Rorug04G0308300
NAC Family

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009428
Physical Location & Seq
Forward (+)
48361058 .. 48364930
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0308300.1

Sequence Viewer

Length: 1197 bp
ATGGCAATGACAAAGGAGGTGAGGCTAACGGAGATACAAGGCAGAGGAAGGTCATTAGTGGCGGCTGAGCCACTCAAAGGCGGCCAAATCGTTCTCCGCGACTCTCCTCTCCTCCTCTACTCCGCTCTTCCTCTCCTCACTCCTTCTCCTCCCCCTTATTGCGACCACTGCTTCAAAACCCTAAACCCACAAACCGCCCCCATTTCACTCTGCCAATCCTGCTCCCTCCACGCCTTCTGCACCCCCAATTGCCTCTCCGCCGCCCAGTCCTCCTCCCACACTCAATGGGTCTGCCAATCCCTCACGAAATTACGAAATTGCCACTCCCCGCTCTCCGGCCAGCCCGCCGACCGTCAGGTCCAAGCTCGCTTCTTGATCGCCGCTTACAACCTCGCCGTCACTTCGCCGTCGAGTTTCCAGGTGCTGCTCTCTCTTCAGGGCCAGCCGCAGGACTCCGCCGCCGACGCTCAGTTCCTGCATTCTCTGATTTCGACCCTCTGCCCTCCGCCGCCGCCGCCGCCGCAGCAGCAACTGTTTTCGGTGGAGCTCACGGCGGCGCTGCTGGCCAAGGACAAGATGAATGCGTTTGGATTGATGGAGCCCCCTTCGGAATTTGGGCTGAGATCGAGCAGAGCCTATGGGATTTATCCCAAGGCCTCGTTTTTCAACCATGATTGTCTCCCCAATGCGTGCCGATTTGATTATGTTGATGAAGGCAGCACGGAGATTATTGTGAGGATGATTCACGATGTTCCGGAGGGGAGGGAGATTTGCCTGAGCTACTTTCCAGTTAACCAGGCTTATTCGAGCAGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTGTGTCAATGTGATCGATGCAAGGTTGAGGCGAATTGGTCTGACAATGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATTGAAGTAGAAGCTCAAGGAGAAGCTGATTTTCCACATGCATATTTCTTTGTGAGATTTATGTGTAGTAGAACCCATTGCTGGGGCACGCTAGCGCCTTTGCCCCCGAAAGACGATGGAACTCCTTCGGATGCTATGGAATGCAATGTGTGTGGAAGTGTTAAGAAAGATGAGGAGATTAGTGGTCATGGACAAAATGGGCTCTCTTTGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

398

Amino Acids

43.59

Weight (kDa)

4.74

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 211 - 261 5.5e-08 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 943
AccBSI CCGCTC 2 cut(s) 125, 331
AccII CGCG 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 754
AcoI YGGCCR 3 cut(s) 82, 337, 564
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 419
AfiI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 937, 943, 1059, 1060
AgsI TTSAA 3 cut(s) 175, 667, 983
AjnI CCWGG 3 cut(s) 417, 795, 936
AluBI AGCT 6 cut(s) 365, 547, 780, 968, 992, 1004
AluI AGCT 6 cut(s) 365, 547, 780, 968, 992, 1004
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 683
AlwNI CAGNNNCTG 4 cut(s) 424, 475, 532, 968
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 5 cut(s) 82, 337, 439, 564, 654
ApeKI GCWGC 5 cut(s) 424, 523, 526, 559, 717
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 1102
AspLEI GCGC 2 cut(s) 559, 1075
AspS9I GGNCC 3 cut(s) 358, 439, 928
AsuHPI GGTGA 1 cut(s) 31
AsuNHI GCTAGC 1 cut(s) 1069
AvaII GGWCC 2 cut(s) 358, 928
BaeGI GKGCMC 1 cut(s) 1067
BalI TGGCCA 1 cut(s) 566
BanII GRGCYC 3 cut(s) 549, 603, 1182
Bbv12I GWGCWC 1 cut(s) 549
BbvCI CCTCAGC 2 cut(s) 828, 912
BbvI GCAGC 5 cut(s) 411, 535, 538, 546, 729
BccI CCATC 3 cut(s) 589, 1088, 1184
BceAI ACGGC 3 cut(s) 380, 391, 567
BciT130I CCWGG 3 cut(s) 419, 797, 938
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 1 cut(s) 1070
BfoI RGCGCY 2 cut(s) 560, 1076
BlpI GCTNAGC 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 419, 797, 938
Bme18I GGWCC 2 cut(s) 358, 928
BmgT120I GGNCC 3 cut(s) 358, 439, 928
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 3 cut(s) 419, 797, 938
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 851, 1099
BmtI GCTAGC 1 cut(s) 1073
BmuI ACTGGG 1 cut(s) 259
Bpu10I CCTNAGC 3 cut(s) 776, 828, 912
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 978
Bsa29I ATCGAT 1 cut(s) 859
BsaJI CCNNGG 2 cut(s) 567, 651
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 335, 448, 937, 943, 1059, 1060
Bse1I ACTGG 2 cut(s) 265, 788
Bse3DI GCAATG 3 cut(s) 12, 1054, 1129
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 3 cut(s) 419, 797, 938
BseCI ATCGAT 1 cut(s) 859
BseDI CCNNGG 2 cut(s) 567, 651
BseGI GGATG 4 cut(s) 744, 928, 1114, 1195
BseLI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 937, 943, 1059, 1060
BseMI GCAATG 3 cut(s) 12, 1054, 1129
BseMII CTCAG 6 cut(s) 57, 482, 611, 767, 819, 903
BseNI ACTGG 2 cut(s) 265, 788
BseRI GAGGAG 8 cut(s) 96, 101, 104, 125, 138, 262, 908, 1166
BseSI GKGCMC 1 cut(s) 1067
BseXI GCAGC 5 cut(s) 411, 535, 538, 546, 729
BseYI CCCAGC 2 cut(s) 968, 1059
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 5 cut(s) 84, 339, 441, 566, 656
BshVI ATCGAT 1 cut(s) 859
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 336, 755
BslI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 937, 943, 1059, 1060
BsmAI GTCTC 1 cut(s) 683
BsmI GAATGC 3 cut(s) 478, 586, 1124
BsnI GGCC 5 cut(s) 84, 339, 441, 566, 656
Bsp1286I GDGCHC 4 cut(s) 549, 603, 1067, 1182
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 3 cut(s) 375, 623, 856
Bsp1720I GCTNAGC 1 cut(s) 66
BspANI GGCC 5 cut(s) 84, 339, 441, 566, 656
BspCNI CTCAG 6 cut(s) 58, 481, 612, 768, 820, 904
BspDI ATCGAT 1 cut(s) 859
BspEI TCCGGA 1 cut(s) 754
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 600
BspOI GCTAGC 1 cut(s) 1073
BspQI GCTCTTC 1 cut(s) 132
BsrBI CCGCTC 2 cut(s) 125, 331
BsrDI GCAATG 3 cut(s) 12, 1054, 1129
BsrI ACTGG 2 cut(s) 265, 788
BssECI CCNNGG 2 cut(s) 567, 651
BssMI GATC 3 cut(s) 375, 623, 856
BssT1I CCWWGG 2 cut(s) 567, 651
Bst2UI CCWGG 3 cut(s) 419, 797, 938
Bst4CI ACNGT 2 cut(s) 353, 534
Bst6I CTCTTC 2 cut(s) 132, 438
BstC8I GCNNGC 9 cut(s) 341, 345, 367, 443, 564, 691, 812, 1067, 1071
BstDEI CTNAG 6 cut(s) 66, 468, 620, 776, 828, 912
BstF5I GGATG 4 cut(s) 744, 928, 1114, 1195
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 560, 1076
BstHHI GCGC 2 cut(s) 559, 1075
BstKTI GATC 3 cut(s) 378, 626, 859
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 3 cut(s) 375, 623, 856
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 9 cut(s) 168, 219, 464, 514, 517, 520, 523, 526, 563
BstNI CCWGG 3 cut(s) 419, 797, 938
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 3 cut(s) 417, 795, 936
BstSLI GKGCMC 1 cut(s) 1067
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 411, 535, 538, 546, 729
Bsu15I ATCGAT 1 cut(s) 859
BsuRI GGCC 5 cut(s) 84, 339, 441, 566, 656
BsuTUI ATCGAT 1 cut(s) 859
BtsCI GGATG 4 cut(s) 744, 928, 1114, 1195
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 9 cut(s) 341, 345, 367, 443, 564, 691, 812, 1067, 1071
CaiI CAGNNNCTG 4 cut(s) 424, 475, 532, 968
CfoI GCGC 2 cut(s) 559, 1075
Cfr13I GGNCC 3 cut(s) 358, 439, 928
ClaI ATCGAT 1 cut(s) 859
CseI GACGC 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 1111, 1146
CviAII CATG 3 cut(s) 671, 1016, 1166
DdeI CTNAG 6 cut(s) 66, 468, 620, 776, 828, 912
DpnI GATC 3 cut(s) 377, 625, 858
DpnII GATC 3 cut(s) 375, 623, 856
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 3 cut(s) 82, 337, 564
Eam1104I CTCTTC 2 cut(s) 132, 438
EarI CTCTTC 2 cut(s) 132, 438
EciI GGCGGA 3 cut(s) 247, 445, 495
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 2 cut(s) 567, 651
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 3 cut(s) 549, 603, 1182
Eco47I GGWCC 2 cut(s) 358, 928
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 547
EcoRII CCWGG 3 cut(s) 417, 795, 936
EcoT14I CCWWGG 2 cut(s) 567, 651
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 3 cut(s) 549, 603, 1182
ErhI CCWWGG 2 cut(s) 567, 651
FaeI CATG 3 cut(s) 674, 1019, 1169
FatI CATG 3 cut(s) 670, 1015, 1165
FauI CCCGC 2 cut(s) 336, 352
FokI GGATG 3 cut(s) 751, 935, 1121
FriOI GRGCYC 3 cut(s) 549, 603, 1182
FspBI CTAG 1 cut(s) 1070
GlaI GCGC 2 cut(s) 558, 1074
GsaI CCCAGC 2 cut(s) 972, 1063
HaeII RGCGCY 2 cut(s) 560, 1076
HaeIII GGCC 5 cut(s) 84, 339, 441, 566, 656
HapII CCGG 2 cut(s) 336, 755
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 559, 1075
Hin1II CATG 3 cut(s) 674, 1019, 1169
Hin6I GCGC 2 cut(s) 557, 1073
HinP1I GCGC 2 cut(s) 557, 1073
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 6 cut(s) 101, 452, 742, 820, 953, 959
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 2 cut(s) 336, 755
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 6 cut(s) 486, 610, 886, 958, 964, 1108
Hpy188III TCNNGA 4 cut(s) 304, 373, 746, 755
Hpy8I GTNNAC 1 cut(s) 793
Hpy99I CGWCG 2 cut(s) 412, 467
HpyAV CCTTC 8 cut(s) 42, 153, 244, 615, 707, 893, 941, 1113
HpyCH4III ACNGT 2 cut(s) 353, 534
HpyCH4V TGCA 5 cut(s) 240, 478, 864, 1019, 1122
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 219, 464, 514, 517, 520, 523, 526, 563
HpyF3I CTNAG 6 cut(s) 66, 468, 620, 776, 828, 912
Hsp92II CATG 3 cut(s) 674, 1019, 1169
HspAI GCGC 2 cut(s) 557, 1073
Kpn2I TCCGGA 1 cut(s) 754
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 3 cut(s) 375, 623, 856
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 227, 544, 598
Lsp1109I GCAGC 5 cut(s) 411, 535, 538, 546, 729
LweI GCATC 2 cut(s) 851, 1099
MaeI CTAG 1 cut(s) 1070
MaeIII GTNAC 2 cut(s) 397, 974
MalI GATC 3 cut(s) 377, 625, 858
MbiI CCGCTC 2 cut(s) 125, 331
MboI GATC 3 cut(s) 375, 623, 856
MboII GAAGA 2 cut(s) 119, 425
MfeI CAATTG 1 cut(s) 247
MhlI GDGCHC 4 cut(s) 549, 603, 1067, 1182
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 5 cut(s) 247, 308, 316, 611, 877
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 3 cut(s) 95, 446, 814
Mox20I TGGCCA 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 1021
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 1102
MscI TGGCCA 1 cut(s) 566
MseI TTAA 2 cut(s) 792, 1140
Msp20I TGGCCA 1 cut(s) 566
MspI CCGG 2 cut(s) 336, 755
MspR9I CCNGG 3 cut(s) 419, 797, 938
MunI CAATTG 1 cut(s) 247
Mva1269I GAATGC 3 cut(s) 478, 586, 1124
MvaI CCWGG 3 cut(s) 419, 797, 938
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 9 cut(s) 168, 219, 464, 514, 517, 520, 523, 526, 563
NdeII GATC 3 cut(s) 375, 623, 856
NheI GCTAGC 1 cut(s) 1069
NlaIII CATG 3 cut(s) 674, 1019, 1169
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 397, 974
NsiI ATGCAT 1 cut(s) 1021
NspI RCATGY 1 cut(s) 1019
PceI AGGCCT 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 3 cut(s) 478, 586, 1124
PdmI GAANNNNTTC 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 742, 953, 959
PflMI CCANNNNNTGG 1 cut(s) 943
PleI GAGTC 3 cut(s) 95, 446, 814
PpsI GAGTC 3 cut(s) 95, 446, 814
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 3 cut(s) 417, 795, 936
PspFI CCCAGC 2 cut(s) 968, 1059
PspGI CCWGG 3 cut(s) 417, 795, 936
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 3 cut(s) 358, 439, 928
PstNI CAGNNNCTG 4 cut(s) 424, 475, 532, 968
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 792, 1140
Sau3AI GATC 3 cut(s) 375, 623, 856
Sau96I GGNCC 3 cut(s) 358, 439, 928
SchI GAGTC 3 cut(s) 95, 446, 814
ScrFI CCNGG 3 cut(s) 419, 797, 938
SduI GDGCHC 4 cut(s) 549, 603, 1067, 1182
SfaNI GCATC 2 cut(s) 851, 1099
SinI GGWCC 2 cut(s) 358, 928
SmlI CTYRAG 1 cut(s) 993
SmoI CTYRAG 1 cut(s) 993
Sse9I AATT 5 cut(s) 247, 308, 316, 611, 877
SseBI AGGCCT 1 cut(s) 656
SspMI CTAG 1 cut(s) 1070
SstI GAGCTC 1 cut(s) 549
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 417, 795, 936
StyI CCWWGG 2 cut(s) 567, 651
TaaI ACNGT 2 cut(s) 353, 534
TaqI TCGA 5 cut(s) 410, 491, 626, 806, 859
TasI AATT 5 cut(s) 247, 308, 316, 611, 877
TfiI GAWTC 3 cut(s) 742, 953, 959
Tru1I TTAA 2 cut(s) 792, 1140
Tru9I TTAA 2 cut(s) 792, 1140
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 2 cut(s) 397, 974
TseI GCWGC 5 cut(s) 424, 523, 526, 559, 717
Tsp45I GTSAC 2 cut(s) 397, 974
TspDTI ATGAA 2 cut(s) 593, 726
TspGWI ACGGA 2 cut(s) 44, 737
TspRI CASTG 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 943
VpaK11BI GGWCC 2 cut(s) 358, 928
XapI RAATTY 1 cut(s) 611
XceI RCATGY 1 cut(s) 1019
XmnI GAANNNNTTC 1 cut(s) 1102
XspI CTAG 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.