Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

4353723 .. 4356118

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1062500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATTCAGATGATAAGCAATGCAGTTATGGACTTGGAACCCGGAAGCAGCAGAAATAGTAAGCGTTCGGAAAGAGTTGTTGATGGAAGTGGAGGCAGTAAGCGTTCGGAAAGACCAAAGGTTCGTGATGGGAGTGATGACAGTAGCCATTTAACAAGACGTCCAGAGGCCACTGCTAATGAAGGTGGTCGTGTCCCGACCAGAAAGCTAGTCTCCATATCCTCTTTGTCATCTTTGGCATCAGACTCGTCATTGGAAGATCTCTTCCAAGTGGATACAAACAGAACTACCACTTCAACACATGCTTCTTCTCTCCCTCAACATCATGACTCTAGCTCTGTAGGTCCTGCATCAACGTCCCGAGCTTCTGATGTCACCCATGGGTCCATGGTGCCCGGTTTGTCACCAACAGAATCCCCTTCAATCCAAATGATGGATCGGTGTGGAGGAGGATATGATCCTTACAGGATCCCGTCTTCTGTGTTTTCAAGAAGTAAATCCAACAAAGAATTGGAATGGAGTGTTGCATCAAATGAGTCGCTTTTTAGCATTCATTTAGGAAACAATAGCTTTTCAAGAGACCACATACTTTTGCTCGGTGATTTGGTTAAGTCTGGGGAACTGAACAAATCAGGCGAGTTGTTTGCACTCAATCCGGCCCCTCATGTTCCAGTGGTAGAAATTGAAAGCGATAGGATTGAAGAAGTAAGGATTGAAGAAGTGAAGATTGAAGAAGTGAGGATTGAAGAAGTGAGGGAATCTGGAGTTGGAGTGGCAGATGAGACCATTAAGAACACTGCAAGAGCAAATGCTGAAGATCATAGCGAGGGAAGGGTGCCTGCACCAACTGGACCCGTAAAATCCCCTACCCTCTCTCGCCGTTCTGATGCGAGTGGAACTAGCACACGCTCTTTTGCCTTCCCAATATTGTCAGATGGGATGACAGATAGGATGAAAAGTTCCGTGAAGGTTACACAATTTGCCGAAGAGCAGTGCCTGGAGCCGGAGCCGCAGCGGCCGCCACCACCAGTCCTCTTACCGCCTAAAAAAGTGACCAAATCAAAAGCCTCCTATTGGCTTTGTTGCTTTTCTTGGTGCAAGTGGGGTTGTTCTTGTCGCCGGCGTCGATGTCGATGTTTTTCTTGTTGTTGCTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.15

Weight (kDa)

7.09

Isoelectric Point (pI)

67.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	163
AccB1I	GGYRCC	2 cut(s)	391, 835
AccB7I	CCANNNNNTGG	1 cut(s)	433
AciI	CCGC	4 cut(s)	1010, 1015, 1019, 1040
AclWI	GGATC	4 cut(s)	444, 452, 463, 476
AcoI	YGGCCR	1 cut(s)	1016
AcuI	CTGAAG	1 cut(s)	834
AcyI	GRCGYC	2 cut(s)	160, 1123
AfiI	CCNNNNNNNGG	3 cut(s)	433, 1003, 1074
AgsI	TTSAA	9 cut(s)	297, 423, 489, 576, 686, 701, 716, 731, 746
AjnI	CCWGG	1 cut(s)	996
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	943, 975
AluBI	AGCT	4 cut(s)	208, 336, 365, 570
AluI	AGCT	4 cut(s)	208, 336, 365, 570
Alw26I	GTCTC	3 cut(s)	217, 573, 776
AlwI	GGATC	4 cut(s)	444, 452, 463, 476
AlwNI	CAGNNNCTG	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	3 cut(s)	168, 657, 1016
ApeKI	GCWGC	2 cut(s)	48, 1012
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspS9I	GGNCC	4 cut(s)	344, 384, 658, 851
AsuC2I	CCSGG	2 cut(s)	42, 396
AsuHPI	GGTGA	3 cut(s)	367, 396, 611
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	3 cut(s)	344, 384, 851
BaeGI	GKGCMC	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	2 cut(s)	391, 835
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	60, 1024
BccI	CCATC	4 cut(s)	77, 122, 427, 929
BceAI	ACGGC	1 cut(s)	864
BcgI	CGANNNNNNTGC	4 cut(s)	228, 262, 626, 660
BciT130I	CCWGG	1 cut(s)	998
BciVI	GTATCC	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	42, 396
BcoDI	GTCTC	3 cut(s)	217, 573, 776
BfaI	CTAG	3 cut(s)	209, 333, 900
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	1015
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	5 cut(s)	49, 1010, 1013, 1016, 1019
BlsI	GCNGC	5 cut(s)	50, 1011, 1014, 1017, 1020
Bme1390I	CCNGG	3 cut(s)	42, 396, 998
Bme18I	GGWCC	3 cut(s)	344, 384, 851
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	4 cut(s)	344, 384, 658, 851
BmiI	GGNNCC	9 cut(s)	39, 385, 393, 470, 660, 837, 853, 1002, 1008
BmrFI	CCNGG	3 cut(s)	42, 396, 998
BmsI	GCATC	4 cut(s)	248, 359, 536, 877
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	783, 1019
BpuMI	CCSGG	2 cut(s)	42, 396
BsaHI	GRCGYC	2 cut(s)	160, 1123
BsaI	GGTCTC	2 cut(s)	573, 776
BsaJI	CCNNGG	2 cut(s)	379, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 1003, 1074
Bse118I	RCCGGY	1 cut(s)	1119
Bse1I	ACTGG	3 cut(s)	671, 853, 1028
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	998
BseDI	CCNNGG	2 cut(s)	379, 387
BseGI	GGATG	2 cut(s)	945, 957
BseLI	CCNNNNNNNGG	3 cut(s)	433, 1003, 1074
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	3 cut(s)	671, 853, 1028
BseRI	GAGGAG	1 cut(s)	462
BseSI	GKGCMC	1 cut(s)	396
BseX3I	CGGCCG	1 cut(s)	1016
BseXI	GCAGC	2 cut(s)	60, 1024
BsgI	GTGCAG	1 cut(s)	825
Bsh1285I	CGRYCG	1 cut(s)	1019
BshFI	GGCC	3 cut(s)	170, 659, 1018
BshNI	GGYRCC	2 cut(s)	391, 835
BsiEI	CGRYCG	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	5 cut(s)	42, 396, 656, 1004, 1120
BslFI	GGGAC	2 cut(s)	179, 343
BslI	CCNNNNNNNGG	3 cut(s)	433, 1003, 1074
BsmAI	GTCTC	3 cut(s)	217, 573, 776
BsmFI	GGGAC	2 cut(s)	179, 343
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	170, 659, 1018
Bso31I	GGTCTC	2 cut(s)	573, 776
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	259, 436, 457, 468, 817
Bsp19I	CCATGG	2 cut(s)	379, 387
BspACI	CCGC	4 cut(s)	1010, 1015, 1019, 1040
BspANI	GGCC	3 cut(s)	170, 659, 1018
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	9 cut(s)	39, 385, 393, 470, 660, 837, 853, 1002, 1008
BspPI	GGATC	4 cut(s)	444, 452, 463, 476
BspQI	GCTCTTC	1 cut(s)	981
BspT107I	GGYRCC	2 cut(s)	391, 835
BspTNI	GGTCTC	2 cut(s)	573, 776
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	1119
BsrI	ACTGG	3 cut(s)	671, 853, 1028
BssAI	RCCGGY	1 cut(s)	1119
BssECI	CCNNGG	2 cut(s)	379, 387
BssMI	GATC	5 cut(s)	259, 436, 457, 468, 817
BssNI	GRCGYC	2 cut(s)	160, 1123
BssT1I	CCWWGG	2 cut(s)	379, 387
Bst2UI	CCWGG	1 cut(s)	998
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	269, 981
BstACI	GRCGYC	2 cut(s)	160, 1123
BstC8I	GCNNGC	2 cut(s)	840, 1121
BstDSI	CCRYGG	2 cut(s)	379, 387
BstF5I	GGATG	2 cut(s)	945, 957
BstKTI	GATC	5 cut(s)	262, 439, 460, 471, 820
BstMAI	GTCTC	3 cut(s)	217, 573, 776
BstMBI	GATC	5 cut(s)	259, 436, 457, 468, 817
BstMCI	CGRYCG	1 cut(s)	1019
BstMWI	GCNNNNNNNGC	3 cut(s)	1009, 1015, 1018
BstNI	CCWGG	1 cut(s)	998
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	40, 394, 996
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	60, 1024
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	2 cut(s)	259, 468
BstYI	RGATCY	2 cut(s)	259, 468
BstZI	CGGCCG	1 cut(s)	1016
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	170, 659, 1018
BtgI	CCRYGG	2 cut(s)	379, 387
BtsCI	GGATG	2 cut(s)	945, 957
BtsI	GCAGTG	3 cut(s)	171, 795, 998
BtsIMutI	CAGTG	4 cut(s)	171, 678, 795, 998
Cac8I	GCNNGC	2 cut(s)	840, 1121
CaiI	CAGNNNCTG	1 cut(s)	997
CciI	TCATGA	1 cut(s)	325
CciNI	GCGGCCGC	1 cut(s)	1016
Cfr10I	RCCGGY	1 cut(s)	1119
Cfr13I	GGNCC	4 cut(s)	344, 384, 658, 851
CseI	GACGC	1 cut(s)	1112
CviAII	CATG	5 cut(s)	302, 326, 380, 388, 665
DpnI	GATC	5 cut(s)	261, 438, 459, 470, 819
DpnII	GATC	5 cut(s)	259, 436, 457, 468, 817
EaeI	YGGCCR	1 cut(s)	1016
EagI	CGGCCG	1 cut(s)	1016
Eam1104I	CTCTTC	2 cut(s)	269, 981
EarI	CTCTTC	2 cut(s)	269, 981
EclXI	CGGCCG	1 cut(s)	1016
Eco130I	CCWWGG	2 cut(s)	379, 387
Eco31I	GGTCTC	2 cut(s)	573, 776
Eco47I	GGWCC	3 cut(s)	344, 384, 851
Eco52I	CGGCCG	1 cut(s)	1016
Eco57I	CTGAAG	1 cut(s)	834
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	996
EcoT14I	CCWWGG	2 cut(s)	379, 387
ErhI	CCWWGG	2 cut(s)	379, 387
FaeI	CATG	5 cut(s)	305, 329, 383, 391, 668
FaqI	GGGAC	2 cut(s)	179, 343
FatI	CATG	5 cut(s)	301, 325, 379, 387, 664
Fnu4HI	GCNGC	5 cut(s)	49, 1010, 1013, 1016, 1019
FokI	GGATG	2 cut(s)	952, 964
Fsp4HI	GCNGC	5 cut(s)	49, 1010, 1013, 1016, 1019
FspBI	CTAG	3 cut(s)	209, 333, 900
GluI	GCNGC	5 cut(s)	49, 1010, 1013, 1016, 1019
GsuI	CTGGAG	2 cut(s)	783, 1019
HaeIII	GGCC	3 cut(s)	170, 659, 1018
HapII	CCGG	5 cut(s)	42, 396, 656, 1004, 1120
HgaI	GACGC	1 cut(s)	1112
Hin1I	GRCGYC	2 cut(s)	160, 1123
Hin1II	CATG	5 cut(s)	305, 329, 383, 391, 668
HinfI	GANTC	6 cut(s)	4, 245, 329, 413, 536, 758
HpaII	CCGG	5 cut(s)	42, 396, 656, 1004, 1120
HphI	GGTGA	3 cut(s)	367, 396, 611
Hpy188I	TCNGA	7 cut(s)	9, 70, 109, 244, 370, 886, 934
Hpy188III	TCNNGA	8 cut(s)	125, 164, 196, 326, 360, 489, 576, 762
Hpy99I	CGWCG	1 cut(s)	1128
HpyAV	CCTTC	5 cut(s)	176, 429, 825, 928, 961
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	160, 356
HpyCH4V	TGCA	7 cut(s)	23, 350, 527, 647, 800, 842, 1098
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1009, 1015, 1018
HpySE526I	ACGT	2 cut(s)	160, 356
Hsp92I	GRCGYC	2 cut(s)	160, 1123
Hsp92II	CATG	5 cut(s)	305, 329, 383, 391, 668
KroI	GCCGGC	1 cut(s)	1119
KroNI	GCCGGC	1 cut(s)	1121
Kzo9I	GATC	5 cut(s)	259, 436, 457, 468, 817
LguI	GCTCTTC	1 cut(s)	981
LmnI	GCTCC	2 cut(s)	1000, 1006
Lsp1109I	GCAGC	2 cut(s)	60, 1024
LweI	GCATC	4 cut(s)	248, 359, 536, 877
MaeI	CTAG	3 cut(s)	209, 333, 900
MaeII	ACGT	2 cut(s)	160, 356
MaeIII	GTNAC	4 cut(s)	373, 402, 970, 1051
MalI	GATC	5 cut(s)	261, 438, 459, 470, 819
MboI	GATC	5 cut(s)	259, 436, 457, 468, 817
MflI	RGATCY	2 cut(s)	259, 468
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	3 cut(s)	509, 681, 977
MlyI	GAGTC	3 cut(s)	239, 323, 545
MmeI	TCCRAC	2 cut(s)	525, 748
MreI	CGCCGGCG	1 cut(s)	1119
MroNI	GCCGGC	1 cut(s)	1119
MseI	TTAA	3 cut(s)	152, 609, 789
MspA1I	CMGCKG	1 cut(s)	1015
MspI	CCGG	5 cut(s)	42, 396, 656, 1004, 1120
MspR9I	CCNGG	3 cut(s)	42, 396, 998
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	998
MwoI	GCNNNNNNNGC	3 cut(s)	1009, 1015, 1018
NaeI	GCCGGC	1 cut(s)	1121
NciI	CCSGG	2 cut(s)	42, 396
NcoI	CCATGG	2 cut(s)	379, 387
NdeII	GATC	5 cut(s)	259, 436, 457, 468, 817
NgoMIV	GCCGGC	1 cut(s)	1119
NlaIII	CATG	5 cut(s)	305, 329, 383, 391, 668
NlaIV	GGNNCC	9 cut(s)	39, 385, 393, 470, 660, 837, 853, 1002, 1008
NmuCI	GTSAC	3 cut(s)	373, 402, 1051
NotI	GCGGCCGC	1 cut(s)	1016
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
PctI	GAATGC	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	1121
PfeI	GAWTC	3 cut(s)	4, 413, 758
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	50, 1011, 1014, 1017, 1020
PleI	GAGTC	3 cut(s)	239, 323, 544
PpsI	GAGTC	3 cut(s)	239, 323, 544
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	996
PspGI	CCWGG	1 cut(s)	996
PspN4I	GGNNCC	9 cut(s)	39, 385, 393, 470, 660, 837, 853, 1002, 1008
PspPI	GGNCC	4 cut(s)	344, 384, 658, 851
PspPPI	RGGWCCY	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	997
PsuI	RGATCY	2 cut(s)	259, 468
SapI	GCTCTTC	1 cut(s)	981
SaqAI	TTAA	3 cut(s)	152, 609, 789
SatI	GCNGC	5 cut(s)	49, 1010, 1013, 1016, 1019
Sau3AI	GATC	5 cut(s)	259, 436, 457, 468, 817
Sau96I	GGNCC	4 cut(s)	344, 384, 658, 851
SchI	GAGTC	3 cut(s)	239, 323, 545
ScrFI	CCNGG	3 cut(s)	42, 396, 998
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	4 cut(s)	248, 359, 536, 877
SfcI	CTRYAG	1 cut(s)	339
SgrAI	CRCCGGYG	1 cut(s)	1119
SinI	GGWCC	3 cut(s)	344, 384, 851
Sse9I	AATT	3 cut(s)	509, 681, 977
SsiI	CCGC	4 cut(s)	1010, 1015, 1019, 1040
SspI	AATATT	1 cut(s)	927
SspMI	CTAG	3 cut(s)	209, 333, 900
StyD4I	CCNGG	3 cut(s)	40, 394, 996
StyI	CCWWGG	2 cut(s)	379, 387
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	163, 359
TaqI	TCGA	2 cut(s)	1126, 1132
TasI	AATT	3 cut(s)	509, 681, 977
TauI	GCSGC	3 cut(s)	1012, 1018, 1021
TfiI	GAWTC	3 cut(s)	4, 413, 758
Tru1I	TTAA	3 cut(s)	152, 609, 789
Tru9I	TTAA	3 cut(s)	152, 609, 789
TscAI	CASTG	4 cut(s)	178, 678, 802, 998
TseFI	GTSAC	3 cut(s)	373, 402, 1051
TseI	GCWGC	2 cut(s)	48, 1012
Tsp45I	GTSAC	3 cut(s)	373, 402, 1051
TspDTI	ATGAA	3 cut(s)	195, 542, 968
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	4 cut(s)	178, 678, 802, 998
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	344, 384, 851
XceI	RCATGY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	3 cut(s)	209, 333, 900
ZraI	GACGTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.