Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00245

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

162198 .. 164900

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTGTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGTGGAGATTATACAGTCGGAAACAACCGCAAAAGTTCCTGATCGGAGTGGGGAGATTAAGCAGTCGGAAACACCTCTAAGAGTTCCTGATGGGAGTGGAGAGATTAAGCAGTCGGAAACTCCCGCAAAAGTTCCTGATGGGAGTGGGGAGATTAAGAAGTCGGAAACTCCTGCAAAAGTTCCTGATGGGAGCGGGGAGAGTAAGCAGTCGGAAACACTTCCAAAAGTTAATGATGGGAGGCCATCTCCTGCAGTGCCGTCCAAAGTTGTAGAGGCTACTGCTAAGGGAGGTCATCGGCGTGCCCCATCGGAAACACTTCCAGACGTTAATGATGGGAATGGAGGCAGTAAGCACCCGTCCTCTCCTTCACCCTCATCCAAAGTTGTAGAGGCTACTGCTAAGCGAGGTCATTGGCGTGGCCCATCAGGAACACTTTCAAAAGTTAATGATGGGAGTGGAGGCAGTAAGCACTCGTCCTCTCCTCCAATCTCATCCAAAGTTGCAGAGGCTACTGCTAAGGGAGGTCATCAGCATGTCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATGGATGATCTGTTCCAAGTGGACTCAAATAGATTCTCTACTTCAACACATATTCCTCCCCTCCCTAAAGATTATGGCCCAAACTCTCCTTATCGCCCATCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCGACGGAATCCCCTGCAGTCCAAATGATGGATCGGTATGGAGGATATGATCCTTACAGGATCCCATCTTCCGTGTTTGATACAAGTAATGTATCCAACAAAGAAATGGAATGGAGCGCTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAGCAGTTTTTCCAGAGACCATATACTTATGTTGAGTGATTTGGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCCACCTCCGGTAGTAGAAACAGAAATTACTACGATCGAAGAGGGGAGAGAATCAGCAGCTGAAGAAGTGGAAGATGCGAACATCAAGGACACTGAACATACAAGTGCTGAAAATCATAGTGAGGGGAGGGTACCACCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCGTTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGGTCCTTTGCCTTCCCAATGTACGTCTATATATATGATCTAAGTTTGACAGATGGGACGAAAAATTCTCTGAAGCTTCCAGGAGATTCTGAAGAGCAGCGTCCGGAGCCACCACCACCACCACCACCAGCCAGCAGGACAAAAAAATCAAAGAAAAAAAAGACCCGTTGGCTTCCTTGCGTTTCTTGTTCTTGGTGCAAGTGGAGCTGTTGTTGTTCTTGTCGTCGGCTTTGTTCTTGTCCACGTTTTTTCCGTCGCTGTTGTTGTTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

517

Amino Acids

55.64

Weight (kDa)

6.69

Isoelectric Point (pI)

68.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1201
AccB1I	GGYRCC	1 cut(s)	1201
AccB7I	CCANNNNNTGG	1 cut(s)	853
AccBSI	CCGCTC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	4 cut(s)	123, 219, 288, 1240
AclWI	GGATC	5 cut(s)	685, 864, 869, 880, 893
AcsI	RAATTY	1 cut(s)	1342
AcuI	CTGAAG	3 cut(s)	1152, 1370, 1389
AfaI	GTAC	2 cut(s)	1203, 1301
AfeI	AGCGCT	1 cut(s)	943
AfiI	CCNNNNNNNGG	1 cut(s)	853
AgsI	TTSAA	2 cut(s)	534, 735
AjnI	CCWGG	1 cut(s)	1357
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	5 cut(s)	31, 646, 1130, 1354, 1485
AluI	AGCT	5 cut(s)	31, 646, 1130, 1354, 1485
Alw26I	GTCTC	1 cut(s)	993
AlwI	GGATC	5 cut(s)	685, 864, 869, 880, 893
AlwNI	CAGNNNCTG	1 cut(s)	1130
Ama87I	CYCGRG	1 cut(s)	1052
Aor13HI	TCCGGA	1 cut(s)	1381
Aor51HI	AGCGCT	1 cut(s)	943
AoxI	GGCC	3 cut(s)	335, 514, 766
ApeKI	GCWGC	3 cut(s)	944, 1127, 1375
ApoI	RAATTY	1 cut(s)	1342
Asp700I	GAANNNNTTC	3 cut(s)	312, 411, 529
Asp718I	GGTACC	1 cut(s)	1201
AspLEI	GCGC	1 cut(s)	944
AspS9I	GGNCC	4 cut(s)	515, 767, 1028, 1281
AsuHPI	GGTGA	3 cut(s)	456, 649, 805
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	2 cut(s)	1028, 1281
BaeGI	GKGCMC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	1201
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	962
BbvI	GCAGC	3 cut(s)	931, 1139, 1387
BceAI	ACGGC	2 cut(s)	337, 1227
BciT130I	CCWGG	1 cut(s)	1359
BciVI	GTATCC	1 cut(s)	928
BcoDI	GTCTC	1 cut(s)	993
BfaI	CTAG	3 cut(s)	24, 1224, 1272
BfmI	CTRYAG	2 cut(s)	345, 840
BfoI	RGCGCY	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	928
BisI	GCNGC	3 cut(s)	945, 1128, 1376
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	3 cut(s)	946, 1129, 1377
Bme1390I	CCNGG	1 cut(s)	1359
Bme18I	GGWCC	2 cut(s)	1028, 1281
BmeT110I	CYCGRG	1 cut(s)	1052
BmgT120I	GGNCC	4 cut(s)	515, 767, 1028, 1281
BmiI	GGNNCC	4 cut(s)	887, 1029, 1203, 1386
BmrFI	CCNGG	1 cut(s)	1359
BmsI	GCATC	1 cut(s)	1135
BpiI	GAAGAC	1 cut(s)	962
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu10I	CCTNAGC	2 cut(s)	378, 612
Bpu1102I	GCTNAGC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	993
BsaWI	WCCGGW	2 cut(s)	1078, 1381
BsaXI	ACNNNNNCTCC	4 cut(s)	1060, 1090, 1474, 1504
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	1 cut(s)	1359
BseGI	GGATG	4 cut(s)	470, 587, 635, 700
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseRI	GAGGAG	2 cut(s)	65, 567
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	931, 1139, 1387
Bsh1285I	CGRYCG	1 cut(s)	1107
BshFI	GGCC	3 cut(s)	337, 516, 768
BshNI	GGYRCC	1 cut(s)	1201
BsiEI	CGRYCG	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	3 cut(s)	65, 1079, 1382
BslFI	GGGAC	2 cut(s)	617, 1348
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmAI	GTCTC	1 cut(s)	993
BsmFI	GGGAC	2 cut(s)	617, 1348
BsnI	GGCC	3 cut(s)	337, 516, 768
Bso31I	GGTCTC	1 cut(s)	993
BsoBI	CYCGRG	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	1381
Bsp143I	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	4 cut(s)	123, 219, 288, 1240
BspANI	GGCC	3 cut(s)	337, 516, 768
BspEI	TCCGGA	1 cut(s)	1381
BspLI	GGNNCC	4 cut(s)	887, 1029, 1203, 1386
BspMAI	CTGCAG	2 cut(s)	349, 844
BspPI	GGATC	5 cut(s)	685, 864, 869, 880, 893
BspQI	GCTCTTC	1 cut(s)	1365
BspT107I	GGYRCC	1 cut(s)	1201
BspTNI	GGTCTC	1 cut(s)	993
BsrBI	CCGCTC	1 cut(s)	288
BssMI	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
BssSI	CACGAG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	1359
Bst4CI	ACNGT	2 cut(s)	111, 1281
Bst6I	CTCTTC	2 cut(s)	1104, 1365
BstC8I	GCNNGC	3 cut(s)	29, 396, 1411
BstDEI	CTNAG	5 cut(s)	173, 378, 495, 612, 1319
BstEII	GGTNACC	1 cut(s)	822
BstF5I	GGATG	4 cut(s)	470, 587, 635, 700
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	9 cut(s)	91, 139, 680, 700, 859, 877, 888, 1107, 1318
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
BstMCI	CGRYCG	1 cut(s)	1107
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 1384, 1482
BstNI	CCWGG	1 cut(s)	1359
BstNSI	RCATGY	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	822
BstSCI	CCNGG	1 cut(s)	1357
BstSFI	CTRYAG	2 cut(s)	345, 840
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	931, 1139, 1387
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	885
BstYI	RGATCY	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	928
BsuRI	GGCC	3 cut(s)	337, 516, 768
BtsCI	GGATG	4 cut(s)	470, 587, 635, 700
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 1161
Cac8I	GCNNGC	3 cut(s)	29, 396, 1411
CaiI	CAGNNNCTG	1 cut(s)	1130
CfoI	GCGC	1 cut(s)	944
Cfr13I	GGNCC	4 cut(s)	515, 767, 1028, 1281
CseI	GACGC	2 cut(s)	792, 1367
Csp6I	GTAC	2 cut(s)	1202, 1300
CviAII	CATG	2 cut(s)	14, 629
CviQI	GTAC	2 cut(s)	1202, 1300
DdeI	CTNAG	5 cut(s)	173, 378, 495, 612, 1319
DpnI	GATC	9 cut(s)	90, 138, 679, 699, 858, 876, 887, 1106, 1317
DpnII	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
Eam1104I	CTCTTC	2 cut(s)	1104, 1365
EarI	CTCTTC	2 cut(s)	1104, 1365
Eco31I	GGTCTC	1 cut(s)	993
Eco47I	GGWCC	2 cut(s)	1028, 1281
Eco47III	AGCGCT	1 cut(s)	943
Eco57I	CTGAAG	3 cut(s)	1152, 1370, 1389
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	1 cut(s)	822
EcoO65I	GGTNACC	1 cut(s)	822
EcoRII	CCWGG	1 cut(s)	1357
FaeI	CATG	2 cut(s)	17, 632
FaqI	GGGAC	2 cut(s)	617, 1348
FatI	CATG	2 cut(s)	13, 628
FauI	CCCGC	3 cut(s)	226, 281, 1247
Fnu4HI	GCNGC	3 cut(s)	945, 1128, 1376
FokI	GGATG	4 cut(s)	457, 574, 622, 707
Fsp4HI	GCNGC	3 cut(s)	945, 1128, 1376
FspBI	CTAG	3 cut(s)	24, 1224, 1272
GlaI	GCGC	1 cut(s)	943
GluI	GCNGC	3 cut(s)	945, 1128, 1376
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	337, 516, 768
HapII	CCGG	3 cut(s)	65, 1079, 1382
HgaI	GACGC	2 cut(s)	792, 1367
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	2 cut(s)	17, 632
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HindIII	AAGCTT	2 cut(s)	29, 1352
HinfI	GANTC	6 cut(s)	713, 723, 833, 956, 1121, 1364
HpaII	CCGG	3 cut(s)	65, 1079, 1382
HphI	GGTGA	3 cut(s)	456, 649, 805
Hpy166II	GTNNAC	3 cut(s)	712, 1064, 1520
Hpy8I	GTNNAC	3 cut(s)	712, 1064, 1520
Hpy99I	CGWCG	3 cut(s)	832, 1506, 1536
HpyAV	CCTTC	2 cut(s)	471, 1300
HpyCH4III	ACNGT	2 cut(s)	111, 1281
HpyCH4IV	ACGT	3 cut(s)	420, 1302, 1522
HpyCH4V	TGCA	5 cut(s)	269, 347, 599, 842, 1476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 1384, 1482
HpyF3I	CTNAG	5 cut(s)	173, 378, 495, 612, 1319
HpySE526I	ACGT	3 cut(s)	420, 1302, 1522
Hsp92II	CATG	2 cut(s)	17, 632
HspAI	GCGC	1 cut(s)	942
Kpn2I	TCCGGA	1 cut(s)	1381
KpnI	GGTACC	1 cut(s)	1205
Kzo9I	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
LguI	GCTCTTC	1 cut(s)	1365
LmnI	GCTCC	4 cut(s)	285, 939, 1384, 1482
Lsp1109I	GCAGC	3 cut(s)	931, 1139, 1387
LweI	GCATC	1 cut(s)	1135
MaeI	CTAG	3 cut(s)	24, 1224, 1272
MaeII	ACGT	3 cut(s)	420, 1302, 1522
MaeIII	GTNAC	2 cut(s)	811, 822
MalI	GATC	9 cut(s)	90, 138, 679, 699, 858, 876, 887, 1106, 1317
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
MboII	GAAGA	7 cut(s)	660, 885, 962, 1121, 1145, 1154, 1382
MflI	RGATCY	1 cut(s)	885
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	1046, 1095, 1342
MlyI	GAGTC	2 cut(s)	707, 965
MmeI	TCCRAC	7 cut(s)	93, 141, 189, 237, 285, 945, 1055
MroI	TCCGGA	1 cut(s)	1381
MroXI	GAANNNNTTC	3 cut(s)	312, 411, 529
MseI	TTAA	8 cut(s)	153, 201, 249, 324, 423, 540, 1262, 1552
MslI	CAYNNNNRTG	5 cut(s)	393, 510, 627, 689, 1173
MspA1I	CMGCKG	1 cut(s)	1130
MspI	CCGG	3 cut(s)	65, 1079, 1382
MspR9I	CCNGG	1 cut(s)	1359
MvaI	CCWGG	1 cut(s)	1359
MwoI	GCNNNNNNNGC	3 cut(s)	24, 1384, 1482
NdeII	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
NlaIII	CATG	2 cut(s)	17, 632
NlaIV	GGNNCC	4 cut(s)	887, 1029, 1203, 1386
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	1052
PciSI	GCTCTTC	1 cut(s)	1365
PcsI	WCGNNNNNNNCGW	1 cut(s)	1528
PdmI	GAANNNNTTC	3 cut(s)	312, 411, 529
PfeI	GAWTC	4 cut(s)	723, 833, 1121, 1364
PflMI	CCANNNNNTGG	1 cut(s)	853
PfoI	TCCNGGA	1 cut(s)	1357
PkrI	GCNGC	3 cut(s)	946, 1129, 1377
Ple19I	CGATCG	1 cut(s)	1107
PleI	GAGTC	2 cut(s)	707, 964
PpsI	GAGTC	2 cut(s)	707, 964
Psp6I	CCWGG	1 cut(s)	1357
PspEI	GGTNACC	1 cut(s)	822
PspGI	CCWGG	1 cut(s)	1357
PspN4I	GGNNCC	4 cut(s)	887, 1029, 1203, 1386
PspPI	GGNCC	4 cut(s)	515, 767, 1028, 1281
PstI	CTGCAG	2 cut(s)	349, 844
PstNI	CAGNNNCTG	1 cut(s)	1130
PsuI	RGATCY	1 cut(s)	885
PvuI	CGATCG	1 cut(s)	1107
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	2 cut(s)	1203, 1301
RsaNI	GTAC	2 cut(s)	1202, 1300
RseI	CAYNNNNRTG	5 cut(s)	393, 510, 627, 689, 1173
SapI	GCTCTTC	1 cut(s)	1365
SaqAI	TTAA	8 cut(s)	153, 201, 249, 324, 423, 540, 1262, 1552
SatI	GCNGC	3 cut(s)	945, 1128, 1376
Sau3AI	GATC	9 cut(s)	88, 136, 677, 697, 856, 874, 885, 1104, 1315
Sau96I	GGNCC	4 cut(s)	515, 767, 1028, 1281
SchI	GAGTC	2 cut(s)	707, 965
ScrFI	CCNGG	1 cut(s)	1359
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	1135
SfcI	CTRYAG	2 cut(s)	345, 840
Sfr274I	CTCGAG	1 cut(s)	1052
SinI	GGWCC	2 cut(s)	1028, 1281
SlaI	CTCGAG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	5 cut(s)	393, 510, 627, 689, 1173
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
Sse9I	AATT	3 cut(s)	1046, 1095, 1342
SsiI	CCGC	4 cut(s)	123, 219, 288, 1240
SspMI	CTAG	3 cut(s)	24, 1224, 1272
StyD4I	CCNGG	1 cut(s)	1357
TaaI	ACNGT	2 cut(s)	111, 1281
TaiI	ACGT	3 cut(s)	423, 1305, 1525
TaqI	TCGA	2 cut(s)	1053, 1107
TasI	AATT	3 cut(s)	1046, 1095, 1342
TfiI	GAWTC	4 cut(s)	723, 833, 1121, 1364
Tru1I	TTAA	8 cut(s)	153, 201, 249, 324, 423, 540, 1262, 1552
Tru9I	TTAA	8 cut(s)	153, 201, 249, 324, 423, 540, 1262, 1552
TscAI	CASTG	2 cut(s)	354, 1168
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	3 cut(s)	944, 1127, 1375
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	660, 962
TspGWI	ACGGA	3 cut(s)	845, 886, 1520
TspRI	CASTG	2 cut(s)	354, 1168
Van91I	CCANNNNNTGG	1 cut(s)	853
VpaK11BI	GGWCC	2 cut(s)	1028, 1281
XapI	RAATTY	1 cut(s)	1342
XceI	RCATGY	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	1052
XmnI	GAANNNNTTC	3 cut(s)	312, 411, 529
XspI	CTAG	3 cut(s)	24, 1224, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.