Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

291820 .. 294175

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGATGGATTGATGGAAACGGTATCAATCTCTCCGCAAATTATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTGTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGTGGAGATTATACAGTCGGAAACAACCGCAAAAGTTCCTGATCGGAGTGGGGAGATTAAGCAGTCGGAAACACCTCTAAGAGTTCCTGATGGGAGTGGAGAGATTAAGCAGTCGGAAACTCCCGCAAAAGTTCCTGATGGGAGTGGGGAGATTAAGAAGTCGGAAACTCCTGCAAAAGTTCCTGATGGGAGCGGGGAGAGTAAGCAGTCGGAAACACTTCCAAAAGTTAATGATGGGAGGCCATCTCCTGCAGTGCCGTCCAAAGTTGTAGAGGCTACTGCTAAGGGAGGTCATCGGCGTGCCCCATCGGAAACACTTCCAGACGTTAATGATGGGAATGGAGGCAGTAAGCACCCGTCCTCTCCTTCACCCTCATCCAAAGTTGTAGAGGCTACTGCTAAGCGAGGTCATTGGCGTGGCCCATCAGGAACACTTTCAAAAGTTAATGATGGGAGTGGAGGCAGTAAGCACTCGTCCTCTCCTCCAATCTCATCCAAAGTTGCAGAGGCTACTGCTAAGGGAGGTCATCAGCATGTCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATGGATGATCTGTTCCAAGTGGACTCAAATAGATTCTCTACTTCAACACATATTCCTCCCCTCCCTAAAGATTATGGCCCAAACTCTCCTTATCGCCCATCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCGACGGAATCCCCTGCAGTCCAAATGATGGATCGGTATGGAGGATATGATCCTTACAGGATCCCATCTTCCGTGTTTGATACAAGTAATGTATCCAACAAAGAAATGGAATGGAGCGCTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAGCAGTTTTTCCAGAGACCATATACTTATGTTGAGTGATTTGGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCCACCTCCGGTAGTAGAAACAGAAATTACTACGATCGAAGAGGGGAGAGAATCAGCAGCTGAAGAAGTGGAAGATGCGAACATCAAGGACACTGAACATACAAGTGCTGAAAATCATAGTGAGGGGAGGGTACCACCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCGTTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGGTCCTTTGCCTTCCCAATGTACGTCTATATATATGATCTAAGTTTGACAGATGGGACGAAAAATTCTCTGAAGCTTCCAGGAGATTCTGAAGAGCAGCGTCCGGAGCCACCACCACCACCACCACCAGCCAGCAGGACAAAAAAATCAAAGAAAAAAAAGACCCGTTGGCTTCCTTGCGTTTCTTGTTCTTGGTGCAAGTGGAGCTGTTGTTGTTCTTGTCGTCGGCTTTGTTCTTGTCCACGTTTTTTCCGTCGCTGTTGTTGTTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

531

Amino Acids

57.15

Weight (kDa)

6.39

Isoelectric Point (pI)

67.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1243
AccB1I	GGYRCC	1 cut(s)	1243
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccBSI	CCGCTC	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	1423
AciI	CCGC	5 cut(s)	35, 165, 261, 330, 1282
AclWI	GGATC	5 cut(s)	727, 906, 911, 922, 935
AcsI	RAATTY	1 cut(s)	1384
AcuI	CTGAAG	3 cut(s)	1194, 1412, 1431
AfaI	GTAC	2 cut(s)	1245, 1343
AfeI	AGCGCT	1 cut(s)	985
AfiI	CCNNNNNNNGG	1 cut(s)	895
AgsI	TTSAA	2 cut(s)	576, 777
AjnI	CCWGG	1 cut(s)	1399
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	5 cut(s)	73, 688, 1172, 1396, 1527
AluI	AGCT	5 cut(s)	73, 688, 1172, 1396, 1527
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	5 cut(s)	727, 906, 911, 922, 935
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	1094
Aor13HI	TCCGGA	1 cut(s)	1423
Aor51HI	AGCGCT	1 cut(s)	985
AoxI	GGCC	3 cut(s)	377, 556, 808
ApeKI	GCWGC	3 cut(s)	986, 1169, 1417
ApoI	RAATTY	1 cut(s)	1384
Asp700I	GAANNNNTTC	3 cut(s)	354, 453, 571
Asp718I	GGTACC	1 cut(s)	1243
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	4 cut(s)	557, 809, 1070, 1323
AsuHPI	GGTGA	3 cut(s)	498, 691, 847
AvaI	CYCGRG	1 cut(s)	1094
AvaII	GGWCC	2 cut(s)	1070, 1323
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	927
BanI	GGYRCC	1 cut(s)	1243
BauI	CACGAG	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	1004
BbvI	GCAGC	3 cut(s)	973, 1181, 1429
BceAI	ACGGC	2 cut(s)	379, 1269
BciT130I	CCWGG	1 cut(s)	1401
BciVI	GTATCC	1 cut(s)	970
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	3 cut(s)	66, 1266, 1314
BfmI	CTRYAG	2 cut(s)	387, 882
BfoI	RGCGCY	1 cut(s)	987
BfuI	GTATCC	1 cut(s)	970
BisI	GCNGC	3 cut(s)	987, 1170, 1418
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	3 cut(s)	988, 1171, 1419
Bme1390I	CCNGG	1 cut(s)	1401
Bme18I	GGWCC	2 cut(s)	1070, 1323
BmeT110I	CYCGRG	1 cut(s)	1094
BmgT120I	GGNCC	4 cut(s)	557, 809, 1070, 1323
BmiI	GGNNCC	4 cut(s)	929, 1071, 1245, 1428
BmrFI	CCNGG	1 cut(s)	1401
BmsI	GCATC	1 cut(s)	1177
BpiI	GAAGAC	1 cut(s)	1004
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
Bpu10I	CCTNAGC	2 cut(s)	420, 654
Bpu1102I	GCTNAGC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	1035
BsaWI	WCCGGW	2 cut(s)	1120, 1423
BsaXI	ACNNNNNCTCC	4 cut(s)	1102, 1132, 1516, 1546
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
BseAI	TCCGGA	1 cut(s)	1423
BseBI	CCWGG	1 cut(s)	1401
BseGI	GGATG	5 cut(s)	10, 512, 629, 677, 742
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseRI	GAGGAG	2 cut(s)	107, 609
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	3 cut(s)	973, 1181, 1429
Bsh1285I	CGRYCG	1 cut(s)	1149
BshFI	GGCC	3 cut(s)	379, 558, 810
BshNI	GGYRCC	1 cut(s)	1243
BsiEI	CGRYCG	1 cut(s)	1149
BsiHKCI	CYCGRG	1 cut(s)	1094
BsiSI	CCGG	3 cut(s)	107, 1121, 1424
BslFI	GGGAC	2 cut(s)	659, 1390
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	1 cut(s)	1035
BsmFI	GGGAC	2 cut(s)	659, 1390
BsnI	GGCC	3 cut(s)	379, 558, 810
Bso31I	GGTCTC	1 cut(s)	1035
BsoBI	CYCGRG	1 cut(s)	1094
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp13I	TCCGGA	1 cut(s)	1423
Bsp143I	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	5 cut(s)	35, 165, 261, 330, 1282
BspANI	GGCC	3 cut(s)	379, 558, 810
BspEI	TCCGGA	1 cut(s)	1423
BspLI	GGNNCC	4 cut(s)	929, 1071, 1245, 1428
BspMAI	CTGCAG	2 cut(s)	391, 886
BspPI	GGATC	5 cut(s)	727, 906, 911, 922, 935
BspQI	GCTCTTC	1 cut(s)	1407
BspT107I	GGYRCC	1 cut(s)	1243
BspTNI	GGTCTC	1 cut(s)	1035
BsrBI	CCGCTC	1 cut(s)	330
BssMI	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
BssSI	CACGAG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	1401
Bst4CI	ACNGT	3 cut(s)	22, 153, 1323
Bst6I	CTCTTC	2 cut(s)	1146, 1407
BstC8I	GCNNGC	3 cut(s)	71, 438, 1453
BstDEI	CTNAG	5 cut(s)	215, 420, 537, 654, 1361
BstEII	GGTNACC	1 cut(s)	864
BstF5I	GGATG	5 cut(s)	10, 512, 629, 677, 742
BstH2I	RGCGCY	1 cut(s)	987
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	9 cut(s)	133, 181, 722, 742, 901, 919, 930, 1149, 1360
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
BstMCI	CGRYCG	1 cut(s)	1149
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 1426, 1524
BstNI	CCWGG	1 cut(s)	1401
BstNSI	RCATGY	1 cut(s)	674
BstPI	GGTNACC	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	1399
BstSFI	CTRYAG	2 cut(s)	387, 882
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	973, 1181, 1429
BstV2I	GAAGAC	1 cut(s)	1004
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	970
BsuRI	GGCC	3 cut(s)	379, 558, 810
BtsCI	GGATG	5 cut(s)	10, 512, 629, 677, 742
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 1203
Cac8I	GCNNGC	3 cut(s)	71, 438, 1453
CaiI	CAGNNNCTG	1 cut(s)	1172
CfoI	GCGC	1 cut(s)	986
Cfr13I	GGNCC	4 cut(s)	557, 809, 1070, 1323
CseI	GACGC	2 cut(s)	834, 1409
Csp6I	GTAC	2 cut(s)	1244, 1342
CviAII	CATG	2 cut(s)	56, 671
CviQI	GTAC	2 cut(s)	1244, 1342
DdeI	CTNAG	5 cut(s)	215, 420, 537, 654, 1361
DpnI	GATC	9 cut(s)	132, 180, 721, 741, 900, 918, 929, 1148, 1359
DpnII	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
Eam1104I	CTCTTC	2 cut(s)	1146, 1407
EarI	CTCTTC	2 cut(s)	1146, 1407
Eco31I	GGTCTC	1 cut(s)	1035
Eco47I	GGWCC	2 cut(s)	1070, 1323
Eco47III	AGCGCT	1 cut(s)	985
Eco57I	CTGAAG	3 cut(s)	1194, 1412, 1431
Eco88I	CYCGRG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	864
EcoO65I	GGTNACC	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	1399
FaeI	CATG	2 cut(s)	59, 674
FaqI	GGGAC	2 cut(s)	659, 1390
FatI	CATG	2 cut(s)	55, 670
FauI	CCCGC	3 cut(s)	268, 323, 1289
Fnu4HI	GCNGC	3 cut(s)	987, 1170, 1418
FokI	GGATG	5 cut(s)	17, 499, 616, 664, 749
Fsp4HI	GCNGC	3 cut(s)	987, 1170, 1418
FspBI	CTAG	3 cut(s)	66, 1266, 1314
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	3 cut(s)	987, 1170, 1418
HaeII	RGCGCY	1 cut(s)	987
HaeIII	GGCC	3 cut(s)	379, 558, 810
HapII	CCGG	3 cut(s)	107, 1121, 1424
HgaI	GACGC	2 cut(s)	834, 1409
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	2 cut(s)	59, 674
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HindIII	AAGCTT	2 cut(s)	71, 1394
HinfI	GANTC	6 cut(s)	755, 765, 875, 998, 1163, 1406
HpaII	CCGG	3 cut(s)	107, 1121, 1424
HphI	GGTGA	3 cut(s)	498, 691, 847
Hpy166II	GTNNAC	3 cut(s)	754, 1106, 1562
Hpy8I	GTNNAC	3 cut(s)	754, 1106, 1562
Hpy99I	CGWCG	3 cut(s)	874, 1548, 1578
HpyAV	CCTTC	2 cut(s)	513, 1342
HpyCH4III	ACNGT	3 cut(s)	22, 153, 1323
HpyCH4IV	ACGT	3 cut(s)	462, 1344, 1564
HpyCH4V	TGCA	5 cut(s)	311, 389, 641, 884, 1518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 1426, 1524
HpyF3I	CTNAG	5 cut(s)	215, 420, 537, 654, 1361
HpySE526I	ACGT	3 cut(s)	462, 1344, 1564
Hsp92II	CATG	2 cut(s)	59, 674
HspAI	GCGC	1 cut(s)	984
Kpn2I	TCCGGA	1 cut(s)	1423
KpnI	GGTACC	1 cut(s)	1247
Kzo9I	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
LguI	GCTCTTC	1 cut(s)	1407
LmnI	GCTCC	4 cut(s)	327, 981, 1426, 1524
Lsp1109I	GCAGC	3 cut(s)	973, 1181, 1429
LweI	GCATC	1 cut(s)	1177
MaeI	CTAG	3 cut(s)	66, 1266, 1314
MaeII	ACGT	3 cut(s)	462, 1344, 1564
MaeIII	GTNAC	2 cut(s)	853, 864
MalI	GATC	9 cut(s)	132, 180, 721, 741, 900, 918, 929, 1148, 1359
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
MboII	GAAGA	7 cut(s)	702, 927, 1004, 1163, 1187, 1196, 1424
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	39, 1088, 1137, 1384
MlyI	GAGTC	2 cut(s)	749, 1007
MmeI	TCCRAC	7 cut(s)	135, 183, 231, 279, 327, 987, 1097
MroI	TCCGGA	1 cut(s)	1423
MroXI	GAANNNNTTC	3 cut(s)	354, 453, 571
MseI	TTAA	8 cut(s)	195, 243, 291, 366, 465, 582, 1304, 1594
MslI	CAYNNNNRTG	5 cut(s)	435, 552, 669, 731, 1215
MspA1I	CMGCKG	1 cut(s)	1172
MspI	CCGG	3 cut(s)	107, 1121, 1424
MspR9I	CCNGG	1 cut(s)	1401
MvaI	CCWGG	1 cut(s)	1401
MwoI	GCNNNNNNNGC	3 cut(s)	66, 1426, 1524
NdeII	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
NlaIII	CATG	2 cut(s)	59, 674
NlaIV	GGNNCC	4 cut(s)	929, 1071, 1245, 1428
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	1094
PciSI	GCTCTTC	1 cut(s)	1407
PcsI	WCGNNNNNNNCGW	1 cut(s)	1570
PdmI	GAANNNNTTC	3 cut(s)	354, 453, 571
PfeI	GAWTC	4 cut(s)	765, 875, 1163, 1406
PflMI	CCANNNNNTGG	1 cut(s)	895
PfoI	TCCNGGA	1 cut(s)	1399
PkrI	GCNGC	3 cut(s)	988, 1171, 1419
Ple19I	CGATCG	1 cut(s)	1149
PleI	GAGTC	2 cut(s)	749, 1006
PpsI	GAGTC	2 cut(s)	749, 1006
Psp6I	CCWGG	1 cut(s)	1399
PspEI	GGTNACC	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	1399
PspN4I	GGNNCC	4 cut(s)	929, 1071, 1245, 1428
PspPI	GGNCC	4 cut(s)	557, 809, 1070, 1323
PstI	CTGCAG	2 cut(s)	391, 886
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	1 cut(s)	927
PvuI	CGATCG	1 cut(s)	1149
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	2 cut(s)	1245, 1343
RsaNI	GTAC	2 cut(s)	1244, 1342
RseI	CAYNNNNRTG	5 cut(s)	435, 552, 669, 731, 1215
SapI	GCTCTTC	1 cut(s)	1407
SaqAI	TTAA	8 cut(s)	195, 243, 291, 366, 465, 582, 1304, 1594
SatI	GCNGC	3 cut(s)	987, 1170, 1418
Sau3AI	GATC	9 cut(s)	130, 178, 719, 739, 898, 916, 927, 1146, 1357
Sau96I	GGNCC	4 cut(s)	557, 809, 1070, 1323
SchI	GAGTC	2 cut(s)	749, 1007
ScrFI	CCNGG	1 cut(s)	1401
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	1177
SfcI	CTRYAG	2 cut(s)	387, 882
Sfr274I	CTCGAG	1 cut(s)	1094
SinI	GGWCC	2 cut(s)	1070, 1323
SlaI	CTCGAG	1 cut(s)	1094
SmiMI	CAYNNNNRTG	5 cut(s)	435, 552, 669, 731, 1215
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
Sse9I	AATT	4 cut(s)	39, 1088, 1137, 1384
SsiI	CCGC	5 cut(s)	35, 165, 261, 330, 1282
SspMI	CTAG	3 cut(s)	66, 1266, 1314
StyD4I	CCNGG	1 cut(s)	1399
TaaI	ACNGT	3 cut(s)	22, 153, 1323
TaiI	ACGT	3 cut(s)	465, 1347, 1567
TaqI	TCGA	2 cut(s)	1095, 1149
TasI	AATT	4 cut(s)	39, 1088, 1137, 1384
TfiI	GAWTC	4 cut(s)	765, 875, 1163, 1406
Tru1I	TTAA	8 cut(s)	195, 243, 291, 366, 465, 582, 1304, 1594
Tru9I	TTAA	8 cut(s)	195, 243, 291, 366, 465, 582, 1304, 1594
TscAI	CASTG	2 cut(s)	396, 1210
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	3 cut(s)	986, 1169, 1417
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	2 cut(s)	702, 1004
TspGWI	ACGGA	3 cut(s)	887, 928, 1562
TspRI	CASTG	2 cut(s)	396, 1210
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	2 cut(s)	1070, 1323
XapI	RAATTY	1 cut(s)	1384
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XhoI	CTCGAG	1 cut(s)	1094
XmnI	GAANNNNTTC	3 cut(s)	354, 453, 571
XspI	CTAG	3 cut(s)	66, 1266, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.