 cut(s)	700, 761
Tsp45I	GTSAC	2 cut(s)	700, 761
TspDTI	ATGAA	3 cut(s)	40, 554, 596
VpaK11BI	GGWCC	3 cut(s)	277, 547, 795
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	2 cut(s)	293, 741
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.