Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

4350022 .. 4353001

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1060800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATTCAGTCAGAACGAGTTGTTGATGGGAGTGAAGGCAGTAAGCACCCTGAAACACCAAAGGTTGTTGATGGGAGTGATAGCAGTAGCCATTTAACAATACTTCCAGAGGCTACTGCTAATGAAGGTGGTCCTGTCCCAACCAGAAGACTAATCTCTATATCCTCTTTGTCTTCGTTGGCATCAGACTCGTCATTGGAAGATCTATTCCAAGTGGATACAAACAGAATTACAACTTCAACACATACTGCTTCCGTCTCTAAACATGATGACTATAACATTGTAGGTCCCGCATCAACATCCCGAGCTTCTGATGTCACCCATGGGTCCATGGTGCCTGGTTTGTCACCAACAGATTCCCCTTCAATCCAAACTATGGATCGGTGTGGTGGATATGATCCTTACAGGATCCCGACTTCTGTGTTTTCAACAAGTAAATCCAACAAAGAAATGGATTGGAGTGTTGCATCCAATGAGTCATTGTTTAGCATTCATTTAGGCAACAACAGCTTTTCCAGAGACCACACATTTTTTCTCGGTGATTTGGGCAAGTCTGGGGAACTGTACAAATCAGGCGAGTTGTTTTCGCTCAATCCAGCTCTTCCAGTTCCAGCGGTAGAAATTGAAAGTGACAGGATTGAAGAAGTGAGGAAATCTGGAGTTGGAGTGGCAGATGAGACCATCAAGGACATAGCAAGAGCAAATGCTGAAGATCATAGTGAGGGAAGGGTACAACCGCCAACTGTATTTGGAAAATCCCCTAGCCTCTCTCGCCGTTCTGATGGGAGTGGGACTAGCACACGCTCTTTTGCCTTCCCAATATTGACAGATGGGATGAAAAGTTCTGTGAAGGCTACTGAGCCGTGTCTGGAGCAGCCGCCGCCACAACCACCAGTCAGATTATCGCCTAAAAAAGTGACCAAATCAAAAGTCACCTATTGGTTTCGTTGCTTTTCTTGGTTCAAGTGGGGTTGTTCTTGTCACCGGCGTCATTGTTGTTCTTATTGTTGCTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

36.78

Weight (kDa)

6.21

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	5 cut(s)	291, 614, 737, 878, 881
AclWI	GGATC	4 cut(s)	387, 392, 403, 416
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	988
AfaI	GTAC	2 cut(s)	566, 732
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	6 cut(s)	240, 366, 429, 626, 641, 964
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
AluBI	AGCT	3 cut(s)	308, 510, 599
AluI	AGCT	3 cut(s)	308, 510, 599
Alw26I	GTCTC	3 cut(s)	262, 513, 671
AlwI	GGATC	4 cut(s)	387, 392, 403, 416
Ama87I	CYCGRG	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	874
ArsI	GACNNNNNNTTYG	2 cut(s)	915, 947
AspS9I	GGNCC	3 cut(s)	131, 287, 327
AsuHPI	GGTGA	5 cut(s)	310, 339, 551, 925, 974
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	3 cut(s)	131, 287, 327
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	154, 165
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	5 cut(s)	20, 65, 689, 776, 824
BceAI	ACGGC	2 cut(s)	759, 847
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	262, 513, 671
BfaI	CTAG	2 cut(s)	762, 795
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	875, 878, 881
BlsI	GCNGC	3 cut(s)	876, 879, 882
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	3 cut(s)	131, 287, 327
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	3 cut(s)	131, 287, 327
BmiI	GGNNCC	4 cut(s)	289, 328, 336, 410
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	191, 302, 476
BpiI	GAAGAC	2 cut(s)	154, 165
BpmI	CTGGAG	2 cut(s)	678, 890
BsaHI	GRCGYC	1 cut(s)	988
BsaI	GGTCTC	2 cut(s)	513, 671
BsaJI	CCNNGG	2 cut(s)	322, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	984
Bse1I	ACTGG	2 cut(s)	605, 893
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	322, 330
BseGI	GGATG	3 cut(s)	299, 467, 840
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	2 cut(s)	605, 893
BseXI	GCAGC	1 cut(s)	886
BshNI	GGYRCC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	985
BslFI	GGGAC	3 cut(s)	122, 273, 805
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	3 cut(s)	262, 513, 671
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	3 cut(s)	122, 273, 805
BsmI	GAATGC	1 cut(s)	489
Bso31I	GGTCTC	2 cut(s)	513, 671
BsoBI	CYCGRG	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	202, 379, 397, 408, 712
Bsp19I	CCATGG	2 cut(s)	322, 330
BspACI	CCGC	5 cut(s)	291, 614, 737, 878, 881
BspCNI	CTCAG	1 cut(s)	850
BspLI	GGNNCC	4 cut(s)	289, 328, 336, 410
BspPI	GGATC	4 cut(s)	387, 392, 403, 416
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	2 cut(s)	513, 671
BsrFI	RCCGGY	1 cut(s)	984
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	605, 893
BssAI	RCCGGY	1 cut(s)	984
BssECI	CCNNGG	2 cut(s)	322, 330
BssMI	GATC	5 cut(s)	202, 379, 397, 408, 712
BssNI	GRCGYC	1 cut(s)	988
BssT1I	CCWWGG	2 cut(s)	322, 330
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	564, 745
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	988
BstAUI	TGTACA	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	858
BstDSI	CCRYGG	2 cut(s)	322, 330
BstF5I	GGATG	3 cut(s)	299, 467, 840
BstKTI	GATC	5 cut(s)	205, 382, 400, 411, 715
BstMAI	GTCTC	3 cut(s)	262, 513, 671
BstMBI	GATC	5 cut(s)	202, 379, 397, 408, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	507, 771, 880
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	2 cut(s)	154, 165
BstX2I	RGATCY	2 cut(s)	202, 408
BstYI	RGATCY	2 cut(s)	202, 408
BsuI	GTATCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	322, 330
BtsCI	GGATG	3 cut(s)	299, 467, 840
Cfr10I	RCCGGY	1 cut(s)	984
Cfr13I	GGNCC	3 cut(s)	131, 287, 327
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	565, 731
CviAII	CATG	3 cut(s)	266, 323, 331
CviJI	RGCY	9 cut(s)	90, 113, 308, 510, 599, 765, 854, 862, 877
CviKI_1	RGCY	9 cut(s)	90, 113, 308, 510, 599, 765, 854, 862, 877
CviQI	GTAC	2 cut(s)	565, 731
DdeI	CTNAG	1 cut(s)	858
DpnI	GATC	5 cut(s)	204, 381, 399, 410, 714
DpnII	GATC	5 cut(s)	202, 379, 397, 408, 712
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	2 cut(s)	322, 330
Eco31I	GGTCTC	2 cut(s)	513, 671
Eco47I	GGWCC	3 cut(s)	131, 287, 327
Eco57I	CTGAAG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	322, 330
ErhI	CCWWGG	2 cut(s)	322, 330
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	3 cut(s)	269, 326, 334
FaqI	GGGAC	3 cut(s)	122, 273, 805
FatI	CATG	3 cut(s)	265, 322, 330
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	875, 878, 881
FokI	GGATG	3 cut(s)	286, 454, 847
Fsp4HI	GCNGC	3 cut(s)	875, 878, 881
FspBI	CTAG	2 cut(s)	762, 795
GluI	GCNGC	3 cut(s)	875, 878, 881
GsuI	CTGGAG	2 cut(s)	678, 890
HapII	CCGG	1 cut(s)	985
HgaI	GACGC	1 cut(s)	977
Hin1I	GRCGYC	1 cut(s)	988
Hin1II	CATG	3 cut(s)	269, 326, 334
HinfI	GANTC	4 cut(s)	4, 188, 356, 476
HpaII	CCGG	1 cut(s)	985
HphI	GGTGA	5 cut(s)	310, 339, 551, 925, 974
Hpy188I	TCNGA	5 cut(s)	13, 187, 313, 781, 899
Hpy188III	TCNNGA	6 cut(s)	107, 303, 412, 516, 657, 869
HpyAV	CCTTC	6 cut(s)	29, 119, 372, 720, 823, 844
HpyCH4III	ACNGT	2 cut(s)	564, 745
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	507, 771, 880
HpyF3I	CTNAG	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	988
Hsp92II	CATG	3 cut(s)	269, 326, 334
Kzo9I	GATC	5 cut(s)	202, 379, 397, 408, 712
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	3 cut(s)	191, 302, 476
MaeI	CTAG	2 cut(s)	762, 795
MaeIII	GTNAC	6 cut(s)	316, 345, 629, 916, 931, 980
MalI	GATC	5 cut(s)	204, 381, 399, 410, 714
MboI	GATC	5 cut(s)	202, 379, 397, 408, 712
MboII	GAAGA	6 cut(s)	159, 165, 212, 593, 653, 722
MflI	RGATCY	2 cut(s)	202, 408
MluCI	AATT	2 cut(s)	228, 621
MlyI	GAGTC	2 cut(s)	182, 485
MmeI	TCCRAC	2 cut(s)	465, 643
MnlI	CCTC	5 cut(s)	103, 175, 642, 715, 776
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	1 cut(s)	985
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	507, 771, 880
NcoI	CCATGG	2 cut(s)	322, 330
NdeII	GATC	5 cut(s)	202, 379, 397, 408, 712
NlaIII	CATG	3 cut(s)	269, 326, 334
NlaIV	GGNNCC	4 cut(s)	289, 328, 336, 410
NmuCI	GTSAC	6 cut(s)	316, 345, 629, 916, 931, 980
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	4, 356
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	876, 879, 882
PleI	GAGTC	2 cut(s)	182, 484
PpsI	GAGTC	2 cut(s)	182, 484
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	289, 328, 336, 410
PspPI	GGNCC	3 cut(s)	131, 287, 327
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	202, 408
RsaI	GTAC	2 cut(s)	566, 732
RsaNI	GTAC	2 cut(s)	565, 731
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	3 cut(s)	875, 878, 881
Sau3AI	GATC	5 cut(s)	202, 379, 397, 408, 712
Sau96I	GGNCC	3 cut(s)	131, 287, 327
SchI	GAGTC	2 cut(s)	182, 485
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	7 cut(s)	66, 130, 289, 310, 512, 601, 938
SfaNI	GCATC	3 cut(s)	191, 302, 476
SgrAI	CRCCGGYG	1 cut(s)	984
SinI	GGWCC	3 cut(s)	131, 287, 327
Sse9I	AATT	2 cut(s)	228, 621
SsiI	CCGC	5 cut(s)	291, 614, 737, 878, 881
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	2 cut(s)	762, 795
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	322, 330
TaaI	ACNGT	2 cut(s)	564, 745
TasI	AATT	2 cut(s)	228, 621
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	880, 883
TfiI	GAWTC	2 cut(s)	4, 356
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	6 cut(s)	316, 345, 629, 916, 931, 980
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	6 cut(s)	316, 345, 629, 916, 931, 980
TspDTI	ATGAA	3 cut(s)	138, 482, 851
TspGWI	ACGGA	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	131, 287, 327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	762, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.