Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502665.1

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Forward (+)

1344 .. 2681

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502665.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggacttggaacatggcaggactagcaagcttccagacattgttattgaggagattacacagccggaaacacctgtaagatttcctgatcggagtgtggagattaaacagtcggaaacaaccggaaaagttcctgatcggagtggggaaattaagcagtcggaaacacctctaagagttcctgatgggagtggagagattaagcagtcggaaactcccgcaaaagttcctgatgggagtggggaagaagttcctgatcggagtggggagattaagaagtcggaaactcctgcaaaagttcctgatgggagcggggagagtaagcagtcggaaacacttccaaactttaatgatgggaggccatctcctgtagtgccgtccaaagttgtagaggctactgctaagggaggtcatcggcgtgccccatcggaaacacttccagacgttaatgatgggaatggaggcagtaagcacccgtcctctccttcaccctcatccaaagttgtagaggctactgctaagcgaggtcattggcgtggcccatcaggaacactttcaaaagttaatgatgggagtggaggcagtaagcactcgtcctctcctccaatttcatccaaagttgcagaggctactgctaagggaggtcatcagcgtgtcccatccgataagctattgtctttcacctctacatcttcatcgggatcagacacatcaatggatgatctgttccaagtggactcaaatagattctctacttcaacacatattccccccctccctaaagattatggcccaaactctccatatcgcccatcaacatctcgtgcgtcaaatgtcaccaatgggttaccaacggaatcccctgcagtccaaatgatggatcggtatggaggatatgatccttacaggatcccatcttccgtgtttgatacaagtaatgtatccaacaaagaaatggaatggagcgctgcttccaatgagtcattatttagtcttcatttaggcaacagcagtttttccagagaccatatacttatgttgagtgatttgggtccaaccaaatcaagtgaattgctcgagattagtccacgcactccacctccggtaattactacgatcgaagaggggagagaatcagcagctgaagaagtggaagatgcgaacatcaaggacactgaacatacaagtgctgaaaatcatagtgaggggagggtaccaccagcccctaaatcccctagccttgcccactcccgcctttccgatgggagtggattaagtggaactagcacacggtcctttgccttcccaatgtacgtctatatatatgatctaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

445

Amino Acids

47.54

Weight (kDa)

5.48

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1213
AccB1I	GGYRCC	1 cut(s)	1213
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	312
AciI	CCGC	3 cut(s)	219, 312, 1252
AclWI	GGATC	5 cut(s)	709, 888, 893, 904, 917
AcuI	CTGAAG	1 cut(s)	1164
AfaI	GTAC	2 cut(s)	1215, 1313
AfeI	AGCGCT	1 cut(s)	967
AfiI	CCNNNNNNNGG	1 cut(s)	877
AgsI	TTSAA	2 cut(s)	558, 759
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	3 cut(s)	31, 670, 1142
AluI	AGCT	3 cut(s)	31, 670, 1142
Alw26I	GTCTC	1 cut(s)	1017
AlwI	GGATC	5 cut(s)	709, 888, 893, 904, 917
AlwNI	CAGNNNCTG	1 cut(s)	1142
Ama87I	CYCGRG	1 cut(s)	1076
Aor51HI	AGCGCT	1 cut(s)	967
AoxI	GGCC	3 cut(s)	359, 538, 790
ApeKI	GCWGC	2 cut(s)	968, 1139
Asp700I	GAANNNNTTC	4 cut(s)	249, 336, 435, 553
Asp718I	GGTACC	1 cut(s)	1213
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	4 cut(s)	539, 791, 1052, 1293
AsuHPI	GGTGA	3 cut(s)	480, 673, 829
AvaI	CYCGRG	1 cut(s)	1076
AvaII	GGWCC	2 cut(s)	1052, 1293
BaeGI	GKGCMC	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	909
BanI	GGYRCC	1 cut(s)	1213
BauI	CACGAG	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	986
BbvI	GCAGC	2 cut(s)	955, 1151
BceAI	ACGGC	1 cut(s)	361
BciVI	GTATCC	1 cut(s)	952
BcoDI	GTCTC	1 cut(s)	1017
BfaI	CTAG	3 cut(s)	24, 1236, 1284
BfmI	CTRYAG	2 cut(s)	369, 864
BfoI	RGCGCY	1 cut(s)	969
BfuI	GTATCC	1 cut(s)	952
BisI	GCNGC	2 cut(s)	969, 1140
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	2 cut(s)	970, 1141
Bme18I	GGWCC	2 cut(s)	1052, 1293
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	4 cut(s)	539, 791, 1052, 1293
BmiI	GGNNCC	3 cut(s)	911, 1053, 1215
BmsI	GCATC	1 cut(s)	1147
BpiI	GAAGAC	1 cut(s)	986
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu10I	CCTNAGC	2 cut(s)	402, 636
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	1017
BsaWI	WCCGGW	2 cut(s)	122, 1102
BsaXI	ACNNNNNCTCC	2 cut(s)	1084, 1114
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
BseGI	GGATG	4 cut(s)	494, 611, 659, 724
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseRI	GAGGAG	2 cut(s)	65, 591
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	955, 1151
Bsh1285I	CGRYCG	1 cut(s)	1119
BshFI	GGCC	3 cut(s)	361, 540, 792
BshNI	GGYRCC	1 cut(s)	1213
BsiEI	CGRYCG	1 cut(s)	1119
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	3 cut(s)	65, 123, 1103
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	1 cut(s)	1017
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	361, 540, 792
Bso31I	GGTCTC	1 cut(s)	1017
BsoBI	CYCGRG	1 cut(s)	1076
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	3 cut(s)	219, 312, 1252
BspANI	GGCC	3 cut(s)	361, 540, 792
BspLI	GGNNCC	3 cut(s)	911, 1053, 1215
BspMAI	CTGCAG	1 cut(s)	868
BspPI	GGATC	5 cut(s)	709, 888, 893, 904, 917
BspT107I	GGYRCC	1 cut(s)	1213
BspTNI	GGTCTC	1 cut(s)	1017
BsrBI	CCGCTC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	111, 1293
Bst6I	CTCTTC	1 cut(s)	1116
BstC8I	GCNNGC	2 cut(s)	29, 420
BstDEI	CTNAG	5 cut(s)	173, 402, 519, 636, 1331
BstEII	GGTNACC	1 cut(s)	846
BstF5I	GGATG	4 cut(s)	494, 611, 659, 724
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	968
BstMAI	GTCTC	1 cut(s)	1017
BstMCI	CGRYCG	1 cut(s)	1119
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	846
BstSFI	CTRYAG	2 cut(s)	369, 864
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	955, 1151
BstV2I	GAAGAC	1 cut(s)	986
BstX2I	RGATCY	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	909
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	3 cut(s)	361, 540, 792
BtsCI	GGATG	4 cut(s)	494, 611, 659, 724
BtsIMutI	CAGTG	1 cut(s)	1173
Cac8I	GCNNGC	2 cut(s)	29, 420
CaiI	CAGNNNCTG	1 cut(s)	1142
CfoI	GCGC	1 cut(s)	968
Cfr13I	GGNCC	4 cut(s)	539, 791, 1052, 1293
CseI	GACGC	1 cut(s)	816
Csp6I	GTAC	2 cut(s)	1214, 1312
CviAII	CATG	1 cut(s)	14
CviQI	GTAC	2 cut(s)	1214, 1312
DdeI	CTNAG	5 cut(s)	173, 402, 519, 636, 1331
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Eco31I	GGTCTC	1 cut(s)	1017
Eco47I	GGWCC	2 cut(s)	1052, 1293
Eco47III	AGCGCT	1 cut(s)	967
Eco57I	CTGAAG	1 cut(s)	1164
Eco88I	CYCGRG	1 cut(s)	1076
Eco91I	GGTNACC	1 cut(s)	846
EcoO65I	GGTNACC	1 cut(s)	846
FaeI	CATG	1 cut(s)	17
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	1 cut(s)	13
FauI	CCCGC	3 cut(s)	226, 305, 1259
Fnu4HI	GCNGC	2 cut(s)	969, 1140
FokI	GGATG	4 cut(s)	481, 598, 646, 731
Fsp4HI	GCNGC	2 cut(s)	969, 1140
FspBI	CTAG	3 cut(s)	24, 1236, 1284
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	2 cut(s)	969, 1140
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	361, 540, 792
HapII	CCGG	3 cut(s)	65, 123, 1103
HgaI	GACGC	1 cut(s)	816
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	5 cut(s)	737, 747, 857, 980, 1133
HpaII	CCGG	3 cut(s)	65, 123, 1103
HphI	GGTGA	3 cut(s)	480, 673, 829
Hpy166II	GTNNAC	2 cut(s)	736, 1088
Hpy8I	GTNNAC	2 cut(s)	736, 1088
HpyAV	CCTTC	2 cut(s)	495, 1312
HpyCH4III	ACNGT	2 cut(s)	111, 1293
HpyCH4IV	ACGT	2 cut(s)	444, 1314
HpyCH4V	TGCA	3 cut(s)	293, 623, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	5 cut(s)	173, 402, 519, 636, 1331
HpySE526I	ACGT	2 cut(s)	444, 1314
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	966
KpnI	GGTACC	1 cut(s)	1217
LmnI	GCTCC	2 cut(s)	309, 963
Lsp1109I	GCAGC	2 cut(s)	955, 1151
LweI	GCATC	1 cut(s)	1147
MaeI	CTAG	3 cut(s)	24, 1236, 1284
MaeII	ACGT	2 cut(s)	444, 1314
MaeIII	GTNAC	2 cut(s)	835, 846
MbiI	CCGCTC	1 cut(s)	312
MboII	GAAGA	7 cut(s)	257, 684, 909, 986, 1133, 1157, 1166
MflI	RGATCY	1 cut(s)	909
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	4 cut(s)	150, 606, 1070, 1107
MlyI	GAGTC	2 cut(s)	731, 989
MmeI	TCCRAC	7 cut(s)	93, 141, 189, 261, 309, 969, 1079
MroXI	GAANNNNTTC	4 cut(s)	249, 336, 435, 553
MseI	TTAA	8 cut(s)	105, 153, 201, 273, 348, 447, 564, 1274
MslI	CAYNNNNRTG	5 cut(s)	417, 534, 651, 713, 1185
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	3 cut(s)	65, 123, 1103
MwoI	GCNNNNNNNGC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	911, 1053, 1215
NmuCI	GTSAC	1 cut(s)	835
PaeR7I	CTCGAG	1 cut(s)	1076
PdmI	GAANNNNTTC	4 cut(s)	249, 336, 435, 553
PfeI	GAWTC	3 cut(s)	747, 857, 1133
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	2 cut(s)	970, 1141
Ple19I	CGATCG	1 cut(s)	1119
PleI	GAGTC	2 cut(s)	731, 988
PpsI	GAGTC	2 cut(s)	731, 988
PspEI	GGTNACC	1 cut(s)	846
PspN4I	GGNNCC	3 cut(s)	911, 1053, 1215
PspPI	GGNCC	4 cut(s)	539, 791, 1052, 1293
PstI	CTGCAG	1 cut(s)	868
PstNI	CAGNNNCTG	1 cut(s)	1142
PsuI	RGATCY	1 cut(s)	909
PvuI	CGATCG	1 cut(s)	1119
PvuII	CAGCTG	1 cut(s)	1142
RsaI	GTAC	2 cut(s)	1215, 1313
RsaNI	GTAC	2 cut(s)	1214, 1312
RseI	CAYNNNNRTG	5 cut(s)	417, 534, 651, 713, 1185
SaqAI	TTAA	8 cut(s)	105, 153, 201, 273, 348, 447, 564, 1274
SatI	GCNGC	2 cut(s)	969, 1140
Sau96I	GGNCC	4 cut(s)	539, 791, 1052, 1293
SchI	GAGTC	2 cut(s)	731, 989
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	1147
SfcI	CTRYAG	2 cut(s)	369, 864
Sfr274I	CTCGAG	1 cut(s)	1076
SinI	GGWCC	2 cut(s)	1052, 1293
SlaI	CTCGAG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	5 cut(s)	417, 534, 651, 713, 1185
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
Sse9I	AATT	4 cut(s)	150, 606, 1070, 1107
SsiI	CCGC	3 cut(s)	219, 312, 1252
SspMI	CTAG	3 cut(s)	24, 1236, 1284
TaaI	ACNGT	2 cut(s)	111, 1293
TaiI	ACGT	2 cut(s)	447, 1317
TaqI	TCGA	2 cut(s)	1077, 1119
TasI	AATT	4 cut(s)	150, 606, 1070, 1107
TfiI	GAWTC	3 cut(s)	747, 857, 1133
Tru1I	TTAA	8 cut(s)	105, 153, 201, 273, 348, 447, 564, 1274
Tru9I	TTAA	8 cut(s)	105, 153, 201, 273, 348, 447, 564, 1274
TscAI	CASTG	1 cut(s)	1180
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	2 cut(s)	968, 1139
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	3 cut(s)	600, 684, 986
TspGWI	ACGGA	2 cut(s)	869, 910
TspRI	CASTG	1 cut(s)	1180
Van91I	CCANNNNNTGG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	1052, 1293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XhoI	CTCGAG	1 cut(s)	1076
XmnI	GAANNNNTTC	4 cut(s)	249, 336, 435, 553
XspI	CTAG	3 cut(s)	24, 1236, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.