RLG00000006375

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009428
Physical Location & Seq
Forward (+)
6602070 .. 6603980
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006375

Sequence Viewer

Length: 1476 bp
ATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTTTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGCGGAGATTAAACAGTCGGAAACAACTGCAAAAGTTCCTGATGGGAGTGGGGAGATTAAGCGGTCGGAAACACCTCTAAAAGTTCCTGATGGGAGTGGGGAGATTAAGCGGTCGGAAACACCTCTAAAAGTTCCTGATGGGAGTGGGGTGATTAAGCAGTCGGAAACTCCTGCAAAAGTTCCTGATCGGAGTGGGGAGAATATTAAGAAGTCGGAAACTCCTGCAAAAGTTCCTTATGGGAGCGGGGAGAGTAAGCAGTCGGAAACACTTCCAAAAGTTAATGATGGGAGGCCATCTCCTGCAGTGCATTCCAAAGTTGTAGAGGCTACTGCTAAGGGAGGTCATCGGCGTGGCCCATCAGGAACAGTACTTGCAAAAGTTAATGATGGGAGTGGAGGCAGTAAGCACTCGTCCTCTCCTCCACTCTCATCCAAAGTTGCAGAGGCTACTGCTAAGGGAGGTCATCAGCGTGCCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATAGATGATCTGTTCCAAGTGGACTCAAATAGTTTCTCTACTTCAACACATATTCCTCCCCTCCCTAAAGATTATGGCCCAAACTCTCCTTATCGCCCACCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCAACGGAATACCCTGCAGTCCAAATGATGGATCGGTATGGAGGATATGATCCTTACAGGATCCCATCTTCCGTGTTTGATACAAGTAATGTATCCAACAAAGAGATGGAATGGAGCGCTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAGCAGTTTTTCCAGAGACCATATACTTATGTTGGGTGATTTGGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCCACCTCCAGTAGTAGAAACAGAAATTAGTAGGATCGAAGAGGGGAAAGAATCAGCAGCTGAAGAAGTGGCAGATGCGAACATCAAGGACACTGAACATGCAAGTGCTGAAAATCATAGTGAGGGGTGGGCACCACCTCCAACTGTAGCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCATTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGCTCCTTTGCCTTCCCAATCTTCCAGGAGATTCTGAAGAGCAGCGTCCGGAGCCACCACCACCACCACCAGCCAGCAGGACAAAAAAATCAAAGAAAAAAAAGACCCGTTGGCTTCCTTGCTTTTCTTGTTCTTGGTGCAAGTGGGGCTGTTGTTGTTCTTGTCGTCGGCTTTGTTCTTGTCCACGTTTTTTCGGTCGCTGTTGTTGTTGCTGTTAAGAAATGGAAGTGCCATGGATATCATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

492

Amino Acids

52.41

Weight (kDa)

7.07

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1138
AccB7I CCANNNNNTGG 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 1275
AciI CCGC 5 cut(s) 98, 157, 205, 339, 1189
AclWI GGATC 6 cut(s) 622, 801, 806, 817, 830, 1049
AcuI CTGAAG 2 cut(s) 1089, 1283
AfaI GTAC 1 cut(s) 465
AfeI AGCGCT 1 cut(s) 880
AfiI CCNNNNNNNGG 1 cut(s) 790
AgsI TTSAA 1 cut(s) 672
AjnI CCWGG 1 cut(s) 1251
AluBI AGCT 4 cut(s) 31, 583, 1067, 1473
AluI AGCT 4 cut(s) 31, 583, 1067, 1473
Alw26I GTCTC 1 cut(s) 930
AlwI GGATC 6 cut(s) 622, 801, 806, 817, 830, 1049
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 989
Aor13HI TCCGGA 1 cut(s) 1275
Aor51HI AGCGCT 1 cut(s) 880
AoxI GGCC 3 cut(s) 386, 448, 703
ApeKI GCWGC 4 cut(s) 881, 1064, 1157, 1269
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 3 cut(s) 449, 704, 965
AsuHPI GGTGA 4 cut(s) 256, 586, 742, 968
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 1 cut(s) 965
BaeGI GKGCMC 2 cut(s) 571, 1141
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 1 cut(s) 1138
BauI CACGAG 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 899
BbvI GCAGC 4 cut(s) 868, 1076, 1169, 1281
BciT130I CCWGG 1 cut(s) 1253
BciVI GTATCC 1 cut(s) 865
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 4 cut(s) 24, 1173, 1221, 1474
BfmI CTRYAG 3 cut(s) 396, 777, 1152
BfoI RGCGCY 1 cut(s) 882
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 4 cut(s) 882, 1065, 1158, 1270
BlsI GCNGC 4 cut(s) 883, 1066, 1159, 1271
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 1253
Bme18I GGWCC 1 cut(s) 965
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 449, 704, 965
BmiI GGNNCC 4 cut(s) 824, 966, 1140, 1280
BmrFI CCNGG 1 cut(s) 1253
BmsI GCATC 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 1 cut(s) 999
Bpu10I CCTNAGC 2 cut(s) 429, 549
BsaI GGTCTC 1 cut(s) 930
BsaJI CCNNGG 1 cut(s) 1459
BsaWI WCCGGW 1 cut(s) 1275
BsaXI ACNNNNNCTCC 2 cut(s) 997, 1027
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse1I ACTGG 1 cut(s) 1016
BseAI TCCGGA 1 cut(s) 1275
BseBI CCWGG 1 cut(s) 1253
BseDI CCNNGG 1 cut(s) 1459
BseGI GGATG 2 cut(s) 524, 572
BseLI CCNNNNNNNGG 1 cut(s) 790
BseNI ACTGG 1 cut(s) 1016
BseRI GAGGAG 2 cut(s) 65, 504
BseSI GKGCMC 2 cut(s) 571, 1141
BseXI GCAGC 4 cut(s) 868, 1076, 1169, 1281
Bsh1285I CGRYCG 3 cut(s) 161, 209, 1425
BshFI GGCC 3 cut(s) 388, 450, 705
BshNI GGYRCC 1 cut(s) 1138
BsiEI CGRYCG 3 cut(s) 161, 209, 1425
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 2 cut(s) 65, 1276
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 1 cut(s) 930
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 388, 450, 705
Bso31I GGTCTC 1 cut(s) 930
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 2 cut(s) 571, 1141
Bsp13I TCCGGA 1 cut(s) 1275
Bsp143I GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
Bsp19I CCATGG 1 cut(s) 1459
BspACI CCGC 5 cut(s) 98, 157, 205, 339, 1189
BspANI GGCC 3 cut(s) 388, 450, 705
BspEI TCCGGA 1 cut(s) 1275
BspLI GGNNCC 4 cut(s) 824, 966, 1140, 1280
BspMAI CTGCAG 2 cut(s) 400, 781
BspPI GGATC 6 cut(s) 622, 801, 806, 817, 830, 1049
BspQI GCTCTTC 1 cut(s) 1259
BspT107I GGYRCC 1 cut(s) 1138
BspTNI GGTCTC 1 cut(s) 930
BsrBI CCGCTC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 1016
BssECI CCNNGG 1 cut(s) 1459
BssMI GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
BssSI CACGAG 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 1459
Bst2BI CACGAG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 1253
Bst4CI ACNGT 3 cut(s) 111, 463, 1153
Bst6I CTCTTC 2 cut(s) 1041, 1259
BstC8I GCNNGC 3 cut(s) 29, 567, 1302
BstDEI CTNAG 2 cut(s) 429, 549
BstDSI CCRYGG 1 cut(s) 1459
BstEII GGTNACC 1 cut(s) 759
BstF5I GGATG 2 cut(s) 524, 572
BstH2I RGCGCY 1 cut(s) 882
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 8 cut(s) 91, 283, 617, 637, 796, 814, 825, 1044
BstMAI GTCTC 1 cut(s) 930
BstMBI GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
BstMCI CGRYCG 3 cut(s) 161, 209, 1425
BstMWI GCNNNNNNNGC 3 cut(s) 24, 1278, 1373
BstNI CCWGG 1 cut(s) 1253
BstNSI RCATGY 1 cut(s) 1109
BstPI GGTNACC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 1251
BstSFI CTRYAG 3 cut(s) 396, 777, 1152
BstSLI GKGCMC 2 cut(s) 571, 1141
BstV1I GCAGC 4 cut(s) 868, 1076, 1169, 1281
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 822
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstYI RGATCY 1 cut(s) 822
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 3 cut(s) 388, 450, 705
BtgI CCRYGG 1 cut(s) 1459
BtsCI GGATG 2 cut(s) 524, 572
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 405, 1098
Cac8I GCNNGC 3 cut(s) 29, 567, 1302
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 449, 704, 965
CseI GACGC 2 cut(s) 729, 1261
Csp6I GTAC 1 cut(s) 464
CviAII CATG 3 cut(s) 14, 1106, 1460
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 429, 549
DpnI GATC 8 cut(s) 90, 282, 616, 636, 795, 813, 824, 1043
DpnII GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
Eam1104I CTCTTC 2 cut(s) 1041, 1259
EarI CTCTTC 2 cut(s) 1041, 1259
Eco130I CCWWGG 1 cut(s) 1459
Eco31I GGTCTC 1 cut(s) 930
Eco32I GATATC 1 cut(s) 1466
Eco47I GGWCC 1 cut(s) 965
Eco47III AGCGCT 1 cut(s) 880
Eco57I CTGAAG 2 cut(s) 1089, 1283
Eco88I CYCGRG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 759
EcoO65I GGTNACC 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 1251
EcoRV GATATC 1 cut(s) 1466
EcoT14I CCWWGG 1 cut(s) 1459
ErhI CCWWGG 1 cut(s) 1459
FaeI CATG 3 cut(s) 17, 1109, 1463
FatI CATG 3 cut(s) 13, 1105, 1459
FauI CCCGC 2 cut(s) 332, 1196
Fnu4HI GCNGC 4 cut(s) 882, 1065, 1158, 1270
FokI GGATG 2 cut(s) 511, 559
Fsp4HI GCNGC 4 cut(s) 882, 1065, 1158, 1270
FspBI CTAG 4 cut(s) 24, 1173, 1221, 1474
GlaI GCGC 1 cut(s) 880
GluI GCNGC 4 cut(s) 882, 1065, 1158, 1270
GsuI CTGGAG 1 cut(s) 999
HaeII RGCGCY 1 cut(s) 882
HaeIII GGCC 3 cut(s) 388, 450, 705
HapII CCGG 2 cut(s) 65, 1276
HgaI GACGC 2 cut(s) 729, 1261
HhaI GCGC 1 cut(s) 881
Hin1II CATG 3 cut(s) 17, 1109, 1463
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 650, 893, 1058, 1258
HpaII CCGG 2 cut(s) 65, 1276
HphI GGTGA 4 cut(s) 256, 586, 742, 968
Hpy166II GTNNAC 3 cut(s) 649, 1001, 1411
Hpy8I GTNNAC 3 cut(s) 649, 1001, 1411
Hpy99I CGWCG 1 cut(s) 1397
HpyAV CCTTC 1 cut(s) 1249
HpyCH4III ACNGT 3 cut(s) 111, 463, 1153
HpyCH4IV ACGT 1 cut(s) 1413
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 1278, 1373
HpyF3I CTNAG 2 cut(s) 429, 549
HpySE526I ACGT 1 cut(s) 1413
Hsp92II CATG 3 cut(s) 17, 1109, 1463
HspAI GCGC 1 cut(s) 879
Kpn2I TCCGGA 1 cut(s) 1275
Kzo9I GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
LguI GCTCTTC 1 cut(s) 1259
LmnI GCTCC 4 cut(s) 336, 876, 1235, 1278
Lsp1109I GCAGC 4 cut(s) 868, 1076, 1169, 1281
LweI GCATC 1 cut(s) 1072
MaeI CTAG 4 cut(s) 24, 1173, 1221, 1474
MaeII ACGT 1 cut(s) 1413
MaeIII GTNAC 2 cut(s) 748, 759
MalI GATC 8 cut(s) 90, 282, 616, 636, 795, 813, 824, 1043
MbiI CCGCTC 1 cut(s) 339
MboI GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
MboII GAAGA 7 cut(s) 597, 822, 899, 1058, 1082, 1240, 1276
MflI RGATCY 1 cut(s) 822
MhlI GDGCHC 2 cut(s) 571, 1141
MluCI AATT 2 cut(s) 983, 1032
MlyI GAGTC 2 cut(s) 644, 902
MmeI TCCRAC 9 cut(s) 93, 141, 189, 237, 288, 336, 882, 992, 1172
MroI TCCGGA 1 cut(s) 1275
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 9 cut(s) 105, 153, 201, 249, 300, 375, 477, 1211, 1443
MslI CAYNNNNRTG 4 cut(s) 444, 564, 1110, 1197
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 2 cut(s) 65, 1276
MspR9I CCNGG 1 cut(s) 1253
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 1253
MwoI GCNNNNNNNGC 3 cut(s) 24, 1278, 1373
NcoI CCATGG 1 cut(s) 1459
NdeII GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
NlaIII CATG 3 cut(s) 17, 1109, 1463
NlaIV GGNNCC 4 cut(s) 824, 966, 1140, 1280
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 1 cut(s) 1109
PaeR7I CTCGAG 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 1259
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 1058, 1258
PflMI CCANNNNNTGG 1 cut(s) 790
PfoI TCCNGGA 1 cut(s) 1251
PkrI GCNGC 4 cut(s) 883, 1066, 1159, 1271
PleI GAGTC 2 cut(s) 644, 901
PpsI GAGTC 2 cut(s) 644, 901
Psp6I CCWGG 1 cut(s) 1251
PspEI GGTNACC 1 cut(s) 759
PspGI CCWGG 1 cut(s) 1251
PspN4I GGNNCC 4 cut(s) 824, 966, 1140, 1280
PspPI GGNCC 3 cut(s) 449, 704, 965
PstI CTGCAG 2 cut(s) 400, 781
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 4 cut(s) 444, 564, 1110, 1197
SapI GCTCTTC 1 cut(s) 1259
SaqAI TTAA 9 cut(s) 105, 153, 201, 249, 300, 375, 477, 1211, 1443
SatI GCNGC 4 cut(s) 882, 1065, 1158, 1270
Sau3AI GATC 8 cut(s) 88, 280, 614, 634, 793, 811, 822, 1041
Sau96I GGNCC 3 cut(s) 449, 704, 965
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 2 cut(s) 644, 902
ScrFI CCNGG 1 cut(s) 1253
SduI GDGCHC 2 cut(s) 571, 1141
SfaNI GCATC 1 cut(s) 1072
SfcI CTRYAG 3 cut(s) 396, 777, 1152
Sfr274I CTCGAG 1 cut(s) 989
SinI GGWCC 1 cut(s) 965
SlaI CTCGAG 1 cut(s) 989
SmiMI CAYNNNNRTG 4 cut(s) 444, 564, 1110, 1197
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
Sse9I AATT 2 cut(s) 983, 1032
SsiI CCGC 5 cut(s) 98, 157, 205, 339, 1189
SspI AATATT 1 cut(s) 298
SspMI CTAG 4 cut(s) 24, 1173, 1221, 1474
StyD4I CCNGG 1 cut(s) 1251
StyI CCWWGG 1 cut(s) 1459
TaaI ACNGT 3 cut(s) 111, 463, 1153
TaiI ACGT 1 cut(s) 1416
TaqI TCGA 2 cut(s) 990, 1044
TaqII GACCGA 1 cut(s) 1411
TasI AATT 2 cut(s) 983, 1032
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 2 cut(s) 1058, 1258
Tru1I TTAA 9 cut(s) 105, 153, 201, 249, 300, 375, 477, 1211, 1443
Tru9I TTAA 9 cut(s) 105, 153, 201, 249, 300, 375, 477, 1211, 1443
TscAI CASTG 2 cut(s) 405, 1105
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 4 cut(s) 881, 1064, 1157, 1269
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 2 cut(s) 597, 899
TspGWI ACGGA 2 cut(s) 782, 823
TspRI CASTG 2 cut(s) 405, 1105
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 965
XceI RCATGY 1 cut(s) 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 989
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 24, 1173, 1221, 1474
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.