Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

61089793 .. 61091723

Gene Structure 1931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTGTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGTGGAGATTAAACAGTCGGAAACAACCGCAAAAGTTCCTGATCGGAGTGGGGAGATTAAGCAGTCGGAAACACCTCTAAGAGTTCCTGATGGGAGTGGAGAGATTAAGCAGTCGGAAACTCCCGCAAAAGTTCCTGATGGGAGTGGGGAGATTAAGAAGTCGGAAACTCCTGCAAAAGTTCCTGATGGGAGCGGGGAGAGTAAGCAGTCGGAAACACTTCCAAAAGTTAATGATGGGAGGCCATCTCCTGCAGTGCCGTCCAAAGTTGTAGAGGCTACTGCCAAGGGAGGTCATCAGCGTGTCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATGGATGATCTGTTCCAAGTGGACTCAAATAGATTCTCTACTTCAACACATATTCCTCCCCTCCCTAAAGATTATGGCCCAAACTCTCCTTATCGCCCTTCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCAACGGAATCCCCTGCAGTCCAAATGATGGAGCGGTATGGAGGATATGATCCTTACAGGATCCCATCTTCCGTGTTTGATACAAGTAATGTATCCAACAAAGAAATATTGGAATGGAGCGCTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAGCAGTTTTTCCAGAGACCATATACTTATGTTGAGTGATTTGGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCCACCTCCGGTAGTAGAAACAGAAATGAGTAGGATCGAAGAGGGGAGAGAATCAGCAGCTGAAGAAGTGGCAGATGCGAACATCAAGGACACTGAACATGCAAGTGCTGAAAATCATAGTGAGGGGAGGGTACCACCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCATTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGGTCCTTTGCCTTCCCAATTTTGACAGATGGGACGAAAAATTCTCTGAAGCTTCCGGGAGATTCTGAAGAGCAGCGTCCGGAGCCACCACCACCACCAGCCAGCAGGACAAAAAAATCAAAGAAAAAAAAGACCCGTTGGCTTCCTTGCTTTTCTTGTTCTTGGTGCAAGTGGGGCTGTTGTTGTTCTTGTCGTCGGCTTTGTTCTTGTCCACGTTTTTTCCGTCGCTGTTGTTGTTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

46.73

Weight (kDa)

6.35

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	970
AccB1I	GGYRCC	1 cut(s)	970
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccBSI	CCGCTC	2 cut(s)	288, 625
AccIII	TCCGGA	1 cut(s)	1126
AciI	CCGC	5 cut(s)	123, 219, 288, 625, 1009
AclWI	GGATC	5 cut(s)	451, 635, 646, 659, 881
AcsI	RAATTY	1 cut(s)	1087
AcuI	CTGAAG	3 cut(s)	921, 1115, 1134
AfaI	GTAC	1 cut(s)	972
AfeI	AGCGCT	1 cut(s)	712
AfiI	CCNNNNNNNGG	1 cut(s)	619
AgsI	TTSAA	2 cut(s)	501, 558
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	31, 412, 899, 1099
AluI	AGCT	4 cut(s)	31, 412, 899, 1099
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	5 cut(s)	451, 635, 646, 659, 881
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	821
Aor13HI	TCCGGA	1 cut(s)	1126
Aor51HI	AGCGCT	1 cut(s)	712
AoxI	GGCC	2 cut(s)	335, 532
ApeKI	GCWGC	3 cut(s)	713, 896, 1120
ApoI	RAATTY	1 cut(s)	1087
Asp700I	GAANNNNTTC	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	970
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	533, 797, 1050
AsuC2I	CCSGG	1 cut(s)	1104
AsuHPI	GGTGA	2 cut(s)	415, 571
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	2 cut(s)	797, 1050
BamHI	GGATCC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	970
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	731
BbvI	GCAGC	3 cut(s)	700, 908, 1132
BceAI	ACGGC	1 cut(s)	337
BciVI	GTATCC	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	1104
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	3 cut(s)	24, 993, 1041
BfmI	CTRYAG	2 cut(s)	345, 606
BfoI	RGCGCY	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	714, 897, 1121
BlsI	GCNGC	3 cut(s)	715, 898, 1122
Bme1390I	CCNGG	1 cut(s)	1104
Bme18I	GGWCC	2 cut(s)	797, 1050
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	3 cut(s)	533, 797, 1050
BmiI	GGNNCC	4 cut(s)	653, 798, 972, 1131
BmrFI	CCNGG	1 cut(s)	1104
BmsI	GCATC	1 cut(s)	904
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpuMI	CCSGG	1 cut(s)	1104
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	2 cut(s)	847, 1126
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	1126
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	401, 466
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	700, 908, 1132
BshFI	GGCC	2 cut(s)	337, 534
BshNI	GGYRCC	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	4 cut(s)	65, 848, 1103, 1127
BslFI	GGGAC	2 cut(s)	383, 1093
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	2 cut(s)	383, 1093
BsnI	GGCC	2 cut(s)	337, 534
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	821
Bsp13I	TCCGGA	1 cut(s)	1126
Bsp143I	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
BspACI	CCGC	5 cut(s)	123, 219, 288, 625, 1009
BspANI	GGCC	2 cut(s)	337, 534
BspEI	TCCGGA	1 cut(s)	1126
BspLI	GGNNCC	4 cut(s)	653, 798, 972, 1131
BspMAI	CTGCAG	2 cut(s)	349, 610
BspPI	GGATC	5 cut(s)	451, 635, 646, 659, 881
BspQI	GCTCTTC	1 cut(s)	1110
BspT107I	GGYRCC	1 cut(s)	970
BspTNI	GGTCTC	1 cut(s)	762
BsrBI	CCGCTC	2 cut(s)	288, 625
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	111, 1050
Bst6I	CTCTTC	2 cut(s)	873, 1110
BstC8I	GCNNGC	2 cut(s)	29, 1150
BstDEI	CTNAG	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	401, 466
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	7 cut(s)	91, 139, 446, 466, 643, 654, 876
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 1129, 1221
BstNSI	RCATGY	1 cut(s)	941
BstPI	GGTNACC	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	1102
BstSFI	CTRYAG	2 cut(s)	345, 606
BstV1I	GCAGC	3 cut(s)	700, 908, 1132
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	337, 534
BtsCI	GGATG	2 cut(s)	401, 466
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 930
Cac8I	GCNNGC	2 cut(s)	29, 1150
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	533, 797, 1050
CseI	GACGC	2 cut(s)	558, 1112
Csp6I	GTAC	1 cut(s)	971
CviAII	CATG	2 cut(s)	14, 938
CviQI	GTAC	1 cut(s)	971
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	7 cut(s)	90, 138, 445, 465, 642, 653, 875
DpnII	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
Eam1104I	CTCTTC	2 cut(s)	873, 1110
EarI	CTCTTC	2 cut(s)	873, 1110
Eco130I	CCWWGG	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	797, 1050
Eco47III	AGCGCT	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	921, 1115, 1134
Eco88I	CYCGRG	1 cut(s)	821
Eco91I	GGTNACC	1 cut(s)	588
EcoO65I	GGTNACC	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	17, 941
FaqI	GGGAC	2 cut(s)	383, 1093
FatI	CATG	2 cut(s)	13, 937
FauI	CCCGC	3 cut(s)	226, 281, 1016
Fnu4HI	GCNGC	3 cut(s)	714, 897, 1121
FokI	GGATG	2 cut(s)	388, 473
Fsp4HI	GCNGC	3 cut(s)	714, 897, 1121
FspBI	CTAG	3 cut(s)	24, 993, 1041
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	714, 897, 1121
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	337, 534
HapII	CCGG	4 cut(s)	65, 848, 1103, 1127
HgaI	GACGC	2 cut(s)	558, 1112
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	2 cut(s)	17, 941
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	2 cut(s)	29, 1097
HinfI	GANTC	6 cut(s)	479, 489, 599, 725, 890, 1109
HpaII	CCGG	4 cut(s)	65, 848, 1103, 1127
HphI	GGTGA	2 cut(s)	415, 571
Hpy166II	GTNNAC	3 cut(s)	478, 833, 1259
Hpy8I	GTNNAC	3 cut(s)	478, 833, 1259
Hpy99I	CGWCG	2 cut(s)	1245, 1275
HpyAV	CCTTC	2 cut(s)	564, 1069
HpyCH4III	ACNGT	2 cut(s)	111, 1050
HpyCH4IV	ACGT	1 cut(s)	1261
HpyCH4V	TGCA	5 cut(s)	269, 347, 608, 941, 1215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 1129, 1221
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	1261
Hsp92II	CATG	2 cut(s)	17, 941
HspAI	GCGC	1 cut(s)	711
Kpn2I	TCCGGA	1 cut(s)	1126
KpnI	GGTACC	1 cut(s)	974
Kzo9I	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
LguI	GCTCTTC	1 cut(s)	1110
LmnI	GCTCC	4 cut(s)	285, 622, 708, 1129
Lsp1109I	GCAGC	3 cut(s)	700, 908, 1132
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	3 cut(s)	24, 993, 1041
MaeII	ACGT	1 cut(s)	1261
MaeIII	GTNAC	2 cut(s)	577, 588
MalI	GATC	7 cut(s)	90, 138, 445, 465, 642, 653, 875
MbiI	CCGCTC	2 cut(s)	288, 625
MboI	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
MboII	GAAGA	6 cut(s)	426, 651, 731, 890, 914, 1127
MflI	RGATCY	1 cut(s)	651
MluCI	AATT	3 cut(s)	815, 1065, 1087
MlyI	GAGTC	2 cut(s)	473, 734
MmeI	TCCRAC	7 cut(s)	93, 141, 189, 237, 285, 711, 824
MroI	TCCGGA	1 cut(s)	1126
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	7 cut(s)	105, 153, 201, 249, 324, 1031, 1291
MslI	CAYNNNNRTG	4 cut(s)	393, 455, 942, 1017
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	4 cut(s)	65, 848, 1103, 1127
MspR9I	CCNGG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	3 cut(s)	24, 1129, 1221
NciI	CCSGG	1 cut(s)	1104
NdeII	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
NlaIII	CATG	2 cut(s)	17, 941
NlaIV	GGNNCC	4 cut(s)	653, 798, 972, 1131
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	941
PaeR7I	CTCGAG	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	1267
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	489, 599, 890, 1109
PflMI	CCANNNNNTGG	1 cut(s)	619
PfoI	TCCNGGA	1 cut(s)	1102
PkrI	GCNGC	3 cut(s)	715, 898, 1122
PleI	GAGTC	2 cut(s)	473, 733
PpsI	GAGTC	2 cut(s)	473, 733
PspEI	GGTNACC	1 cut(s)	588
PspN4I	GGNNCC	4 cut(s)	653, 798, 972, 1131
PspPI	GGNCC	3 cut(s)	533, 797, 1050
PstI	CTGCAG	2 cut(s)	349, 610
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	651
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	972
RsaNI	GTAC	1 cut(s)	971
RseI	CAYNNNNRTG	4 cut(s)	393, 455, 942, 1017
SapI	GCTCTTC	1 cut(s)	1110
SaqAI	TTAA	7 cut(s)	105, 153, 201, 249, 324, 1031, 1291
SatI	GCNGC	3 cut(s)	714, 897, 1121
Sau3AI	GATC	7 cut(s)	88, 136, 443, 463, 640, 651, 873
Sau96I	GGNCC	3 cut(s)	533, 797, 1050
SchI	GAGTC	2 cut(s)	473, 734
ScrFI	CCNGG	1 cut(s)	1104
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	2 cut(s)	345, 606
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	2 cut(s)	797, 1050
SlaI	CTCGAG	1 cut(s)	821
SmiMI	CAYNNNNRTG	4 cut(s)	393, 455, 942, 1017
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	3 cut(s)	815, 1065, 1087
SsiI	CCGC	5 cut(s)	123, 219, 288, 625, 1009
SspI	AATATT	1 cut(s)	699
SspMI	CTAG	3 cut(s)	24, 993, 1041
StyD4I	CCNGG	1 cut(s)	1102
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	111, 1050
TaiI	ACGT	1 cut(s)	1264
TaqI	TCGA	2 cut(s)	822, 876
TasI	AATT	3 cut(s)	815, 1065, 1087
TfiI	GAWTC	4 cut(s)	489, 599, 890, 1109
Tru1I	TTAA	7 cut(s)	105, 153, 201, 249, 324, 1031, 1291
Tru9I	TTAA	7 cut(s)	105, 153, 201, 249, 324, 1031, 1291
TscAI	CASTG	2 cut(s)	354, 937
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	713, 896, 1120
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	426, 731
TspGWI	ACGGA	3 cut(s)	611, 652, 1259
TspRI	CASTG	2 cut(s)	354, 937
Van91I	CCANNNNNTGG	1 cut(s)	619
VpaK11BI	GGWCC	2 cut(s)	797, 1050
XapI	RAATTY	1 cut(s)	1087
XceI	RCATGY	1 cut(s)	941
XhoI	CTCGAG	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	3 cut(s)	24, 993, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.