Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009428

Physical Location & Seq

Genomic Coordinates Reverse (-)

52814841 .. 52816414

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGACTTGGAACATGGCAGGACTAGCAAGCTTCCAGACATTGTTATTGAGGAGATTACACAGCCGGAAACACCTGTAAGAGTTCCTGATCGGAGTGTGGAGATTAAACAGTCGGAAACAACTGCAAAAGTTCCTGATCGGAGTGGGGAGATTAAGCAGTCGGAAACACCTCTAAGAGTTCCTGATGGGAGTGGAGAGATTAACCAGTCGGAAACTCCCGCAAAAGTTCCTGATGGGAGCGGGGAGAGTAAGCATTCGGAAACACTTCCAAAAGCTAATGATGGGAGGCCATCTCCTGCAGTGCCGTCCAAAGTTGTAGAAGCTACTGCTAAGGGAGGTCATCGGCGTGCCCCATCGGAAACAGTTCCAGACGTTAATGATGGGAATGGAGGCAGTAAGCACCCGTCCTCTCCTTCACCCTCATCCAAAGTTGTAGAGGCTACTGCTAAGGGAGGTCATCGGCGTGGCCCATCAGGAACACTTCCAAAAGTTAATGATGGGAGTGGAGGCAGTAAGCACTCGTCCTCTCCTCCAATCTCATCCAAAGTTGCAGAGGCTACTGCTAAGGGAGGTCATCAGCGTGCCCCATCCGATAAGCTATTGTCTTTCACCTCTACATCTTCATCGGGATCAGACACATCAATGGATGATCTGTTCCAAGTGGACTCGAATAGATTCTCTACTTCAACACATATTCCTCCCCTCCCTAAAGATTATGCCCCAAACTCTCCTTATCGCCCATCAACATCTCGTGCGTCAAATGTCACCAATGGGTTACCAACGGAATCCCCTGCAGTCCAAATGATGGATCGGTATGGAGGATATGATCCTTACAGGATCCCATCTACCGTGTTTGATACAAGTAATGTATCCAACAAAGAAATGGAATGGAGCGCTGCTTCCAATGAGTCATTATTTAGTCTTCATTTAGGCAACAACAGTTTTTCCAGAGACCATATACTTATGTTGAGTGATTTGGGTCCAACCAAATCAAGTGAATTGCTCGAGATTAGTCCACGCACTCGACCTCCAGTAGTAGAAACAGAATTCGAAATTAGTAGGATCGAAGAGGGGAGAGAATCAGCAGCTGAAGAAGTGGCAGATGCGAACATCAAGGACACTGAACATGCAAGTGCTGAAAATCATAGTGAGGGGAGGGTACCACCAGCCCCTAAATCCCCTAGCCTTGCCCACTCCCGCCATTCCGATGGGAGTGGATTAAGTGGAACTAGCACACGGTCCTTTGCCTTCCCAATGATCGCACCCCTTGAACTTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

427

Amino Acids

45.32

Weight (kDa)

5.66

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03630
fragaria_vesca	FvH4_4g29990 FvH4_4g29990
malus_domestica	MD13G1062500.v1.1 MD16G1060800.v1.1
prunus_persica	Prupe.1G287500_v2.0.a1
pyrus_communis	pycom16g05300
rosa_chinensis	RchiOBHm_Chr4g0438271
rosa_laevigata	RLG00000006375
rosa_multiflora	Rmu_co8502665.1_g000001 Rmu_sc0011129.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379360
rosa_rugosa	Rorug04G0308300 Rorug04G0308300 Rorug04G0308300 Rorug04G0308400
rosa_samantha	Rh4AG359600 Rh4BG370400 Rh4CG384600 Rh4DG365400
rosa_wichuraiana	Rw0G006420 Rw0G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1159
AccB1I	GGYRCC	1 cut(s)	1159
AccB7I	CCANNNNNTGG	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	3 cut(s)	219, 240, 1198
AclWI	GGATC	6 cut(s)	637, 816, 821, 832, 845, 1070
AcsI	RAATTY	1 cut(s)	1046
AcuI	CTGAAG	1 cut(s)	1110
AfaI	GTAC	1 cut(s)	1161
AfeI	AGCGCT	1 cut(s)	895
AfiI	CCNNNNNNNGG	1 cut(s)	805
AgsI	TTSAA	2 cut(s)	687, 1271
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
AluBI	AGCT	5 cut(s)	31, 275, 323, 598, 1088
AluI	AGCT	5 cut(s)	31, 275, 323, 598, 1088
Alw26I	GTCTC	1 cut(s)	945
AlwI	GGATC	6 cut(s)	637, 816, 821, 832, 845, 1070
AlwNI	CAGNNNCTG	1 cut(s)	1088
Ama87I	CYCGRG	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	895
AoxI	GGCC	2 cut(s)	287, 466
ApeKI	GCWGC	2 cut(s)	896, 1085
ApoI	RAATTY	1 cut(s)	1046
Asp700I	GAANNNNTTC	3 cut(s)	264, 363, 674
Asp718I	GGTACC	1 cut(s)	1159
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	467, 980, 1239
AsuHPI	GGTGA	3 cut(s)	408, 601, 757
AsuII	TTCGAA	1 cut(s)	1050
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	2 cut(s)	980, 1239
BaeGI	GKGCMC	2 cut(s)	352, 586
BamHI	GGATCC	1 cut(s)	837
BanI	GGYRCC	1 cut(s)	1159
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	2 cut(s)	883, 1097
BceAI	ACGGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	880
BcoDI	GTCTC	1 cut(s)	945
BfaI	CTAG	3 cut(s)	24, 1182, 1230
BfmI	CTRYAG	2 cut(s)	297, 792
BfoI	RGCGCY	1 cut(s)	897
BfuI	GTATCC	1 cut(s)	880
BisI	GCNGC	2 cut(s)	897, 1086
BlsI	GCNGC	2 cut(s)	898, 1087
Bme18I	GGWCC	2 cut(s)	980, 1239
BmeT110I	CYCGRG	1 cut(s)	1004
BmgT120I	GGNCC	3 cut(s)	467, 980, 1239
BmiI	GGNNCC	3 cut(s)	839, 981, 1161
BmsI	GCATC	1 cut(s)	1093
BpiI	GAAGAC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	1014
Bpu10I	CCTNAGC	3 cut(s)	330, 447, 564
Bpu14I	TTCGAA	1 cut(s)	1050
BsaI	GGTCTC	1 cut(s)	945
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	805
Bse1I	ACTGG	2 cut(s)	205, 1031
BseGI	GGATG	4 cut(s)	422, 539, 587, 652
BseLI	CCNNNNNNNGG	1 cut(s)	805
BseNI	ACTGG	2 cut(s)	205, 1031
BseRI	GAGGAG	2 cut(s)	65, 519
BseSI	GKGCMC	2 cut(s)	352, 586
BseXI	GCAGC	2 cut(s)	883, 1097
BshFI	GGCC	2 cut(s)	289, 468
BshNI	GGYRCC	1 cut(s)	1159
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	805
BsmAI	GTCTC	1 cut(s)	945
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	289, 468
Bso31I	GGTCTC	1 cut(s)	945
BsoBI	CYCGRG	1 cut(s)	1004
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	2 cut(s)	352, 586
Bsp143I	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
BspACI	CCGC	3 cut(s)	219, 240, 1198
BspANI	GGCC	2 cut(s)	289, 468
BspLI	GGNNCC	3 cut(s)	839, 981, 1161
BspMAI	CTGCAG	2 cut(s)	301, 796
BspPI	GGATC	6 cut(s)	637, 816, 821, 832, 845, 1070
BspT104I	TTCGAA	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	1159
BspTNI	GGTCTC	1 cut(s)	945
BsrBI	CCGCTC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	205, 1031
BssMI	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst4CI	ACNGT	5 cut(s)	111, 364, 850, 941, 1239
Bst6I	CTCTTC	1 cut(s)	1062
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	3 cut(s)	29, 348, 582
BstDEI	CTNAG	5 cut(s)	173, 330, 447, 564, 1274
BstEII	GGTNACC	1 cut(s)	774
BstF5I	GGATG	4 cut(s)	422, 539, 587, 652
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	9 cut(s)	91, 139, 632, 652, 811, 829, 840, 1065, 1260
BstMAI	GTCTC	1 cut(s)	945
BstMBI	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	1130
BstPI	GGTNACC	1 cut(s)	774
BstSFI	CTRYAG	2 cut(s)	297, 792
BstSLI	GKGCMC	2 cut(s)	352, 586
BstV1I	GCAGC	2 cut(s)	883, 1097
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	837
BstXI	CCANNNNNNTGG	1 cut(s)	1208
BstYI	RGATCY	1 cut(s)	837
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	2 cut(s)	289, 468
BtsCI	GGATG	4 cut(s)	422, 539, 587, 652
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 1119
Cac8I	GCNNGC	3 cut(s)	29, 348, 582
CaiI	CAGNNNCTG	1 cut(s)	1088
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	467, 980, 1239
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	1160
CviAII	CATG	3 cut(s)	14, 1127, 1281
CviQI	GTAC	1 cut(s)	1160
DdeI	CTNAG	5 cut(s)	173, 330, 447, 564, 1274
DpnI	GATC	9 cut(s)	90, 138, 631, 651, 810, 828, 839, 1064, 1259
DpnII	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
Eco31I	GGTCTC	1 cut(s)	945
Eco47I	GGWCC	2 cut(s)	980, 1239
Eco47III	AGCGCT	1 cut(s)	895
Eco57I	CTGAAG	1 cut(s)	1110
Eco88I	CYCGRG	1 cut(s)	1004
Eco91I	GGTNACC	1 cut(s)	774
EcoO65I	GGTNACC	1 cut(s)	774
EcoRI	GAATTC	1 cut(s)	1046
FaeI	CATG	3 cut(s)	17, 1130, 1284
FatI	CATG	3 cut(s)	13, 1126, 1280
FauI	CCCGC	3 cut(s)	226, 233, 1205
Fnu4HI	GCNGC	2 cut(s)	897, 1086
FokI	GGATG	4 cut(s)	409, 526, 574, 659
Fsp4HI	GCNGC	2 cut(s)	897, 1086
FspBI	CTAG	3 cut(s)	24, 1182, 1230
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	2 cut(s)	897, 1086
GsuI	CTGGAG	1 cut(s)	1014
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	289, 468
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	3 cut(s)	17, 1130, 1284
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	5 cut(s)	665, 675, 785, 908, 1079
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	408, 601, 757
Hpy166II	GTNNAC	2 cut(s)	664, 1016
Hpy8I	GTNNAC	2 cut(s)	664, 1016
HpyAV	CCTTC	2 cut(s)	423, 1258
HpyCH4III	ACNGT	5 cut(s)	111, 364, 850, 941, 1239
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	125, 299, 551, 794, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	5 cut(s)	173, 330, 447, 564, 1274
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	17, 1130, 1284
HspAI	GCGC	1 cut(s)	894
KpnI	GGTACC	1 cut(s)	1163
Kzo9I	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
LmnI	GCTCC	2 cut(s)	237, 891
Lsp1109I	GCAGC	2 cut(s)	883, 1097
LweI	GCATC	1 cut(s)	1093
MaeI	CTAG	3 cut(s)	24, 1182, 1230
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	763, 774
MalI	GATC	9 cut(s)	90, 138, 631, 651, 810, 828, 839, 1064, 1259
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
MboII	GAAGA	4 cut(s)	612, 914, 1079, 1103
MflI	RGATCY	1 cut(s)	837
MhlI	GDGCHC	2 cut(s)	352, 586
MluCI	AATT	3 cut(s)	998, 1046, 1053
MlyI	GAGTC	2 cut(s)	659, 917
MmeI	TCCRAC	5 cut(s)	93, 141, 189, 897, 1007
MroXI	GAANNNNTTC	3 cut(s)	264, 363, 674
MseI	TTAA	6 cut(s)	105, 153, 201, 375, 492, 1220
MslI	CAYNNNNRTG	6 cut(s)	345, 462, 579, 641, 1131, 1206
MspA1I	CMGCKG	1 cut(s)	1088
MspI	CCGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
NlaIII	CATG	3 cut(s)	17, 1130, 1284
NlaIV	GGNNCC	3 cut(s)	839, 981, 1161
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	1130
NspV	TTCGAA	1 cut(s)	1050
PaeR7I	CTCGAG	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	3 cut(s)	264, 363, 674
PfeI	GAWTC	3 cut(s)	675, 785, 1079
PflMI	CCANNNNNTGG	1 cut(s)	805
PkrI	GCNGC	2 cut(s)	898, 1087
PleI	GAGTC	2 cut(s)	659, 916
PpsI	GAGTC	2 cut(s)	659, 916
PspEI	GGTNACC	1 cut(s)	774
PspN4I	GGNNCC	3 cut(s)	839, 981, 1161
PspPI	GGNCC	3 cut(s)	467, 980, 1239
PstI	CTGCAG	2 cut(s)	301, 796
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	1 cut(s)	837
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	1 cut(s)	1161
RsaNI	GTAC	1 cut(s)	1160
RseI	CAYNNNNRTG	6 cut(s)	345, 462, 579, 641, 1131, 1206
SaqAI	TTAA	6 cut(s)	105, 153, 201, 375, 492, 1220
SatI	GCNGC	2 cut(s)	897, 1086
Sau3AI	GATC	9 cut(s)	88, 136, 629, 649, 808, 826, 837, 1062, 1257
Sau96I	GGNCC	3 cut(s)	467, 980, 1239
SchI	GAGTC	2 cut(s)	659, 917
SduI	GDGCHC	2 cut(s)	352, 586
SfaNI	GCATC	1 cut(s)	1093
SfcI	CTRYAG	2 cut(s)	297, 792
Sfr274I	CTCGAG	1 cut(s)	1004
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	2 cut(s)	980, 1239
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	6 cut(s)	345, 462, 579, 641, 1131, 1206
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	3 cut(s)	998, 1046, 1053
SsiI	CCGC	3 cut(s)	219, 240, 1198
SspMI	CTAG	3 cut(s)	24, 1182, 1230
TaaI	ACNGT	5 cut(s)	111, 364, 850, 941, 1239
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	5 cut(s)	668, 1005, 1024, 1050, 1065
TasI	AATT	3 cut(s)	998, 1046, 1053
TfiI	GAWTC	3 cut(s)	675, 785, 1079
Tru1I	TTAA	6 cut(s)	105, 153, 201, 375, 492, 1220
Tru9I	TTAA	6 cut(s)	105, 153, 201, 375, 492, 1220
TscAI	CASTG	2 cut(s)	306, 1126
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	2 cut(s)	896, 1085
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	2 cut(s)	612, 914
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	2 cut(s)	306, 1126
Van91I	CCANNNNNTGG	1 cut(s)	805
VpaK11BI	GGWCC	2 cut(s)	980, 1239
XapI	RAATTY	1 cut(s)	1046
XceI	RCATGY	1 cut(s)	1130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XhoI	CTCGAG	1 cut(s)	1004
XmnI	GAANNNNTTC	3 cut(s)	264, 363, 674
XspI	CTAG	3 cut(s)	24, 1182, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.